Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

18412765 .. 18418035

Gene Structure 5271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTTGGAGTGAATTGTGGGTTTGGTGCAAAGAGTTGTATTTATAAGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACAGTTGGTGATAAGGTGTCTTGGAGTTGGAGGTTATAGTGATCATAACATTAACACTGATCAGAAAACAATGCAAGGAGTTGGATCCAGTAGTGGAGCTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCGAATAAAGACAAGGGTCAGGCTGGAAAGATAGCTGTTATTGGCGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAGATTGGTGCGGATCTGTCTCATGTTTTCTGTACAAGAGATGCTGCTTCAGTTATAAAAAGCTACAGTCCTGAATTGATTGTGCACCCAATTTTAGAGGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAAGGTTCTTGGTGAAGTTGATAAATGGATGGAAAGATTTGATTGTCTTGTCATTGGCCCTGGCCTTGGAAGGGACCCGTTTCTTCTGGACTGTGTCAGCAATATCATAAAGCATGCAAGACAGTCCAATGTTCCACTTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTCTCTTGATCTTGTAAGTGGATACCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAGACAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACATGAGCAACTACTGTCTCTTGCAAAAAGGATTGGGGGTGTAACTATACTGAGGAAAGGAAAAGATGATCTCATTAGTGATGGTGAGACAGTTGAATCAGTGAGCATATATGGTTCTCCTCGAAGATGTGGCGGACAGGGAGATATACTTTCTGGAAGCGTTGCTGTATTTCTTTCATGGGCCCGTCAAACTATCAGAGATGAAAATTTGAGTATCAGTTCTCGGAACCCCACAATGCTGGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCTCTCGCTTTTAAGACTAAGAAAAGGTCAACCCTCACTACCGACATCATAGAATGCTTGGGAAGAAGTTTGCAGGATATTTGTCCAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

377

Amino Acids

40.56

Weight (kDa)

6.33

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	89 - 364	2.2e-48	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	45, 383
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	3 cut(s)	276, 338, 888
AclWI	GGATC	4 cut(s)	156, 169, 224, 348
AcsI	RAATTY	1 cut(s)	961
AcuI	CTGAAG	2 cut(s)	42, 360
AfaI	GTAC	3 cut(s)	290, 361, 717
AfiI	CCNNNNNNNGG	2 cut(s)	536, 541
AgsI	TTSAA	1 cut(s)	851
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	6 cut(s)	49, 62, 176, 266, 390, 459
AluI	AGCT	6 cut(s)	49, 62, 176, 266, 390, 459
Alw21I	GWGCWC	2 cut(s)	301, 414
Alw26I	GTCTC	3 cut(s)	351, 777, 836
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	4 cut(s)	156, 169, 224, 348
AoxI	GGCC	3 cut(s)	526, 532, 936
ApaI	GGGCCC	1 cut(s)	940
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	311, 371, 1031
ApoI	RAATTY	1 cut(s)	961
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	4 cut(s)	527, 544, 936, 937
AsuHPI	GGTGA	3 cut(s)	97, 494, 851
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	2 cut(s)	414, 940
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	940
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
Bbv12I	GWGCWC	2 cut(s)	301, 414
BbvI	GCAGC	3 cut(s)	298, 358, 1018
BccI	CCATC	4 cut(s)	493, 611, 617, 830
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	659
BclI	TGATCA	2 cut(s)	118, 136
BcoDI	GTCTC	3 cut(s)	351, 777, 836
BfmI	CTRYAG	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	659
BisI	GCNGC	3 cut(s)	312, 372, 1032
BlsI	GCNGC	3 cut(s)	313, 373, 1033
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	4 cut(s)	527, 544, 936, 937
BmiI	GGNNCC	7 cut(s)	163, 281, 545, 546, 938, 983, 1012
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	4 cut(s)	181, 358, 742, 1043
BoxI	GACNNNNGTC	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	529, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 541
Bse1I	ACTGG	3 cut(s)	165, 298, 1121
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	529, 535
BseGI	GGATG	3 cut(s)	451, 504, 628
BseLI	CCNNNNNNNGG	2 cut(s)	536, 541
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	186, 197, 333, 797
BseNI	ACTGG	3 cut(s)	165, 298, 1121
BseRI	GAGGAG	2 cut(s)	440, 864
BseSI	GKGCMC	2 cut(s)	414, 940
BseXI	GCAGC	3 cut(s)	298, 358, 1018
BseYI	CCCAGC	1 cut(s)	994
BshFI	GGCC	3 cut(s)	528, 534, 938
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	2 cut(s)	301, 414
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	536, 541
BsmAI	GTCTC	3 cut(s)	351, 777, 836
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	1094
BsnI	GGCC	3 cut(s)	528, 534, 938
Bsp120I	GGGCCC	1 cut(s)	936
Bsp1286I	GDGCHC	3 cut(s)	301, 414, 940
Bsp1407I	TGTACA	2 cut(s)	359, 715
Bsp143I	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
BspACI	CCGC	3 cut(s)	276, 338, 888
BspANI	GGCC	3 cut(s)	528, 534, 938
BspCNI	CTCAG	4 cut(s)	187, 198, 332, 798
BspLI	GGNNCC	7 cut(s)	163, 281, 545, 546, 938, 983, 1012
BspPI	GGATC	4 cut(s)	156, 169, 224, 348
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	1002
BsrGI	TGTACA	2 cut(s)	359, 715
BsrI	ACTGG	3 cut(s)	165, 298, 1121
BssECI	CCNNGG	2 cut(s)	529, 535
BssMI	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	8 cut(s)	81, 395, 437, 563, 594, 724, 771, 847
BstAUI	TGTACA	2 cut(s)	359, 715
BstC8I	GCNNGC	3 cut(s)	51, 585, 1009
BstDEI	CTNAG	6 cut(s)	195, 206, 319, 466, 806, 1053
BstF5I	GGATG	3 cut(s)	451, 504, 628
BstKTI	GATC	7 cut(s)	121, 139, 164, 232, 343, 655, 826
BstMAI	GTCTC	3 cut(s)	351, 777, 836
BstMBI	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 320, 1008, 1040
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	587
BstPAI	GACNNNNGTC	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	2 cut(s)	414, 940
BstV1I	GCAGC	3 cut(s)	298, 358, 1018
BstX2I	RGATCY	2 cut(s)	161, 340
BstXI	CCANNNNNNTGG	1 cut(s)	994
BstYI	RGATCY	2 cut(s)	161, 340
BsuI	GTATCC	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	528, 534, 938
BtsCI	GGATG	3 cut(s)	451, 504, 628
BtsIMutI	CAGTG	4 cut(s)	132, 291, 442, 861
Cac8I	GCNNGC	3 cut(s)	51, 585, 1009
Cfr13I	GGNCC	4 cut(s)	527, 544, 936, 937
Csp6I	GTAC	3 cut(s)	289, 360, 716
CviAII	CATG	4 cut(s)	350, 584, 758, 933
CviQI	GTAC	3 cut(s)	289, 360, 716
DdeI	CTNAG	6 cut(s)	195, 206, 319, 466, 806, 1053
DpnI	GATC	7 cut(s)	120, 138, 163, 231, 342, 654, 825
DpnII	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
EciI	GGCGGA	1 cut(s)	903
Eco130I	CCWWGG	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	2 cut(s)	42, 360
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	4 cut(s)	353, 587, 761, 936
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	4 cut(s)	349, 583, 757, 932
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	2 cut(s)	118, 136
Fnu4HI	GCNGC	3 cut(s)	312, 372, 1032
FokI	GGATG	3 cut(s)	458, 511, 635
FriOI	GRGCYC	1 cut(s)	940
Fsp4HI	GCNGC	3 cut(s)	312, 372, 1032
GluI	GCNGC	3 cut(s)	312, 372, 1032
GsaI	CCCAGC	1 cut(s)	998
HaeIII	GGCC	3 cut(s)	528, 534, 938
Hin1II	CATG	4 cut(s)	353, 587, 761, 936
HincII	GTYRAC	1 cut(s)	1065
HindII	GTYRAC	1 cut(s)	1065
HinfI	GANTC	4 cut(s)	428, 627, 685, 851
HphI	GGTGA	3 cut(s)	97, 494, 851
Hpy166II	GTNNAC	3 cut(s)	291, 412, 1065
Hpy188I	TCNGA	5 cut(s)	141, 207, 234, 953, 981
Hpy188III	TCNNGA	5 cut(s)	398, 557, 650, 682, 909
Hpy8I	GTNNAC	3 cut(s)	291, 412, 1065
HpyAV	CCTTC	3 cut(s)	66, 534, 1021
HpyCH4III	ACNGT	8 cut(s)	81, 395, 437, 563, 594, 724, 771, 847
HpyCH4V	TGCA	9 cut(s)	29, 151, 412, 587, 755, 779, 1002, 1034, 1108
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 320, 1008, 1040
HpyF3I	CTNAG	6 cut(s)	195, 206, 319, 466, 806, 1053
Hsp92II	CATG	4 cut(s)	353, 587, 761, 936
KflI	GGGWCCC	1 cut(s)	544
Ksp22I	TGATCA	2 cut(s)	118, 136
Kzo9I	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
LmnI	GCTCC	3 cut(s)	173, 304, 1016
Lsp1109I	GCAGC	3 cut(s)	298, 358, 1018
LweI	GCATC	4 cut(s)	181, 358, 742, 1043
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	7 cut(s)	120, 138, 163, 231, 342, 654, 825
MboI	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
MboII	GAAGA	5 cut(s)	48, 545, 761, 891, 1110
MflI	RGATCY	2 cut(s)	161, 340
MhlI	GDGCHC	3 cut(s)	301, 414, 940
MluCI	AATT	4 cut(s)	13, 401, 417, 961
MlyI	GAGTC	3 cut(s)	437, 621, 679
MmeI	TCCRAC	2 cut(s)	85, 139
MnlI	CCTC	8 cut(s)	101, 178, 418, 442, 801, 885, 1017, 1079
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	4 cut(s)	129, 326, 1019, 1047
MslI	CAYNNNNRTG	1 cut(s)	1019
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	1094
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	4 cut(s)	59, 320, 1008, 1040
NdeII	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
NlaIII	CATG	4 cut(s)	353, 587, 761, 936
NlaIV	GGNNCC	7 cut(s)	163, 281, 545, 546, 938, 983, 1012
NspI	RCATGY	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	1094
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	851
PflFI	GACNNNGTC	1 cut(s)	563
PkrI	GCNGC	3 cut(s)	313, 373, 1033
PleI	GAGTC	3 cut(s)	436, 621, 679
PpsI	GAGTC	3 cut(s)	436, 621, 679
PpuMI	RGGWCCY	1 cut(s)	544
PshAI	GACNNNNGTC	1 cut(s)	246
PsiI	TTATAA	2 cut(s)	45, 383
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	7 cut(s)	163, 281, 545, 546, 938, 983, 1012
PspOMI	GGGCCC	1 cut(s)	936
PspPI	GGNCC	4 cut(s)	527, 544, 936, 937
PspPPI	RGGWCCY	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	161, 340
PsyI	GACNNNGTC	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	290, 361, 717
RsaNI	GTAC	3 cut(s)	289, 360, 716
RseI	CAYNNNNRTG	1 cut(s)	1019
SaqAI	TTAA	4 cut(s)	129, 326, 1019, 1047
SatI	GCNGC	3 cut(s)	312, 372, 1032
Sau3AI	GATC	7 cut(s)	118, 136, 161, 229, 340, 652, 823
Sau96I	GGNCC	4 cut(s)	527, 544, 936, 937
SchI	GAGTC	3 cut(s)	437, 621, 679
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	3 cut(s)	301, 414, 940
SfaNI	GCATC	4 cut(s)	181, 358, 742, 1043
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SphI	GCATGC	1 cut(s)	587
Sse9I	AATT	4 cut(s)	13, 401, 417, 961
SsiI	CCGC	3 cut(s)	276, 338, 888
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	8 cut(s)	81, 395, 437, 563, 594, 724, 771, 847
TaqI	TCGA	1 cut(s)	877
TasI	AATT	4 cut(s)	13, 401, 417, 961
TatI	WGTACW	3 cut(s)	288, 359, 715
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	4 cut(s)	129, 326, 1019, 1047
Tru9I	TTAA	4 cut(s)	129, 326, 1019, 1047
TscAI	CASTG	4 cut(s)	139, 298, 442, 861
TseI	GCWGC	3 cut(s)	311, 371, 1031
TspDTI	ATGAA	4 cut(s)	714, 762, 921, 972
TspRI	CASTG	4 cut(s)	139, 298, 442, 861
Tth111I	GACNNNGTC	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	544
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.