Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

12052878 .. 12057897

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G152800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTAATAAAACATGGAATAAATTCTGGGTTTGGTGCAATTTATATGTTGGCTTCGTCTCCTGTGTTGAGAAGGCAACAGTTTTTGATAAGGTGTCTTGGAGATTACAGCGATCAGAACACTAACACCCATCAGAAGAGAATGCAAGGAATAAAATTCACCAGTGGAGCCTCTTTGGAGGCTGATGCTGAGAACGTTCTGAGAGCAATCACTCCGACCCTTGATCCCAATAGACACAAGGGTCAGGCTGGAAAGATAGCTGTTATCGGCGGGTGTCGTGAGTACACTGGTGCTCCATATTTTGCAGCTATCTCAGCATTAAAAATTGGTGCAGATCTATCCCATGTTTTTTGTACGAAAGATGCAGCTGCAGTCATAAAAAGCTACAGTCCTGAGTTGATTGTACACCCAGTTTTGGAAGAATCATACGGTGTTAGGGATGATGAAAAACGTATCATCTCAGGAAAGGTTCTTGCTGAAGTTGCTAAATGGATGGAAAGATTTGATTGTCTTGTCATTGGTCCAGGCCTTGGAAGGGACCCATTTCTTCTGGACTGTGTGAGCAAAATCATAAAGCTTGCAAGGCAGTCCAATGTCCCAATTGTCATAGATGGGGATGGACTCTTTCTTGTTACAAACTCTCTTGATCTTATAAGTGGATATCCTTTGGCTGTGCTGACCCCAAATGTAAATGAATACAAGCGCCTTGTACAGAAAGTTTTGAGTTGTGAAGTAAATGATGAAGAAGCTCATGAGCAACTACTATCTCTTGCAAAAAGGATTGGTGGTGTAACTATGCTTAGGAAAGGAAAATCTGACTTCATAAGTGATGGTGAGACAGTCAAATCAGTGAGCATCTACGGTTCTCCTCGAAGATGTGGTGGGCAGGGTGATATACTTTCTGGAAGTGTCGCTGTATTTCTATCTTGGGCCCGTCACGCTATCAGAGATGGGGACTCGAGTATCAGTTCCAAAAACCCCGCAATGTTGGGGTCCATTGCTGGGTCGGCTTTAATGAGAAAGGCTGCATCCCTTGCTTTTGACAATAAGAAAAGGTCAACCCTCACTACTGATATCATCGAGTACTTGGGAAGAAGTTTGGAGGATATTTGCCCAGTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

375

Amino Acids

40.56

Weight (kDa)

8.8

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AasI	GACNNNNNNGTC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	530
AciI	CCGC	2 cut(s)	270, 981
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	22, 155
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	5 cut(s)	284, 355, 405, 711, 1085
AfiI	CCNNNNNNNGG	4 cut(s)	415, 530, 535, 1002
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	6 cut(s)	260, 308, 368, 384, 577, 749
AluI	AGCT	6 cut(s)	260, 308, 368, 384, 577, 749
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	63, 830
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	958
AoxI	GGCC	2 cut(s)	526, 930
ApaI	GGGCCC	1 cut(s)	934
ApeKI	GCWGC	4 cut(s)	305, 365, 368, 1025
ApoI	RAATTY	2 cut(s)	22, 155
Asp700I	GAANNNNTTC	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	5 cut(s)	521, 538, 930, 931, 993
AsuHPI	GGTGA	3 cut(s)	151, 845, 902
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	3 cut(s)	521, 538, 993
BaeGI	GKGCMC	1 cut(s)	934
BaeI	ACNNNNGTAYC	2 cut(s)	946, 979
BanII	GRGCYC	1 cut(s)	934
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	4 cut(s)	317, 355, 377, 1012
BccI	CCATC	6 cut(s)	138, 487, 605, 611, 824, 944
BciT130I	CCWGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	63, 830
BfmI	CTRYAG	2 cut(s)	369, 385
BfoI	RGCGCY	1 cut(s)	706
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	306, 366, 369, 1026
BlsI	GCNGC	4 cut(s)	307, 367, 370, 1027
BmcAI	AGTACT	1 cut(s)	1085
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	3 cut(s)	521, 538, 993
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	5 cut(s)	521, 538, 930, 931, 993
BmiI	GGNNCC	5 cut(s)	169, 539, 540, 932, 994
BmrFI	CCNGG	1 cut(s)	525
BmrI	ACTGGG	2 cut(s)	404, 1109
BmsI	GCATC	4 cut(s)	175, 352, 864, 1037
BmuI	ACTGGG	2 cut(s)	404, 1109
Bpu10I	CCTNAGC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 530, 535, 1002
Bse1I	ACTGG	4 cut(s)	162, 292, 410, 1115
Bse3DI	GCAATG	2 cut(s)	990, 996
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	4 cut(s)	445, 498, 622, 1028
BseLI	CCNNNNNNNGG	4 cut(s)	415, 530, 535, 1002
BseMI	GCAATG	2 cut(s)	990, 996
BseMII	CTCAG	5 cut(s)	180, 191, 327, 384, 474
BseNI	ACTGG	4 cut(s)	162, 292, 410, 1115
BseRI	GAGGAG	1 cut(s)	858
BseSI	GKGCMC	1 cut(s)	934
BseXI	GCAGC	4 cut(s)	317, 355, 377, 1012
BseYI	CCCAGC	1 cut(s)	1001
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	528, 932
BsiHKAI	GWGCWC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	958
BslFI	GGGAC	3 cut(s)	551, 581, 968
BslI	CCNNNNNNNGG	4 cut(s)	415, 530, 535, 1002
BsmAI	GTCTC	2 cut(s)	63, 830
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	3 cut(s)	551, 581, 968
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	528, 932
BsoBI	CYCGRG	1 cut(s)	958
Bsp120I	GGGCCC	1 cut(s)	930
Bsp1286I	GDGCHC	2 cut(s)	295, 934
Bsp1407I	TGTACA	2 cut(s)	403, 709
Bsp143I	GATC	4 cut(s)	112, 223, 334, 646
BspACI	CCGC	2 cut(s)	270, 981
BspANI	GGCC	2 cut(s)	528, 932
BspCNI	CTCAG	5 cut(s)	181, 192, 326, 385, 473
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	5 cut(s)	169, 539, 540, 932, 994
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	990, 996
BsrGI	TGTACA	2 cut(s)	403, 709
BsrI	ACTGG	4 cut(s)	162, 292, 410, 1115
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	4 cut(s)	112, 223, 334, 646
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	6 cut(s)	81, 389, 431, 557, 841, 863
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstAUI	TGTACA	2 cut(s)	403, 709
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	6 cut(s)	189, 200, 313, 393, 460, 800
BstF5I	GGATG	4 cut(s)	445, 498, 622, 1028
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	4 cut(s)	115, 226, 337, 649
BstMAI	GTCTC	2 cut(s)	63, 830
BstMBI	GATC	4 cut(s)	112, 223, 334, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 482, 583, 938, 1007, 1034
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	2 cut(s)	369, 385
BstSLI	GKGCMC	1 cut(s)	934
BstV1I	GCAGC	4 cut(s)	317, 355, 377, 1012
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	528, 932
BtsCI	GGATG	4 cut(s)	445, 498, 622, 1028
BtsIMutI	CAGTG	3 cut(s)	169, 285, 855
Cac8I	GCNNGC	1 cut(s)	579
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	5 cut(s)	521, 538, 930, 931, 993
Csp6I	GTAC	5 cut(s)	283, 354, 404, 710, 1084
CviAII	CATG	3 cut(s)	14, 344, 752
CviQI	GTAC	5 cut(s)	283, 354, 404, 710, 1084
DdeI	CTNAG	6 cut(s)	189, 200, 313, 393, 460, 800
DpnI	GATC	4 cut(s)	114, 225, 336, 648
DpnII	GATC	4 cut(s)	112, 223, 334, 646
DrdI	GACNNNNNNGTC	1 cut(s)	240
DseDI	GACNNNNNNGTC	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	529
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	934
Eco32I	GATATC	2 cut(s)	662, 1075
Eco47I	GGWCC	3 cut(s)	521, 538, 993
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	958
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	2 cut(s)	662, 1075
EcoT14I	CCWWGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	3 cut(s)	17, 347, 755
FaqI	GGGAC	3 cut(s)	551, 581, 968
FatI	CATG	3 cut(s)	13, 343, 751
FauI	CCCGC	2 cut(s)	263, 988
Fnu4HI	GCNGC	4 cut(s)	306, 366, 369, 1026
FokI	GGATG	4 cut(s)	452, 505, 629, 1015
FriOI	GRGCYC	1 cut(s)	934
Fsp4HI	GCNGC	4 cut(s)	306, 366, 369, 1026
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	4 cut(s)	306, 366, 369, 1026
GsaI	CCCAGC	1 cut(s)	1005
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	2 cut(s)	528, 932
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	17, 347, 755
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	1059
HindII	GTYRAC	1 cut(s)	1059
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	3 cut(s)	422, 621, 956
HphI	GGTGA	3 cut(s)	151, 845, 902
Hpy166II	GTNNAC	3 cut(s)	285, 406, 1059
Hpy188I	TCNGA	6 cut(s)	117, 135, 201, 216, 817, 947
Hpy188III	TCNNGA	7 cut(s)	278, 392, 462, 551, 644, 752, 903
Hpy8I	GTNNAC	3 cut(s)	285, 406, 1059
HpyAV	CCTTC	2 cut(s)	66, 528
HpyCH4III	ACNGT	6 cut(s)	81, 389, 431, 557, 841, 863
HpyCH4IV	ACGT	2 cut(s)	195, 451
HpyCH4V	TGCA	9 cut(s)	38, 145, 305, 332, 365, 371, 581, 773, 1028
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 482, 583, 938, 1007, 1034
HpyF3I	CTNAG	6 cut(s)	189, 200, 313, 393, 460, 800
HpySE526I	ACGT	2 cut(s)	195, 451
Hsp92II	CATG	3 cut(s)	17, 347, 755
HspAI	GCGC	1 cut(s)	703
KflI	GGGWCCC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	112, 223, 334, 646
LmnI	GCTCC	2 cut(s)	167, 298
Lsp1109I	GCAGC	4 cut(s)	317, 355, 377, 1012
LweI	GCATC	4 cut(s)	175, 352, 864, 1037
MaeII	ACGT	2 cut(s)	195, 451
MaeIII	GTNAC	3 cut(s)	631, 790, 935
MalI	GATC	4 cut(s)	114, 225, 336, 648
MboI	GATC	4 cut(s)	112, 223, 334, 646
MboII	GAAGA	6 cut(s)	148, 431, 539, 755, 885, 1104
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	295, 934
MluCI	AATT	5 cut(s)	22, 39, 155, 324, 600
MlyI	GAGTC	2 cut(s)	615, 950
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	172, 181, 879, 1073, 1096
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	3 cut(s)	5, 320, 1013
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	314, 482, 583, 938, 1007, 1034
NdeII	GATC	4 cut(s)	112, 223, 334, 646
NlaIII	CATG	3 cut(s)	17, 347, 755
NlaIV	GGNNCC	5 cut(s)	169, 539, 540, 932, 994
NmuCI	GTSAC	1 cut(s)	935
PaeR7I	CTCGAG	1 cut(s)	958
PagI	TCATGA	1 cut(s)	751
PceI	AGGCCT	1 cut(s)	528
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	307, 367, 370, 1027
PleI	GAGTC	2 cut(s)	615, 950
PpsI	GAGTC	2 cut(s)	615, 950
PpuMI	RGGWCCY	1 cut(s)	538
PsiI	TTATAA	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	5 cut(s)	169, 539, 540, 932, 994
PspOMI	GGGCCC	1 cut(s)	930
PspPI	GGNCC	5 cut(s)	521, 538, 930, 931, 993
PspPPI	RGGWCCY	1 cut(s)	538
PspXI	VCTCGAGB	1 cut(s)	958
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	5 cut(s)	284, 355, 405, 711, 1085
RsaNI	GTAC	5 cut(s)	283, 354, 404, 710, 1084
SaqAI	TTAA	3 cut(s)	5, 320, 1013
SatI	GCNGC	4 cut(s)	306, 366, 369, 1026
Sau3AI	GATC	4 cut(s)	112, 223, 334, 646
Sau96I	GGNCC	5 cut(s)	521, 538, 930, 931, 993
ScaI	AGTACT	1 cut(s)	1085
SchI	GAGTC	2 cut(s)	615, 950
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	2 cut(s)	295, 934
SfaNI	GCATC	4 cut(s)	175, 352, 864, 1037
SfcI	CTRYAG	2 cut(s)	369, 385
Sfr274I	CTCGAG	1 cut(s)	958
SinI	GGWCC	3 cut(s)	521, 538, 993
SlaI	CTCGAG	1 cut(s)	958
SmlI	CTYRAG	1 cut(s)	958
SmoI	CTYRAG	1 cut(s)	958
Sse9I	AATT	5 cut(s)	22, 39, 155, 324, 600
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	270, 981
StuI	AGGCCT	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	6 cut(s)	81, 389, 431, 557, 841, 863
TaiI	ACGT	2 cut(s)	198, 454
TaqI	TCGA	3 cut(s)	871, 959, 1080
TasI	AATT	5 cut(s)	22, 39, 155, 324, 600
TatI	WGTACW	4 cut(s)	282, 403, 709, 1083
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	3 cut(s)	5, 320, 1013
Tru9I	TTAA	3 cut(s)	5, 320, 1013
TscAI	CASTG	3 cut(s)	169, 292, 855
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	4 cut(s)	305, 365, 368, 1025
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	4 cut(s)	459, 708, 756, 811
TspRI	CASTG	3 cut(s)	169, 292, 855
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	3 cut(s)	521, 538, 993
XapI	RAATTY	2 cut(s)	22, 155
XhoI	CTCGAG	1 cut(s)	958
XmnI	GAANNNNTTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.