Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Forward (+)

19966303 .. 19970307

Gene Structure 4005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACAGTTGGTGATAAGGTGTCTTGGAGTTGGAGGTTACAGTGATCATAACATTAACACTAATCAGAAACCAATGCAAGGAGTTAGATTCAGTAGTGGAGCTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGGCACAAGGGTCAGGCTGGAAATATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTTAGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCGTACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAAGGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTTGATTGTCTTGTAATTGGTCCAGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCAATTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTGGCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACGCGAGCAATTACTATCTCTTGCAAAAAGGATTGGTGGTGTCACTATACTTAGGAAAGGAAAAGCTGACCTCATTAGTGATGGTGAGACAGTTGAATCAGTGAGCATATATGGTTCTCCTCGAAGATGTGGTGGACAGGGAGATATACTTTCTGGAAGCGTTGCTGTATTTCTTTCATGGGCCCGTCAAATTGTCACAGATGAGAATCTGAGTATCAGTTCCAGAAACCCCACAATGTTGGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCCCTCGCTTTTGAGAATAAGAAAAGGTCAACTCTTACTACTGACATCATAGAATGCTTGGGAAGAAGTTTGCAGGATATTTGTCCAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

361

Amino Acids

39.27

Weight (kDa)

6.61

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	74 - 349	6.4e-48	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccII	CGCG	1 cut(s)	714
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	179, 303
AfaI	GTAC	5 cut(s)	245, 316, 366, 389, 672
AfiI	CCNNNNNNNGG	3 cut(s)	107, 491, 496
AgsI	TTSAA	1 cut(s)	806
AjnI	CCWGG	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	6 cut(s)	17, 131, 221, 345, 414, 776
AluI	AGCT	6 cut(s)	17, 131, 221, 345, 414, 776
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	2 cut(s)	179, 303
AoxI	GGCC	2 cut(s)	487, 891
ApaI	GGGCCC	1 cut(s)	895
ApeKI	GCWGC	3 cut(s)	266, 326, 986
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	4 cut(s)	482, 499, 891, 892
AsuHPI	GGTGA	3 cut(s)	52, 449, 806
AvaII	GGWCC	2 cut(s)	482, 499
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	895
BarI	GAAGNNNNNNTAC	2 cut(s)	115, 147
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	253, 313, 973
BccI	CCATC	4 cut(s)	448, 566, 572, 785
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	346
BisI	GCNGC	3 cut(s)	267, 327, 987
BlsI	GCNGC	3 cut(s)	268, 328, 988
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	2 cut(s)	482, 499
BmgT120I	GGNCC	4 cut(s)	482, 499, 891, 892
BmiI	GGNNCC	5 cut(s)	236, 500, 501, 893, 967
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	4 cut(s)	136, 313, 697, 998
BsaBI	GATNNNNATC	1 cut(s)	915
BsaJI	CCNNGG	1 cut(s)	490
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 491, 496
Bse1I	ACTGG	3 cut(s)	253, 605, 1076
Bse3DI	GCAATG	1 cut(s)	957
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	4 cut(s)	406, 459, 583, 989
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	3 cut(s)	107, 491, 496
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	5 cut(s)	141, 152, 288, 345, 911
BseNI	ACTGG	3 cut(s)	253, 605, 1076
BseRI	GAGGAG	1 cut(s)	819
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	3 cut(s)	253, 313, 973
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	489, 893
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	256
BslFI	GGGAC	2 cut(s)	286, 512
BslI	CCNNNNNNNGG	3 cut(s)	107, 491, 496
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	286, 512
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	489, 893
Bsp120I	GGGCCC	1 cut(s)	891
Bsp1286I	GDGCHC	2 cut(s)	256, 895
Bsp1407I	TGTACA	2 cut(s)	314, 670
Bsp143I	GATC	5 cut(s)	73, 184, 295, 360, 607
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	2 cut(s)	489, 893
BspCNI	CTCAG	5 cut(s)	142, 153, 287, 346, 912
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	5 cut(s)	236, 500, 501, 893, 967
BspPI	GGATC	2 cut(s)	179, 303
BspT107I	GGYRCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	957
BsrGI	TGTACA	2 cut(s)	314, 670
BsrI	ACTGG	3 cut(s)	253, 605, 1076
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	5 cut(s)	73, 184, 295, 360, 607
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	6 cut(s)	36, 71, 350, 392, 549, 802
Bst6I	CTCTTC	1 cut(s)	375
BstAUI	TGTACA	2 cut(s)	314, 670
BstC8I	GCNNGC	5 cut(s)	6, 540, 712, 716, 964
BstDEI	CTNAG	7 cut(s)	150, 161, 274, 354, 421, 761, 920
BstF5I	GGATG	4 cut(s)	406, 459, 583, 989
BstFNI	CGCG	1 cut(s)	714
BstKTI	GATC	5 cut(s)	76, 187, 298, 363, 610
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	5 cut(s)	73, 184, 295, 360, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 275, 963, 995
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	3 cut(s)	253, 313, 973
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	489, 893
BtsCI	GGATG	4 cut(s)	406, 459, 583, 989
BtsIMutI	CAGTG	4 cut(s)	76, 246, 397, 816
Cac8I	GCNNGC	5 cut(s)	6, 540, 712, 716, 964
Cfr13I	GGNCC	4 cut(s)	482, 499, 891, 892
Csp6I	GTAC	5 cut(s)	244, 315, 365, 388, 671
CviAII	CATG	3 cut(s)	305, 539, 888
CviQI	GTAC	5 cut(s)	244, 315, 365, 388, 671
DdeI	CTNAG	7 cut(s)	150, 161, 274, 354, 421, 761, 920
DpnI	GATC	5 cut(s)	75, 186, 297, 362, 609
DpnII	GATC	5 cut(s)	73, 184, 295, 360, 607
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	895
Eco32I	GATATC	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	482, 499
EcoO109I	RGGNCCY	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	3 cut(s)	308, 542, 891
FaqI	GGGAC	2 cut(s)	286, 512
FatI	CATG	3 cut(s)	304, 538, 887
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	267, 327, 987
FokI	GGATG	4 cut(s)	413, 466, 590, 976
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	3 cut(s)	267, 327, 987
GluI	GCNGC	3 cut(s)	267, 327, 987
HaeIII	GGCC	2 cut(s)	489, 893
Hin1II	CATG	3 cut(s)	308, 542, 891
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HinfI	GANTC	6 cut(s)	117, 383, 582, 640, 806, 916
HphI	GGTGA	3 cut(s)	52, 449, 806
Hpy166II	GTNNAC	4 cut(s)	246, 367, 845, 1020
Hpy188I	TCNGA	3 cut(s)	96, 162, 921
Hpy188III	TCNNGA	5 cut(s)	353, 512, 637, 864, 933
Hpy8I	GTNNAC	4 cut(s)	246, 367, 845, 1020
HpyAV	CCTTC	3 cut(s)	21, 489, 976
HpyCH4III	ACNGT	6 cut(s)	36, 71, 350, 392, 549, 802
HpyCH4V	TGCA	7 cut(s)	106, 542, 710, 734, 957, 989, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 275, 963, 995
HpyF3I	CTNAG	7 cut(s)	150, 161, 274, 354, 421, 761, 920
Hsp92II	CATG	3 cut(s)	308, 542, 891
KflI	GGGWCCC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	73, 184, 295, 360, 607
LmnI	GCTCC	3 cut(s)	128, 259, 971
Lsp1109I	GCAGC	3 cut(s)	253, 313, 973
LweI	GCATC	4 cut(s)	136, 313, 697, 998
MaeIII	GTNAC	3 cut(s)	65, 751, 904
MalI	GATC	5 cut(s)	75, 186, 297, 362, 609
MboI	GATC	5 cut(s)	73, 184, 295, 360, 607
MboII	GAAGA	6 cut(s)	3, 392, 500, 716, 846, 1065
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	256, 895
MluCI	AATT	6 cut(s)	285, 372, 477, 561, 719, 900
MlyI	GAGTC	3 cut(s)	392, 576, 634
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	56, 133, 397, 791, 840, 972, 1004
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	3 cut(s)	84, 281, 974
MslI	CAYNNNNRTG	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	486
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	1049
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	4 cut(s)	14, 275, 963, 995
NdeII	GATC	5 cut(s)	73, 184, 295, 360, 607
NlaIII	CATG	3 cut(s)	308, 542, 891
NlaIV	GGNNCC	5 cut(s)	236, 500, 501, 893, 967
NmuCI	GTSAC	2 cut(s)	751, 904
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	489
PctI	GAATGC	1 cut(s)	1049
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	117, 806, 916
PflMI	CCANNNNNTGG	1 cut(s)	491
PkrI	GCNGC	3 cut(s)	268, 328, 988
PleI	GAGTC	3 cut(s)	391, 576, 634
PpsI	GAGTC	3 cut(s)	391, 576, 634
PpuMI	RGGWCCY	1 cut(s)	499
PsiI	TTATAA	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	5 cut(s)	236, 500, 501, 893, 967
PspOMI	GGGCCC	1 cut(s)	891
PspPI	GGNCC	4 cut(s)	482, 499, 891, 892
PspPPI	RGGWCCY	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	5 cut(s)	245, 316, 366, 389, 672
RsaNI	GTAC	5 cut(s)	244, 315, 365, 388, 671
RseI	CAYNNNNRTG	1 cut(s)	974
SaqAI	TTAA	3 cut(s)	84, 281, 974
SatI	GCNGC	3 cut(s)	267, 327, 987
Sau3AI	GATC	5 cut(s)	73, 184, 295, 360, 607
Sau96I	GGNCC	4 cut(s)	482, 499, 891, 892
SchI	GAGTC	3 cut(s)	392, 576, 634
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	2 cut(s)	256, 895
SfaNI	GCATC	4 cut(s)	136, 313, 697, 998
SfcI	CTRYAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	482, 499
SmiMI	CAYNNNNRTG	1 cut(s)	974
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	6 cut(s)	285, 372, 477, 561, 719, 900
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	6 cut(s)	36, 71, 350, 392, 549, 802
TaqI	TCGA	1 cut(s)	832
TasI	AATT	6 cut(s)	285, 372, 477, 561, 719, 900
TatI	WGTACW	3 cut(s)	243, 314, 670
TfiI	GAWTC	3 cut(s)	117, 806, 916
Tru1I	TTAA	3 cut(s)	84, 281, 974
Tru9I	TTAA	3 cut(s)	84, 281, 974
TscAI	CASTG	4 cut(s)	76, 253, 397, 816
TseFI	GTSAC	2 cut(s)	751, 904
TseI	GCWGC	3 cut(s)	266, 326, 986
Tsp45I	GTSAC	2 cut(s)	751, 904
TspDTI	ATGAA	3 cut(s)	669, 717, 876
TspRI	CASTG	4 cut(s)	76, 253, 397, 816
Van91I	CCANNNNNTGG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	482, 499
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.