Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004471

Physical Location & Seq

Genomic Coordinates Reverse (-)

37957956 .. 37962162

Gene Structure 4207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG219000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTTGTAAAACTGGGAGTGAATTCTGGGTTTGGTGCAAAGAGTTGTATTTGTATGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACAGTTGGTGATAAGGTGTCTTGGAGTTGGAGGTTACAGTGATCATAACGTTAACACTAATCAGAAACCAATGCAAGGAGTTAGATTCAGTAGTGGAGCTACTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGACACAAGGGTCAGGCTGGAAATATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTCAGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAAGGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTCGATTGTCTTGTAATTGGTCCGGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCGATTGTCGTAGATGGGGATGGACTCTTTCTTATTACAAACTGTCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCATGTGAGCAATTACTATCTCTTGCAAAAAGGTATTATCTATTTCAAGATTCTTTTGTATTGTGTTTTATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Carb_kinase

Protein Analysis

279

Amino Acids

30.61

Weight (kDa)

6.08

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	92 - 258	2e-32	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19150 AT5G19150
fragaria_vesca	FvH4_4g14760 FvH4_4g14760 FvH4_4g14760 FvH4_4g14760
malus_domestica	MD16G1186000.v1.1
prunus_persica	Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1 Prupe.1G152800_v2.0.a1
pyrus_communis	pycom16g15570
rosa_chinensis	RchiOBHm_Chr0c32g0501471 RchiOBHm_Chr0c32g0501661 RchiOBHm_Chr3g0483801 RchiOBHm_Chr4g0417841
rosa_laevigata	RLG00000007895 RLG00000023259
rosa_multiflora	Rmu_sc0001333.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361250 Rroxscaffold_6G00398130
rosa_rugosa	Rorug04G0149500
rosa_samantha	Rh3AG256800 Rh3CG291600 Rh4AG212000 Rh4BG219000 Rh4CG222700 Rh4DG209800
rosa_wichuraiana	Rw3G023200 Rw4G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AasI	GACNNNNNNGTC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	1 cut(s)	347
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	2 cut(s)	233, 357
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	51, 369
AfaI	GTAC	4 cut(s)	299, 370, 420, 726
AfiI	CCNNNNNNNGG	3 cut(s)	161, 545, 550
AgsI	TTSAA	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	5 cut(s)	71, 185, 275, 399, 468
AluI	AGCT	5 cut(s)	71, 185, 275, 399, 468
Alw21I	GWGCWC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	233, 357
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	320, 380
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	536, 541, 553
AsuC2I	CCSGG	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	106, 503
AvaII	GGWCC	2 cut(s)	536, 553
BanI	GGYRCC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	46, 78
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	307, 367
BccI	CCATC	3 cut(s)	502, 620, 626
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	2 cut(s)	321, 381
BlsI	GCNGC	2 cut(s)	322, 382
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	2 cut(s)	536, 553
BmgT120I	GGNCC	3 cut(s)	536, 541, 553
BmiI	GGNNCC	3 cut(s)	290, 554, 555
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	190, 367, 751
BmuI	ACTGGG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 545, 550
Bse1I	ACTGG	2 cut(s)	18, 307
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	3 cut(s)	460, 513, 637
BseLI	CCNNNNNNNGG	3 cut(s)	161, 545, 550
BseMII	CTCAG	4 cut(s)	195, 206, 342, 399
BseNI	ACTGG	2 cut(s)	18, 307
BseXI	GCAGC	2 cut(s)	307, 367
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	340, 566
BslI	CCNNNNNNNGG	3 cut(s)	161, 545, 550
BsmFI	GGGAC	2 cut(s)	340, 566
BsnI	GGCC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	2 cut(s)	368, 724
Bsp143I	GATC	5 cut(s)	127, 238, 349, 414, 661
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	4 cut(s)	196, 207, 341, 400
BspLI	GGNNCC	3 cut(s)	290, 554, 555
BspPI	GGATC	2 cut(s)	233, 357
BspT107I	GGYRCC	1 cut(s)	288
BsrGI	TGTACA	2 cut(s)	368, 724
BsrI	ACTGG	2 cut(s)	18, 307
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	5 cut(s)	127, 238, 349, 414, 661
BssT1I	CCWWGG	1 cut(s)	544
Bst4CI	ACNGT	6 cut(s)	90, 125, 404, 446, 603, 656
Bst6I	CTCTTC	1 cut(s)	429
BstAUI	TGTACA	2 cut(s)	368, 724
BstC8I	GCNNGC	2 cut(s)	60, 594
BstDEI	CTNAG	5 cut(s)	204, 215, 328, 408, 475
BstF5I	GGATG	3 cut(s)	460, 513, 637
BstKTI	GATC	5 cut(s)	130, 241, 352, 417, 664
BstMBI	GATC	5 cut(s)	127, 238, 349, 414, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 329
BstNSI	RCATGY	2 cut(s)	596, 768
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	307, 367
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	460, 513, 637
BtsIMutI	CAGTG	3 cut(s)	130, 300, 451
Cac8I	GCNNGC	2 cut(s)	60, 594
Cfr13I	GGNCC	3 cut(s)	536, 541, 553
Csp6I	GTAC	4 cut(s)	298, 369, 419, 725
CviAII	CATG	3 cut(s)	359, 593, 765
CviQI	GTAC	4 cut(s)	298, 369, 419, 725
DdeI	CTNAG	5 cut(s)	204, 215, 328, 408, 475
DpnI	GATC	5 cut(s)	129, 240, 351, 416, 663
DpnII	GATC	5 cut(s)	127, 238, 349, 414, 661
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	544
Eco32I	GATATC	1 cut(s)	677
Eco47I	GGWCC	2 cut(s)	536, 553
Eco57I	CTGAAG	2 cut(s)	51, 369
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	3 cut(s)	362, 596, 768
FaqI	GGGAC	2 cut(s)	340, 566
FatI	CATG	3 cut(s)	358, 592, 764
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	321, 381
FokI	GGATG	3 cut(s)	467, 520, 644
Fsp4HI	GCNGC	2 cut(s)	321, 381
GluI	GCNGC	2 cut(s)	321, 381
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	3 cut(s)	362, 596, 768
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	6 cut(s)	171, 437, 516, 636, 694, 812
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	106, 503
Hpy166II	GTNNAC	3 cut(s)	139, 300, 421
Hpy188I	TCNGA	3 cut(s)	150, 216, 615
Hpy188III	TCNNGA	5 cut(s)	407, 566, 659, 691, 809
Hpy8I	GTNNAC	3 cut(s)	139, 300, 421
HpyAV	CCTTC	2 cut(s)	75, 543
HpyCH4III	ACNGT	6 cut(s)	90, 125, 404, 446, 603, 656
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	38, 160, 596, 764, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 329
HpyF3I	CTNAG	5 cut(s)	204, 215, 328, 408, 475
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	362, 596, 768
KflI	GGGWCCC	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	127
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	127, 238, 349, 414, 661
LmnI	GCTCC	2 cut(s)	182, 313
LpnPI	CCDG	9 cut(s)	12, 44, 245, 249, 288, 420, 551, 552, 704
Lsp1109I	GCAGC	2 cut(s)	307, 367
LweI	GCATC	3 cut(s)	190, 367, 751
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	5 cut(s)	129, 240, 351, 416, 663
MboI	GATC	5 cut(s)	127, 238, 349, 414, 661
MboII	GAAGA	4 cut(s)	57, 446, 554, 770
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	5 cut(s)	22, 339, 426, 531, 773
MlyI	GAGTC	3 cut(s)	446, 630, 688
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	110, 187, 451
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	138, 335
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	68, 329
NciI	CCSGG	1 cut(s)	540
NdeII	GATC	5 cut(s)	127, 238, 349, 414, 661
NlaIII	CATG	3 cut(s)	362, 596, 768
NlaIV	GGNNCC	3 cut(s)	290, 554, 555
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	596, 768
PaeI	GCATGC	1 cut(s)	596
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	171, 516, 812
PkrI	GCNGC	2 cut(s)	322, 382
PleI	GAGTC	3 cut(s)	445, 630, 688
PpsI	GAGTC	3 cut(s)	445, 630, 688
PpuMI	RGGWCCY	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	290, 554, 555
PspPI	GGNCC	3 cut(s)	536, 541, 553
PspPPI	RGGWCCY	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	4 cut(s)	299, 370, 420, 726
RsaNI	GTAC	4 cut(s)	298, 369, 419, 725
SaqAI	TTAA	2 cut(s)	138, 335
SatI	GCNGC	2 cut(s)	321, 381
Sau3AI	GATC	5 cut(s)	127, 238, 349, 414, 661
Sau96I	GGNCC	3 cut(s)	536, 541, 553
SchI	GAGTC	3 cut(s)	446, 630, 688
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	3 cut(s)	190, 367, 751
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	2 cut(s)	536, 553
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	5 cut(s)	22, 339, 426, 531, 773
SsiI	CCGC	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	6 cut(s)	90, 125, 404, 446, 603, 656
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	519
TasI	AATT	5 cut(s)	22, 339, 426, 531, 773
TatI	WGTACW	3 cut(s)	297, 368, 724
TfiI	GAWTC	3 cut(s)	171, 516, 812
Tru1I	TTAA	2 cut(s)	138, 335
Tru9I	TTAA	2 cut(s)	138, 335
TscAI	CASTG	3 cut(s)	130, 307, 451
TseI	GCWGC	2 cut(s)	320, 380
TspDTI	ATGAA	2 cut(s)	723, 771
TspRI	CASTG	3 cut(s)	130, 307, 451
VpaK11BI	GGWCC	2 cut(s)	536, 553
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	596, 768
XmnI	GAANNNNTTC	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.