RLG00000022869

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
13787726 .. 13793698
5973 bp
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UTR
Exon/CDS
Intron
RLM00000022869

Sequence Viewer

Length: 1302 bp
ATGATGAACGCGCAGGCTCAGCCGGCAATGGCAGGTCCTCAGGGTTACCCTCATCACCAGCCTACTTCAGTCGAAGAGGTCAGAACCCTCTGGATTGGTGACCTACAGTACTGGGTCGATGAGAACTACCTCACTACTTGCTTCGCTCACACCGGCGAGGTGATTTCTATAAAGATCATACGTAACAAAATCACTGGGCAGCCGGAGGGTTATGGCTTTGTGGAGTTTGTCTCACACGCCGCAGCCGAAAGGATTCTGCATGCTTACAATGGCACTCAAATGCCTGGAACTGAGCAGACTTTTAGGTTGAATTGGGCTTCTTTCGGTATCGGCGAACGGCGTCCTGATGCTGGCCCTGAGCACTCCATTTTCGTAGGGGATTTGGCCCCTGATGTCACCGATTATGTGCTGCAAGAGACTTTTCGGAATACGTATCCATCCGTTAGAGGTGCCAAGGTTGTCACTGATCCAAACACTGGACGCTCGAAAGGTTATGGCTTTGTCAAGTTTGCTGATGAGGCGGAAAGGAACCGTGCTATGACCGAAATGAATGGTGTTTATTGCTCGACCAGGCCGATGAGGATCAGTGCAGCAACACCAAAGAAAACCACTGGTTTTCAGCAGCAGTATGCTGCAGCAAAAGCTGTATATCCTGTTCCGGCATACACTACATCAGCAGTTCCAGTAGTACCAACAGCAGATTATGATGCAAACAACACTACGATTTTTGTTGGAAACTTGGATCCTAATATTACTGAGGAGGAATTGAAGCAAACTTTTTTGCAATTTGGAGATATTGTCTATGTCAAGATTCCTGCAGGCAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATACAAAGGATGCAAGGAAAGATGATTGGCCAACAAGTGGTCCGCATTTCTTGGGGTAGGAGCCCAACAGCTAAACAGGATGTACCTGGTAGCTGGGGCCAGCAAGTAGATCCAAATCAATGGAGTGCATATTATGGTTATGGTCAAGGCTATGATCCCTATGCCTATGGAGCTTCTCAAGATCCATCATTGTATGGATACAGTGGATATGCCGGTTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATATGGCAGCTATGGCTGGTACTGTTCCATCTTTAGAACAGAGGGATGAACTGGATGATCCCTTGGCTACACCTGATGTTGACAAGTTGAATGCTGCTTACCTCTCTGTACATGGAAGGGCCATTTTGGGCCACCCCTTGTGGCTAAGAACATCAGCGTTTCCGCAGCAAGCATAG

Protein Analysis

434

Amino Acids

47.63

Weight (kDa)

5.35

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 30 - 98 1.1e-13 RNA recognition motif
RRM_1 PF00076 123 - 188 2.8e-16 RNA recognition motif
RRM_1 PF00076 242 - 305 7.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 2 cut(s) 476, 910
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 240, 521, 916, 1289
AclWI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
AcoI YGGCCR 2 cut(s) 901, 1093
AcuI CTGAAG 2 cut(s) 51, 885
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 6 cut(s) 110, 690, 840, 957, 1147, 1236
AfiI CCNNNNNNNGG 3 cut(s) 350, 476, 910
AgsI TTSAA 5 cut(s) 310, 769, 1115, 1124, 1216
AjnI CCWGG 3 cut(s) 283, 569, 958
AluBI AGCT 6 cut(s) 644, 872, 944, 966, 1046, 1136
AluI AGCT 6 cut(s) 644, 872, 944, 966, 1046, 1136
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 235, 410
AlwI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
AoxI GGCC 8 cut(s) 352, 384, 572, 901, 970, 1093, 1245, 1255
Asp700I GAANNNNTTC 2 cut(s) 252, 1119
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
AsuHPI GGTGA 4 cut(s) 47, 110, 172, 388
AvaII GGWCC 2 cut(s) 35, 913
AxyI CCTNAGG 1 cut(s) 39
BalI TGGCCA 2 cut(s) 903, 1095
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BccI CCATC 3 cut(s) 445, 1066, 1162
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 3 cut(s) 285, 571, 960
BciVI GTATCC 2 cut(s) 444, 1064
BcoDI GTCTC 2 cut(s) 235, 410
BfmI CTRYAG 3 cut(s) 104, 633, 816
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 2 cut(s) 444, 1064
BlpI GCTNAGC 1 cut(s) 18
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 285, 571, 960
Bme18I GGWCC 2 cut(s) 35, 913
BmgT120I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
BmiI GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
BmrFI CCNGG 3 cut(s) 285, 571, 960
BmrI ACTGGG 2 cut(s) 121, 204
BmsI GCATC 4 cut(s) 337, 697, 866, 873
BmuI ACTGGG 2 cut(s) 121, 204
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 1035
BsaAI YACGTR 2 cut(s) 182, 432
BsaBI GATNNNNATC 2 cut(s) 581, 987
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 453, 1188
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 476, 910
Bse118I RCCGGY 3 cut(s) 22, 152, 1085
Bse1I ACTGG 6 cut(s) 116, 199, 481, 616, 683, 1182
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 2 cut(s) 581, 987
BseBI CCWGG 3 cut(s) 285, 571, 960
BseDI CCNNGG 2 cut(s) 453, 1188
BseGI GGATG 5 cut(s) 437, 888, 958, 1177, 1186
BseJI GATNNNNATC 2 cut(s) 581, 987
BseLI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 5 cut(s) 32, 53, 282, 348, 747
BseNI ACTGG 6 cut(s) 116, 199, 481, 616, 683, 1182
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BseYI CCCAGC 1 cut(s) 966
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 5 cut(s) 23, 153, 203, 659, 1086
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BsmAI GTCTC 2 cut(s) 235, 410
BsmFI GGGAC 1 cut(s) 862
BsmI GAATGC 1 cut(s) 1222
BsnI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
Bsp1286I GDGCHC 2 cut(s) 363, 938
Bsp1407I TGTACA 2 cut(s) 838, 1234
Bsp143I GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 4 cut(s) 240, 521, 916, 1289
BspANI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BspCNI CTCAG 5 cut(s) 31, 52, 283, 349, 748
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
BspMAI CTGCAG 2 cut(s) 637, 820
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 8 cut(s) 461, 590, 737, 750, 977, 1022, 1049, 1178
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 22, 152, 1085
BsrGI TGTACA 2 cut(s) 838, 1234
BsrI ACTGG 6 cut(s) 116, 199, 481, 616, 683, 1182
BssAI RCCGGY 3 cut(s) 22, 152, 1085
BssECI CCNNGG 2 cut(s) 453, 1188
BssMI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 453, 1188
Bst2UI CCWGG 3 cut(s) 285, 571, 960
Bst4CI ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 2 cut(s) 838, 1234
BstBAI YACGTR 2 cut(s) 182, 432
BstC8I GCNNGC 7 cut(s) 15, 24, 261, 352, 820, 974, 1296
BstDEI CTNAG 6 cut(s) 18, 39, 291, 357, 756, 1271
BstEII GGTNACC 2 cut(s) 44, 98
BstF5I GGATG 5 cut(s) 437, 888, 958, 1177, 1186
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 8 cut(s) 177, 469, 585, 745, 985, 1030, 1057, 1186
BstMAI GTCTC 2 cut(s) 235, 410
BstMBI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
BstMWI GCNNNNNNNGC 7 cut(s) 19, 23, 518, 641, 869, 1043, 1139
BstNI CCWGG 3 cut(s) 285, 571, 960
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 2 cut(s) 44, 98
BstSCI CCNGG 3 cut(s) 283, 569, 958
BstSFI CTRYAG 3 cut(s) 104, 633, 816
BstSNI TACGTA 2 cut(s) 182, 432
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
BstX2I RGATCY 3 cut(s) 742, 982, 1054
BstXI CCANNNNNNTGG 1 cut(s) 993
BstYI RGATCY 3 cut(s) 742, 982, 1054
Bsu36I CCTNAGG 1 cut(s) 39
BsuI GTATCC 2 cut(s) 444, 1064
BsuRI GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
BtsCI GGATG 5 cut(s) 437, 888, 958, 1177, 1186
BtsIMutI CAGTG 6 cut(s) 192, 462, 474, 592, 609, 1081
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 7 cut(s) 15, 24, 261, 352, 820, 974, 1296
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 3 cut(s) 22, 152, 1085
Cfr13I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
CseI GACGC 2 cut(s) 329, 489
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 2 cut(s) 260, 1238
CviQI GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
DdeI CTNAG 6 cut(s) 18, 39, 291, 357, 756, 1271
DpnI GATC 8 cut(s) 176, 468, 584, 744, 984, 1029, 1056, 1185
DpnII GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
EaeI YGGCCR 2 cut(s) 901, 1093
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 536
Eco105I TACGTA 2 cut(s) 182, 432
Eco130I CCWWGG 2 cut(s) 453, 1188
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 35, 913
Eco57I CTGAAG 2 cut(s) 51, 885
Eco81I CCTNAGG 1 cut(s) 39
Eco91I GGTNACC 2 cut(s) 44, 98
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 2 cut(s) 44, 98
EcoRII CCWGG 3 cut(s) 283, 569, 958
EcoT14I CCWWGG 2 cut(s) 453, 1188
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 453, 1188
FaeI CATG 2 cut(s) 263, 1241
FaqI GGGAC 1 cut(s) 862
FatI CATG 2 cut(s) 259, 1237
FokI GGATG 5 cut(s) 424, 895, 965, 1184, 1193
FriOI GRGCYC 1 cut(s) 938
GlaI GCGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 970
HaeIII GGCC 8 cut(s) 354, 386, 574, 903, 972, 1095, 1247, 1257
HapII CCGG 5 cut(s) 23, 153, 203, 659, 1086
HgaI GACGC 2 cut(s) 329, 489
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 2 cut(s) 263, 1241
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HinfI GANTC 2 cut(s) 253, 811
HpaII CCGG 5 cut(s) 23, 153, 203, 659, 1086
HphI GGTGA 4 cut(s) 47, 110, 172, 388
Hpy166II GTNNAC 1 cut(s) 1207
Hpy188I TCNGA 2 cut(s) 83, 426
Hpy188III TCNNGA 5 cut(s) 91, 344, 808, 1052, 1124
Hpy8I GTNNAC 1 cut(s) 1207
HpyAV CCTTC 2 cut(s) 1109, 1236
HpyCH4III ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
HpyCH4IV ACGT 2 cut(s) 181, 431
HpyCH4V TGCA 9 cut(s) 259, 412, 590, 635, 710, 784, 818, 886, 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 23, 518, 641, 869, 1043, 1139
HpyF3I CTNAG 6 cut(s) 18, 39, 291, 357, 756, 1271
HpySE526I ACGT 2 cut(s) 181, 431
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 2 cut(s) 263, 1241
HspAI GCGC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Kzo9I GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
LmnI GCTCC 2 cut(s) 933, 1043
Lsp1109I GCAGC 9 cut(s) 211, 254, 396, 602, 619, 634, 647, 1145, 1207
LweI GCATC 4 cut(s) 337, 697, 866, 873
MabI ACCWGGT 1 cut(s) 958
MaeII ACGT 2 cut(s) 181, 431
MaeIII GTNAC 5 cut(s) 44, 98, 182, 394, 460
MalI GATC 8 cut(s) 176, 468, 584, 744, 984, 1029, 1056, 1185
MboI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
MboII GAAGA 2 cut(s) 86, 878
MflI RGATCY 3 cut(s) 742, 982, 1054
MhlI GDGCHC 2 cut(s) 363, 938
MlsI TGGCCA 2 cut(s) 903, 1095
MluCI AATT 3 cut(s) 310, 764, 785
MluNI TGGCCA 2 cut(s) 903, 1095
MmeI TCCRAC 1 cut(s) 712
Mox20I TGGCCA 2 cut(s) 903, 1095
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 2 cut(s) 252, 1119
MscI TGGCCA 2 cut(s) 903, 1095
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 2 cut(s) 903, 1095
MspI CCGG 5 cut(s) 23, 153, 203, 659, 1086
MspR9I CCNGG 3 cut(s) 285, 571, 960
Mva1269I GAATGC 1 cut(s) 1222
MvaI CCWGG 3 cut(s) 285, 571, 960
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 7 cut(s) 19, 23, 518, 641, 869, 1043, 1139
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 263, 1241
NlaIV GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
NmuCI GTSAC 3 cut(s) 98, 394, 460
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 330, 572
PctI GAATGC 1 cut(s) 1222
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 252, 1119
PfeI GAWTC 2 cut(s) 253, 811
PflMI CCANNNNNTGG 2 cut(s) 476, 910
Ppu21I YACGTR 2 cut(s) 182, 432
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 283, 569, 958
PspEI GGTNACC 2 cut(s) 44, 98
PspFI CCCAGC 1 cut(s) 966
PspGI CCWGG 3 cut(s) 283, 569, 958
PspN4I GGNNCC 6 cut(s) 387, 451, 530, 744, 935, 971
PspPI GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
PspPPI RGGWCCY 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 2 cut(s) 637, 820
PsuI RGATCY 3 cut(s) 742, 982, 1054
RsaI GTAC 6 cut(s) 110, 690, 840, 957, 1147, 1236
RsaNI GTAC 6 cut(s) 109, 689, 839, 956, 1146, 1235
RseI CAYNNNNRTG 1 cut(s) 278
Sau3AI GATC 8 cut(s) 174, 466, 582, 742, 982, 1027, 1054, 1183
Sau96I GGNCC 7 cut(s) 35, 353, 385, 913, 970, 1245, 1255
SbfI CCTGCAGG 1 cut(s) 820
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 3 cut(s) 285, 571, 960
SdaI CCTGCAGG 1 cut(s) 820
SduI GDGCHC 2 cut(s) 363, 938
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 4 cut(s) 337, 697, 866, 873
SfcI CTRYAG 3 cut(s) 104, 633, 816
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 2 cut(s) 35, 913
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
SnaBI TACGTA 2 cut(s) 182, 432
SphI GCATGC 1 cut(s) 263
Sse8387I CCTGCAGG 1 cut(s) 820
Sse9I AATT 3 cut(s) 310, 764, 785
SsiI CCGC 4 cut(s) 240, 521, 916, 1289
SspI AATATT 1 cut(s) 751
StyD4I CCNGG 3 cut(s) 283, 569, 958
StyI CCWWGG 2 cut(s) 453, 1188
TaaI ACNGT 5 cut(s) 108, 533, 843, 1076, 1150
TaiI ACGT 2 cut(s) 184, 434
TaqI TCGA 4 cut(s) 72, 117, 485, 566
TaqII GACCGA 1 cut(s) 557
TasI AATT 3 cut(s) 310, 764, 785
TatI WGTACW 3 cut(s) 108, 838, 1234
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 2 cut(s) 253, 811
TscAI CASTG 6 cut(s) 199, 469, 481, 592, 616, 1081
TseFI GTSAC 3 cut(s) 98, 394, 460
Tsp45I GTSAC 3 cut(s) 98, 394, 460
TspDTI ATGAA 3 cut(s) 20, 563, 1188
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 6 cut(s) 199, 469, 481, 592, 616, 1081
Van91I CCANNNNNTGG 2 cut(s) 476, 910
VpaK11BI GGWCC 2 cut(s) 35, 913
XceI RCATGY 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 252, 1119
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.