Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

28325276 .. 28329438

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACAGTTGGTGATAAGGTGTCTTGGAGTTGGAGGTTACAGTGATCATAACATTAACACTAATCAGAAACCAATGCAAGGAGTTAGATTCAGTAGTGGAGCAGCTTCTTTTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGGCACAAGGGTCAGGCTGGAAATATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTCGGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAACGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTTGATTGTCTTGTAATTGGTCCGGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCAATTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTGGCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACGTGAGCAATTACTATCTCTTGCAAAAAGGATTGGTGGTGTCACTATACTTAGGAAAGGAAAAGCTGACCTCATTAGTGATGGTGAGACAGTTGAATCAGTGAGCATATATGGTTCTCCTCGAAGATGTGGTGGACAGGGAGATATACTTTTTGGAAGCGTTGCTATATTTCTTTCATGGGCCCGTCAAATTGTCACAGATGAGAATCTGAGTATCAGTTCCCGAAACCCCACAATGTTGGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCCCTCGCTTTTGAGAATAAGAAAAGGTCAACTCTTACTACTGACATCATAGAATGCTTGGGAAGAAGACTTGTCCGCAGAGAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

362

Amino Acids

39.55

Weight (kDa)

7.55

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	77 - 352	5.8e-47	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	243
AciI	CCGC	2 cut(s)	302, 1075
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	2 cut(s)	188, 312
AcvI	CACGTG	1 cut(s)	722
AfaI	GTAC	4 cut(s)	254, 325, 375, 681
AfiI	CCNNNNNNNGG	3 cut(s)	107, 500, 505
AgsI	TTSAA	1 cut(s)	815
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
AluBI	AGCT	6 cut(s)	17, 134, 230, 354, 423, 785
AluI	AGCT	6 cut(s)	17, 134, 230, 354, 423, 785
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	2 cut(s)	188, 312
AoxI	GGCC	2 cut(s)	496, 900
ApaI	GGGCCC	1 cut(s)	904
ApeKI	GCWGC	4 cut(s)	131, 275, 335, 995
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	5 cut(s)	491, 496, 508, 900, 901
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	3 cut(s)	52, 458, 815
AvaII	GGWCC	2 cut(s)	491, 508
BaeGI	GKGCMC	1 cut(s)	904
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	904
BbrPI	CACGTG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	1072
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	143, 262, 322, 982
BccI	CCATC	4 cut(s)	457, 575, 581, 794
BceAI	ACGGC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	4 cut(s)	132, 276, 336, 996
BlsI	GCNGC	4 cut(s)	133, 277, 337, 997
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	2 cut(s)	491, 508
BmgT120I	GGNCC	5 cut(s)	491, 496, 508, 900, 901
BmiI	GGNNCC	5 cut(s)	245, 509, 510, 902, 976
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	4 cut(s)	145, 322, 706, 1007
BpiI	GAAGAC	1 cut(s)	1072
BpuMI	CCSGG	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 500, 505
Bse1I	ACTGG	2 cut(s)	262, 614
Bse3DI	GCAATG	1 cut(s)	966
Bse8I	GATNNNNATC	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	4 cut(s)	415, 468, 592, 998
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	3 cut(s)	107, 500, 505
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	5 cut(s)	150, 161, 297, 354, 920
BseNI	ACTGG	2 cut(s)	262, 614
BseRI	GAGGAG	1 cut(s)	828
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	143, 262, 322, 982
BshFI	GGCC	2 cut(s)	498, 902
BshNI	GGYRCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	295, 521
BslI	CCNNNNNNNGG	3 cut(s)	107, 500, 505
BsmAI	GTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	295, 521
BsmI	GAATGC	1 cut(s)	1058
BsnI	GGCC	2 cut(s)	498, 902
Bsp120I	GGGCCC	1 cut(s)	900
Bsp1286I	GDGCHC	2 cut(s)	265, 904
Bsp1407I	TGTACA	2 cut(s)	323, 679
Bsp143I	GATC	5 cut(s)	73, 193, 304, 369, 616
BspACI	CCGC	2 cut(s)	302, 1075
BspANI	GGCC	2 cut(s)	498, 902
BspCNI	CTCAG	5 cut(s)	151, 162, 296, 355, 921
BspLI	GGNNCC	5 cut(s)	245, 509, 510, 902, 976
BspPI	GGATC	2 cut(s)	188, 312
BspT107I	GGYRCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	966
BsrGI	TGTACA	2 cut(s)	323, 679
BsrI	ACTGG	2 cut(s)	262, 614
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	5 cut(s)	73, 193, 304, 369, 616
BssT1I	CCWWGG	1 cut(s)	499
Bst4CI	ACNGT	6 cut(s)	36, 71, 359, 401, 558, 811
Bst6I	CTCTTC	1 cut(s)	384
BstAUI	TGTACA	2 cut(s)	323, 679
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	6, 549, 973
BstDEI	CTNAG	7 cut(s)	159, 170, 283, 363, 430, 770, 929
BstF5I	GGATG	4 cut(s)	415, 468, 592, 998
BstKTI	GATC	5 cut(s)	76, 196, 307, 372, 619
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	5 cut(s)	73, 193, 304, 369, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 284, 972, 1004
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	143, 262, 322, 982
BstV2I	GAAGAC	1 cut(s)	1072
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	498, 902
BtsCI	GGATG	4 cut(s)	415, 468, 592, 998
BtsIMutI	CAGTG	4 cut(s)	76, 255, 406, 825
Cac8I	GCNNGC	3 cut(s)	6, 549, 973
Cfr13I	GGNCC	5 cut(s)	491, 496, 508, 900, 901
Csp6I	GTAC	4 cut(s)	253, 324, 374, 680
CviAII	CATG	3 cut(s)	314, 548, 897
CviQI	GTAC	4 cut(s)	253, 324, 374, 680
DdeI	CTNAG	7 cut(s)	159, 170, 283, 363, 430, 770, 929
DpnI	GATC	5 cut(s)	75, 195, 306, 371, 618
DpnII	GATC	5 cut(s)	73, 193, 304, 369, 616
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	491, 508
Eco72I	CACGTG	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	632
EcoT14I	CCWWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	3 cut(s)	317, 551, 900
FaqI	GGGAC	2 cut(s)	295, 521
FatI	CATG	3 cut(s)	313, 547, 896
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	132, 276, 336, 996
FokI	GGATG	4 cut(s)	422, 475, 599, 985
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	4 cut(s)	132, 276, 336, 996
GluI	GCNGC	4 cut(s)	132, 276, 336, 996
HaeIII	GGCC	2 cut(s)	498, 902
HapII	CCGG	1 cut(s)	494
Hin1II	CATG	3 cut(s)	317, 551, 900
HincII	GTYRAC	1 cut(s)	1029
HindII	GTYRAC	1 cut(s)	1029
HinfI	GANTC	7 cut(s)	117, 392, 591, 649, 815, 925, 1082
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	3 cut(s)	52, 458, 815
Hpy166II	GTNNAC	4 cut(s)	255, 376, 854, 1029
Hpy188I	TCNGA	3 cut(s)	96, 171, 930
Hpy188III	TCNNGA	4 cut(s)	362, 521, 646, 942
Hpy8I	GTNNAC	4 cut(s)	255, 376, 854, 1029
HpyAV	CCTTC	3 cut(s)	21, 498, 985
HpyCH4III	ACNGT	6 cut(s)	36, 71, 359, 401, 558, 811
HpyCH4IV	ACGT	2 cut(s)	438, 721
HpyCH4V	TGCA	6 cut(s)	106, 551, 719, 743, 966, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 284, 972, 1004
HpyF3I	CTNAG	7 cut(s)	159, 170, 283, 363, 430, 770, 929
HpySE526I	ACGT	2 cut(s)	438, 721
Hsp92II	CATG	3 cut(s)	317, 551, 900
KflI	GGGWCCC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	5 cut(s)	73, 193, 304, 369, 616
LmnI	GCTCC	3 cut(s)	128, 268, 980
Lsp1109I	GCAGC	4 cut(s)	143, 262, 322, 982
LweI	GCATC	4 cut(s)	145, 322, 706, 1007
MaeII	ACGT	2 cut(s)	438, 721
MaeIII	GTNAC	3 cut(s)	65, 760, 913
MalI	GATC	5 cut(s)	75, 195, 306, 371, 618
MboI	GATC	5 cut(s)	73, 193, 304, 369, 616
MboII	GAAGA	7 cut(s)	3, 401, 509, 725, 855, 1074, 1077
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	265, 904
MluCI	AATT	6 cut(s)	294, 381, 486, 570, 728, 909
MlyI	GAGTC	3 cut(s)	401, 585, 643
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	56, 142, 406, 800, 849, 981, 1013
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	4 cut(s)	84, 290, 983, 1087
MslI	CAYNNNNRTG	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	495
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	1058
MwoI	GCNNNNNNNGC	4 cut(s)	14, 284, 972, 1004
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	5 cut(s)	73, 193, 304, 369, 616
NlaIII	CATG	3 cut(s)	317, 551, 900
NlaIV	GGNNCC	5 cut(s)	245, 509, 510, 902, 976
NmuCI	GTSAC	2 cut(s)	760, 913
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PctI	GAATGC	1 cut(s)	1058
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	4 cut(s)	117, 815, 925, 1082
PkrI	GCNGC	4 cut(s)	133, 277, 337, 997
PleI	GAGTC	3 cut(s)	400, 585, 643
PmaCI	CACGTG	1 cut(s)	722
PmlI	CACGTG	1 cut(s)	722
PpsI	GAGTC	3 cut(s)	400, 585, 643
Ppu21I	YACGTR	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	508
PsiI	TTATAA	1 cut(s)	347
Psp1406I	AACGTT	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	508
PspCI	CACGTG	1 cut(s)	722
PspN4I	GGNNCC	5 cut(s)	245, 509, 510, 902, 976
PspOMI	GGGCCC	1 cut(s)	900
PspPI	GGNCC	5 cut(s)	491, 496, 508, 900, 901
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	4 cut(s)	254, 325, 375, 681
RsaNI	GTAC	4 cut(s)	253, 324, 374, 680
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	4 cut(s)	84, 290, 983, 1087
SatI	GCNGC	4 cut(s)	132, 276, 336, 996
Sau3AI	GATC	5 cut(s)	73, 193, 304, 369, 616
Sau96I	GGNCC	5 cut(s)	491, 496, 508, 900, 901
SchI	GAGTC	3 cut(s)	401, 585, 643
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	2 cut(s)	265, 904
SfaNI	GCATC	4 cut(s)	145, 322, 706, 1007
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	2 cut(s)	491, 508
SmiMI	CAYNNNNRTG	1 cut(s)	983
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	6 cut(s)	294, 381, 486, 570, 728, 909
SsiI	CCGC	2 cut(s)	302, 1075
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	6 cut(s)	36, 71, 359, 401, 558, 811
TaiI	ACGT	2 cut(s)	441, 724
TaqI	TCGA	1 cut(s)	841
TasI	AATT	6 cut(s)	294, 381, 486, 570, 728, 909
TatI	WGTACW	3 cut(s)	252, 323, 679
TfiI	GAWTC	4 cut(s)	117, 815, 925, 1082
Tru1I	TTAA	4 cut(s)	84, 290, 983, 1087
Tru9I	TTAA	4 cut(s)	84, 290, 983, 1087
TscAI	CASTG	4 cut(s)	76, 262, 406, 825
TseFI	GTSAC	2 cut(s)	760, 913
TseI	GCWGC	4 cut(s)	131, 275, 335, 995
Tsp45I	GTSAC	2 cut(s)	760, 913
TspDTI	ATGAA	3 cut(s)	678, 726, 885
TspRI	CASTG	4 cut(s)	76, 262, 406, 825
VpaK11BI	GGWCC	2 cut(s)	491, 508
XceI	RCATGY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.