Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

29685777 .. 29689510

Gene Structure 3734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG291600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACACTTGGTGATAAGGTGTCTTGGAGTTGGAGGTTACAGTGATCATAACATTAACACTAATCAGAAACCAATGCAAGGAGTTAGATTCAGTAGTGGAGCAGCTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGGCACAAGGGTCAGGCTGGAAAGATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTCAGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAAGGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTTGATTGTCTTGTAATTGGTCCGGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCAATTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTGGCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACGTGAGCAATTACTATCTCTTGCAAAAAGGATTGGTGGTGTCACTATACTTAGGAAAGGAAAAGCTGACCTCATTAGTGATGGTGAGACAGTTGAATCAGCGAGCATATATGGTTCTCCTCGAAGATGTGGTGGACAGGGAGATATACTTTCTGGAAGCGTTGCTGTATTTCTTTCATGGGCCCGTCAAATTGTCACAGATGAGAATCTGAGTATCAGTTCCCGAAACCCCACAATGTTGGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCCCTCGCTTTTGAGAATAAGAAAAGGTCAACTCTTACTACTGACATCATAGAATGCTTGGGAAGAAGTTTGCAGGATATTTGTCCAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

362

Amino Acids

39.31

Weight (kDa)

7.03

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	75 - 350	6.8e-48	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	237
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	182, 306
AcuI	CTGAAG	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	40
AfaI	GTAC	4 cut(s)	248, 319, 369, 675
AfiI	CCNNNNNNNGG	3 cut(s)	107, 494, 499
AgsI	TTSAA	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	6 cut(s)	17, 134, 224, 348, 417, 779
AluI	AGCT	6 cut(s)	17, 134, 224, 348, 417, 779
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	794
AlwI	GGATC	2 cut(s)	182, 306
AoxI	GGCC	2 cut(s)	490, 894
ApaI	GGGCCC	1 cut(s)	898
ApeKI	GCWGC	4 cut(s)	131, 269, 329, 989
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	5 cut(s)	485, 490, 502, 894, 895
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	3 cut(s)	52, 452, 809
AvaII	GGWCC	2 cut(s)	485, 502
BaeGI	GKGCMC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	898
BbrPI	CACGTG	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	143, 256, 316, 976
BccI	CCATC	4 cut(s)	451, 569, 575, 788
BceAI	ACGGC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	349
BisI	GCNGC	4 cut(s)	132, 270, 330, 990
BlsI	GCNGC	4 cut(s)	133, 271, 331, 991
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	485, 502
BmgT120I	GGNCC	5 cut(s)	485, 490, 502, 894, 895
BmiI	GGNNCC	5 cut(s)	239, 503, 504, 896, 970
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	139, 316, 700, 1001
BpuMI	CCSGG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 494, 499
Bse1I	ACTGG	3 cut(s)	256, 608, 1079
Bse3DI	GCAATG	1 cut(s)	960
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	4 cut(s)	409, 462, 586, 992
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	3 cut(s)	107, 494, 499
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	5 cut(s)	144, 155, 291, 348, 914
BseNI	ACTGG	3 cut(s)	256, 608, 1079
BseRI	GAGGAG	1 cut(s)	822
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	4 cut(s)	143, 256, 316, 976
BshFI	GGCC	2 cut(s)	492, 896
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	289, 515
BslI	CCNNNNNNNGG	3 cut(s)	107, 494, 499
BsmAI	GTCTC	1 cut(s)	794
BsmFI	GGGAC	2 cut(s)	289, 515
BsmI	GAATGC	1 cut(s)	1052
BsnI	GGCC	2 cut(s)	492, 896
Bsp120I	GGGCCC	1 cut(s)	894
Bsp1286I	GDGCHC	2 cut(s)	259, 898
Bsp1407I	TGTACA	2 cut(s)	317, 673
Bsp143I	GATC	5 cut(s)	73, 187, 298, 363, 610
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	492, 896
BspCNI	CTCAG	5 cut(s)	145, 156, 290, 349, 915
BspLI	GGNNCC	5 cut(s)	239, 503, 504, 896, 970
BspPI	GGATC	2 cut(s)	182, 306
BspT107I	GGYRCC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	960
BsrGI	TGTACA	2 cut(s)	317, 673
BsrI	ACTGG	3 cut(s)	256, 608, 1079
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	5 cut(s)	73, 187, 298, 363, 610
BssT1I	CCWWGG	1 cut(s)	493
Bst4CI	ACNGT	5 cut(s)	71, 353, 395, 552, 805
Bst6I	CTCTTC	1 cut(s)	378
BstAUI	TGTACA	2 cut(s)	317, 673
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	4 cut(s)	6, 543, 817, 967
BstDEI	CTNAG	7 cut(s)	153, 164, 277, 357, 424, 764, 923
BstF5I	GGATG	4 cut(s)	409, 462, 586, 992
BstKTI	GATC	5 cut(s)	76, 190, 301, 366, 613
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	5 cut(s)	73, 187, 298, 363, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 278, 966, 998
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	898
BstV1I	GCAGC	4 cut(s)	143, 256, 316, 976
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	492, 896
BtsCI	GGATG	4 cut(s)	409, 462, 586, 992
BtsIMutI	CAGTG	3 cut(s)	76, 249, 400
Cac8I	GCNNGC	4 cut(s)	6, 543, 817, 967
Cfr13I	GGNCC	5 cut(s)	485, 490, 502, 894, 895
Csp6I	GTAC	4 cut(s)	247, 318, 368, 674
CviAII	CATG	3 cut(s)	308, 542, 891
CviQI	GTAC	4 cut(s)	247, 318, 368, 674
DdeI	CTNAG	7 cut(s)	153, 164, 277, 357, 424, 764, 923
DpnI	GATC	5 cut(s)	75, 189, 300, 365, 612
DpnII	GATC	5 cut(s)	73, 187, 298, 363, 610
DraIII	CACNNNGTG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	898
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	2 cut(s)	485, 502
Eco57I	CTGAAG	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	898
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	3 cut(s)	311, 545, 894
FaqI	GGGAC	2 cut(s)	289, 515
FatI	CATG	3 cut(s)	307, 541, 890
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	132, 270, 330, 990
FokI	GGATG	4 cut(s)	416, 469, 593, 979
FriOI	GRGCYC	1 cut(s)	898
Fsp4HI	GCNGC	4 cut(s)	132, 270, 330, 990
GluI	GCNGC	4 cut(s)	132, 270, 330, 990
HaeIII	GGCC	2 cut(s)	492, 896
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	3 cut(s)	311, 545, 894
HincII	GTYRAC	1 cut(s)	1023
HindII	GTYRAC	1 cut(s)	1023
HinfI	GANTC	6 cut(s)	117, 386, 585, 643, 809, 919
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	3 cut(s)	52, 452, 809
Hpy166II	GTNNAC	4 cut(s)	249, 370, 848, 1023
Hpy188I	TCNGA	3 cut(s)	96, 165, 924
Hpy188III	TCNNGA	5 cut(s)	356, 515, 640, 867, 936
Hpy8I	GTNNAC	4 cut(s)	249, 370, 848, 1023
HpyAV	CCTTC	3 cut(s)	21, 492, 979
HpyCH4III	ACNGT	5 cut(s)	71, 353, 395, 552, 805
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	7 cut(s)	106, 545, 713, 737, 960, 992, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 278, 966, 998
HpyF3I	CTNAG	7 cut(s)	153, 164, 277, 357, 424, 764, 923
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	3 cut(s)	311, 545, 894
KflI	GGGWCCC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	73, 187, 298, 363, 610
LmnI	GCTCC	3 cut(s)	128, 262, 974
Lsp1109I	GCAGC	4 cut(s)	143, 256, 316, 976
LweI	GCATC	4 cut(s)	139, 316, 700, 1001
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	3 cut(s)	65, 754, 907
MalI	GATC	5 cut(s)	75, 189, 300, 365, 612
MboI	GATC	5 cut(s)	73, 187, 298, 363, 610
MboII	GAAGA	6 cut(s)	3, 395, 503, 719, 849, 1068
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	2 cut(s)	259, 898
MluCI	AATT	6 cut(s)	288, 375, 480, 564, 722, 903
MlyI	GAGTC	3 cut(s)	395, 579, 637
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	56, 136, 400, 794, 843, 975, 1007
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	84, 284, 977
MslI	CAYNNNNRTG	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	1052
MwoI	GCNNNNNNNGC	4 cut(s)	14, 278, 966, 998
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	5 cut(s)	73, 187, 298, 363, 610
NlaIII	CATG	3 cut(s)	311, 545, 894
NlaIV	GGNNCC	5 cut(s)	239, 503, 504, 896, 970
NmuCI	GTSAC	2 cut(s)	754, 907
NspI	RCATGY	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	1052
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	117, 809, 919
PkrI	GCNGC	4 cut(s)	133, 271, 331, 991
PleI	GAGTC	3 cut(s)	394, 579, 637
PmaCI	CACGTG	1 cut(s)	716
PmlI	CACGTG	1 cut(s)	716
PpsI	GAGTC	3 cut(s)	394, 579, 637
Ppu21I	YACGTR	1 cut(s)	716
PpuMI	RGGWCCY	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	502
PspCI	CACGTG	1 cut(s)	716
PspN4I	GGNNCC	5 cut(s)	239, 503, 504, 896, 970
PspOMI	GGGCCC	1 cut(s)	894
PspPI	GGNCC	5 cut(s)	485, 490, 502, 894, 895
PspPPI	RGGWCCY	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	4 cut(s)	248, 319, 369, 675
RsaNI	GTAC	4 cut(s)	247, 318, 368, 674
RseI	CAYNNNNRTG	1 cut(s)	977
SaqAI	TTAA	3 cut(s)	84, 284, 977
SatI	GCNGC	4 cut(s)	132, 270, 330, 990
Sau3AI	GATC	5 cut(s)	73, 187, 298, 363, 610
Sau96I	GGNCC	5 cut(s)	485, 490, 502, 894, 895
SchI	GAGTC	3 cut(s)	395, 579, 637
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	259, 898
SfaNI	GCATC	4 cut(s)	139, 316, 700, 1001
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	2 cut(s)	485, 502
SmiMI	CAYNNNNRTG	1 cut(s)	977
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	6 cut(s)	288, 375, 480, 564, 722, 903
SsiI	CCGC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	5 cut(s)	71, 353, 395, 552, 805
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	835
TasI	AATT	6 cut(s)	288, 375, 480, 564, 722, 903
TatI	WGTACW	3 cut(s)	246, 317, 673
TfiI	GAWTC	3 cut(s)	117, 809, 919
Tru1I	TTAA	3 cut(s)	84, 284, 977
Tru9I	TTAA	3 cut(s)	84, 284, 977
TscAI	CASTG	3 cut(s)	76, 256, 400
TseFI	GTSAC	2 cut(s)	754, 907
TseI	GCWGC	4 cut(s)	131, 269, 329, 989
Tsp45I	GTSAC	2 cut(s)	754, 907
TspDTI	ATGAA	3 cut(s)	672, 720, 879
TspRI	CASTG	3 cut(s)	76, 256, 400
VpaK11BI	GGWCC	2 cut(s)	485, 502
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.