AT5G19350

RNA binding motif

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
6518777 .. 6521483
2707 bp
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UTR
Exon/CDS
Intron
AT5G19350.2

Sequence Viewer

Length: 1278 bp
ATGGCGATGATGCATCCTCCGCAGCCGCCGCAAGGCTCCTATCACCATCCTCAGACGCTCGAAGAAGTTCGAACTCTTTGGATTGGTGATTTGCAGTACTGGGTCGACGAAAATTACCTCACTTCCTGCTTCTCCCAAACCGGCGAGCTCGTTTCTGTCAAGGTAATACGTAACAAGATCACGGGACAGCCAGAGGGGTATGGTTTTATAGAGTTTATATCTCATGCAGCAGCAGAGAGAACTCTGCAGACGTACAATGGGACACAGATGCCTGGAACTGAGTTAACTTTTCGGTTAAATTGGGCTTCTTTTGGTTCAGGACAGAAAGTTGATGCTGGACCTGATCATTCTATCTTTGTTGGAGATTTAGCACCTGATGTTACAGATTATCTTCTTCAAGAGACATTCCGTGTTCATTATTCTTCTGTTAGAGGTGCCAAGGTTGTTACTGATCCAAGTACTGGACGATCAAAGGGTTATGGATTTGTAAAATTTGCAGAGGAAAGTGAAAGGAATCGGGCTATGGCTGAAATGAATGGTTTGTATTGCTCAACAAGGCCTATGCGTATTAGCGCAGCAACACCTAAAAAAAACGTCGGTGTGCAGCAACAATATGTCACCAAAGCTGTTTACCCAGTTACAGTCCCATCTGCAGTTGCTGCACCAGTCCAAGCATACGTTGCTCCACCTGAAAGTGATGTCACCTGTACAACGATTTCAGTTGCCAATTTGGACCAAAATGTTACAGAGGAAGAGCTGAAGAAAGCATTCTCCCAATTAGGAGAGGTTATTTATGTCAAAATACCTGCAACAAAGGGATATGGTTATGTTCAATTCAAAACCAGGCCTTCTGCAGAAGAAGCTGTTCAAAGAATGCAGGGACAAGTGATTGGTCAACAAGCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACAGGATGGTTGGGTTACACAAGCAGATCCGAATCAGTGGAATGGGTATTATGGTTATGGGCAAGGCTATGATGCATATGCTTATGGGGCAACTCAAGATCCATCCGTGTACGCATATGGTGGATATGGCTATCCCCAGTATCCGCAACAGGGAGAGGGTACACAAGACATTTCGAACTCTGCGGCGGGTGGAGTAGCAGGTGCAGAGCAAGAGTTGTATGATCCTCTGGCCACTCCTGATGTAGACAAGTTAAATGCTGCTTACCTTTCGGTTCATGCAAGTGCCATATTAGGAAGGCCAATGTGGCAGCGGACCTCATCGCTCACATCACAATTGGGCAAATGA

Protein Analysis

425

Amino Acids

46.6

Weight (kDa)

5.47

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 26 - 95 1.9e-13 RNA recognition motif
RRM_1 PF00076 118 - 185 3.7e-15 RNA recognition motif
RRM_1 PF00076 235 - 298 1.2e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1121
Acc36I ACCTGC 2 cut(s) 814, 1121
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 461
AccI GTMKAC 2 cut(s) 105, 1176
AciI CCGC 7 cut(s) 20, 26, 29, 1076, 1115, 1118, 1243
AclWI GGATC 4 cut(s) 446, 953, 1025, 1148
AcoI YGGCCR 1 cut(s) 1161
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 779
AfaI GTAC 6 cut(s) 98, 254, 460, 709, 1043, 1093
AfiI CCNNNNNNNGG 3 cut(s) 32, 461, 1082
AgsI TTSAA 4 cut(s) 398, 833, 838, 869
AjnI CCWGG 3 cut(s) 271, 842, 928
AluBI AGCT 4 cut(s) 148, 626, 757, 863
AluI AGCT 4 cut(s) 148, 626, 757, 863
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 4 cut(s) 446, 953, 1025, 1148
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 4 cut(s) 557, 845, 1161, 1229
ApeKI GCWGC 8 cut(s) 22, 227, 230, 575, 604, 659, 1190, 1240
ApoI RAATTY 1 cut(s) 491
Asp700I GAANNNNTTC 3 cut(s) 66, 767, 864
AspLEI GCGC 1 cut(s) 575
AspS9I GGNCC 3 cut(s) 338, 733, 1245
AsuHPI GGTGA 4 cut(s) 35, 98, 610, 694
AsuII TTCGAA 2 cut(s) 70, 1106
AvaII GGWCC 3 cut(s) 338, 733, 1245
BalI TGGCCA 1 cut(s) 1163
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 8 cut(s) 34, 239, 242, 587, 616, 646, 1177, 1252
BccI CCATC 4 cut(s) 54, 655, 932, 1042
BciT130I CCWGG 3 cut(s) 273, 844, 930
BciVI GTATCC 1 cut(s) 1083
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 3 cut(s) 245, 651, 852
BfuAI ACCTGC 2 cut(s) 814, 1121
BfuI GTATCC 1 cut(s) 1083
BglI GCCNNNNNGGC 1 cut(s) 1237
BmcAI AGTACT 2 cut(s) 98, 460
Bme1390I CCNGG 3 cut(s) 273, 844, 930
Bme18I GGWCC 3 cut(s) 338, 733, 1245
BmgT120I GGNCC 3 cut(s) 338, 733, 1245
BmiI GGNNCC 2 cut(s) 37, 436
BmrFI CCNGG 3 cut(s) 273, 844, 930
BmrI ACTGGG 3 cut(s) 109, 629, 1063
BmsI GCATC 5 cut(s) 22, 258, 322, 918, 994
BmuI ACTGGG 3 cut(s) 109, 629, 1063
Bpu14I TTCGAA 2 cut(s) 70, 1106
BpuEI CTTGAG 1 cut(s) 1011
BsaAI YACGTR 1 cut(s) 170
BsaBI GATNNNNATC 1 cut(s) 963
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 461, 1082
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 5 cut(s) 104, 466, 635, 665, 1069
Bse8I GATNNNNATC 1 cut(s) 963
BseBI CCWGG 3 cut(s) 273, 844, 930
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 4 cut(s) 13, 46, 943, 1034
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 3 cut(s) 32, 461, 1082
BseMII CTCAG 2 cut(s) 65, 270
BseNI ACTGG 5 cut(s) 104, 466, 635, 665, 1069
BseXI GCAGC 8 cut(s) 34, 239, 242, 587, 616, 646, 1177, 1252
BsgI GTGCAG 3 cut(s) 623, 645, 1155
BshFI GGCC 4 cut(s) 559, 847, 1163, 1231
BshNI GGYRCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 4 cut(s) 198, 274, 629, 894
BslI CCNNNNNNNGG 3 cut(s) 32, 461, 1082
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 4 cut(s) 198, 274, 629, 894
BsmI GAATGC 2 cut(s) 767, 879
BsnI GGCC 4 cut(s) 559, 847, 1163, 1231
Bsp119I TTCGAA 2 cut(s) 70, 1106
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
BspACI CCGC 7 cut(s) 20, 26, 29, 1076, 1115, 1118, 1243
BspANI GGCC 4 cut(s) 559, 847, 1163, 1231
BspCNI CTCAG 2 cut(s) 64, 271
BspLI GGNNCC 2 cut(s) 37, 436
BspMAI CTGCAG 3 cut(s) 249, 655, 856
BspMI ACCTGC 2 cut(s) 814, 1121
BspPI GGATC 4 cut(s) 446, 953, 1025, 1148
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 2 cut(s) 70, 1106
BspT107I GGYRCC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 5 cut(s) 104, 466, 635, 665, 1069
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 3 cut(s) 273, 844, 930
Bst4CI ACNGT 1 cut(s) 643
Bst6I CTCTTC 1 cut(s) 747
BstAPI GCANNNNNTGC 2 cut(s) 659, 680
BstAUI TGTACA 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 170
BstBI TTCGAA 2 cut(s) 70, 1106
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 51, 279
BstF5I GGATG 4 cut(s) 13, 46, 943, 1034
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 7 cut(s) 180, 346, 454, 470, 961, 1033, 1156
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
BstMWI GCNNNNNNNGC 7 cut(s) 19, 28, 659, 680, 860, 1019, 1237
BstNI CCWGG 3 cut(s) 273, 844, 930
BstSCI CCNGG 3 cut(s) 271, 842, 928
BstSFI CTRYAG 3 cut(s) 245, 651, 852
BstSNI TACGTA 1 cut(s) 170
BstV1I GCAGC 8 cut(s) 34, 239, 242, 587, 616, 646, 1177, 1252
BstX2I RGATCY 2 cut(s) 958, 1030
BstYI RGATCY 2 cut(s) 958, 1030
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 4 cut(s) 559, 847, 1163, 1231
BtgZI GCGATG 2 cut(s) 20, 1236
BtsCI GGATG 4 cut(s) 13, 46, 943, 1034
BtsIMutI CAGTG 1 cut(s) 974
BveI ACCTGC 2 cut(s) 814, 1121
Cac8I GCNNGC 1 cut(s) 146
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 1 cut(s) 575
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 338, 733, 1245
CseI GACGC 1 cut(s) 64
Csp6I GTAC 6 cut(s) 97, 253, 459, 708, 1042, 1092
CviAII CATG 2 cut(s) 224, 1208
CviQI GTAC 6 cut(s) 97, 253, 459, 708, 1042, 1092
DdeI CTNAG 2 cut(s) 51, 279
DpnI GATC 7 cut(s) 179, 345, 453, 469, 960, 1032, 1155
DpnII GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
EaeI YGGCCR 1 cut(s) 1161
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Ecl136II GAGCTC 1 cut(s) 148
Eco105I TACGTA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 2 cut(s) 559, 847
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 338, 733, 1245
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 779
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 3 cut(s) 271, 842, 928
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 2 cut(s) 15, 1009
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 227, 1211
FaqI GGGAC 4 cut(s) 198, 274, 629, 894
FatI CATG 2 cut(s) 223, 1207
FauI CCCGC 1 cut(s) 1111
FauNDI CATATG 2 cut(s) 1009, 1048
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 2 cut(s) 105, 1176
FokI GGATG 3 cut(s) 33, 950, 1021
FriOI GRGCYC 1 cut(s) 150
GlaI GCGC 1 cut(s) 574
HaeIII GGCC 4 cut(s) 559, 847, 1163, 1231
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 575
Hin1II CATG 2 cut(s) 227, 1211
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HincII GTYRAC 3 cut(s) 106, 285, 896
HindII GTYRAC 3 cut(s) 106, 285, 896
HinfI GANTC 2 cut(s) 514, 964
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 1 cut(s) 141
HphI GGTGA 4 cut(s) 35, 98, 610, 694
Hpy166II GTNNAC 7 cut(s) 106, 285, 631, 896, 1042, 1094, 1177
Hpy188I TCNGA 2 cut(s) 54, 963
Hpy188III TCNNGA 4 cut(s) 318, 398, 1028, 1169
Hpy8I GTNNAC 7 cut(s) 106, 285, 631, 896, 1042, 1094, 1177
Hpy99I CGWCG 2 cut(s) 110, 599
HpyAV CCTTC 2 cut(s) 858, 1221
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 4 cut(s) 169, 251, 594, 678
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 28, 659, 680, 860, 1019, 1237
HpyF3I CTNAG 2 cut(s) 51, 279
HpySE526I ACGT 4 cut(s) 169, 251, 594, 678
Hsp92II CATG 2 cut(s) 227, 1211
HspAI GCGC 1 cut(s) 573
Ksp22I TGATCA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 2 cut(s) 41, 688
Lsp1109I GCAGC 8 cut(s) 34, 239, 242, 587, 616, 646, 1177, 1252
LweI GCATC 5 cut(s) 22, 258, 322, 918, 994
MaeII ACGT 4 cut(s) 169, 251, 594, 678
MaeIII GTNAC 8 cut(s) 170, 379, 445, 616, 637, 700, 742, 946
MalI GATC 7 cut(s) 179, 345, 453, 469, 960, 1032, 1155
MboI GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
MboII GAAGA 7 cut(s) 74, 383, 386, 414, 764, 772, 869
MfeI CAATTG 1 cut(s) 1265
MflI RGATCY 2 cut(s) 958, 1030
MhlI GDGCHC 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 1163
MluCI AATT 7 cut(s) 112, 298, 491, 727, 776, 833, 1265
MluNI TGGCCA 1 cut(s) 1163
MmeI TCCRAC 1 cut(s) 340
Mox20I TGGCCA 1 cut(s) 1163
Mph1103I ATGCAT 2 cut(s) 15, 1009
MroXI GAANNNNTTC 3 cut(s) 66, 767, 864
MscI TGGCCA 1 cut(s) 1163
MseI TTAA 3 cut(s) 284, 296, 1184
MslI CAYNNNNRTG 1 cut(s) 1212
Msp20I TGGCCA 1 cut(s) 1163
MspA1I CMGCKG 1 cut(s) 1243
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 3 cut(s) 273, 844, 930
MunI CAATTG 1 cut(s) 1265
Mva1269I GAATGC 2 cut(s) 767, 879
MvaI CCWGG 3 cut(s) 273, 844, 930
MwoI GCNNNNNNNGC 7 cut(s) 19, 28, 659, 680, 860, 1019, 1237
NdeI CATATG 2 cut(s) 1009, 1048
NdeII GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
NlaIII CATG 2 cut(s) 227, 1211
NlaIV GGNNCC 2 cut(s) 37, 436
NmuCI GTSAC 2 cut(s) 616, 700
NsiI ATGCAT 2 cut(s) 15, 1009
NspV TTCGAA 2 cut(s) 70, 1106
PaqCI CACCTGC 1 cut(s) 1121
PceI AGGCCT 2 cut(s) 559, 847
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 2 cut(s) 767, 879
PdmI GAANNNNTTC 3 cut(s) 66, 767, 864
PfeI GAWTC 2 cut(s) 514, 964
PflMI CCANNNNNTGG 1 cut(s) 461
PfoI TCCNGGA 1 cut(s) 928
Ppu21I YACGTR 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 271, 842, 928
PspGI CCWGG 3 cut(s) 271, 842, 928
PspN4I GGNNCC 2 cut(s) 37, 436
PspPI GGNCC 3 cut(s) 338, 733, 1245
PstI CTGCAG 3 cut(s) 249, 655, 856
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 2 cut(s) 958, 1030
RsaI GTAC 6 cut(s) 98, 254, 460, 709, 1043, 1093
RsaNI GTAC 6 cut(s) 97, 253, 459, 708, 1042, 1092
RseI CAYNNNNRTG 1 cut(s) 1212
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 3 cut(s) 284, 296, 1184
Sau3AI GATC 7 cut(s) 177, 343, 451, 467, 958, 1030, 1153
Sau96I GGNCC 3 cut(s) 338, 733, 1245
ScaI AGTACT 2 cut(s) 98, 460
ScrFI CCNGG 3 cut(s) 273, 844, 930
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 5 cut(s) 22, 258, 322, 918, 994
SfcI CTRYAG 3 cut(s) 245, 651, 852
SfuI TTCGAA 2 cut(s) 70, 1106
SinI GGWCC 3 cut(s) 338, 733, 1245
SmiMI CAYNNNNRTG 1 cut(s) 1212
SmlI CTYRAG 1 cut(s) 1026
SmoI CTYRAG 1 cut(s) 1026
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 7 cut(s) 112, 298, 491, 727, 776, 833, 1265
SseBI AGGCCT 2 cut(s) 559, 847
SsiI CCGC 7 cut(s) 20, 26, 29, 1076, 1115, 1118, 1243
SstI GAGCTC 1 cut(s) 150
StuI AGGCCT 2 cut(s) 559, 847
StyD4I CCNGG 3 cut(s) 271, 842, 928
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 4 cut(s) 172, 254, 597, 681
TaqI TCGA 4 cut(s) 60, 70, 105, 1106
TasI AATT 7 cut(s) 112, 298, 491, 727, 776, 833, 1265
TatI WGTACW 3 cut(s) 96, 458, 707
TauI GCSGC 3 cut(s) 28, 31, 1118
TfiI GAWTC 2 cut(s) 514, 964
Tru1I TTAA 3 cut(s) 284, 296, 1184
Tru9I TTAA 3 cut(s) 284, 296, 1184
TscAI CASTG 1 cut(s) 974
TseFI GTSAC 2 cut(s) 616, 700
TseI GCWGC 8 cut(s) 22, 227, 230, 575, 604, 659, 1190, 1240
Tsp45I GTSAC 2 cut(s) 616, 700
TspDTI ATGAA 3 cut(s) 404, 548, 1196
TspGWI ACGGA 2 cut(s) 398, 1027
TspRI CASTG 1 cut(s) 974
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 3 cut(s) 338, 733, 1245
XapI RAATTY 1 cut(s) 491
XmiI GTMKAC 2 cut(s) 105, 1176
XmnI GAANNNNTTC 3 cut(s) 66, 767, 864
ZrmI AGTACT 2 cut(s) 98, 460
Zsp2I ATGCAT 2 cut(s) 15, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.