MD03G1176800.v1.1

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
24304857 .. 24309631
4775 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1176800.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGATGAGCGCTCAGCCTCAGCCGCCGAGTAGTATGATGGCGGCGGCTCCTACCACGTCTTCTCAGGGGTACCAGCATCATCATCAGCCAACTTCAGTGGAGGAGGTCAGAACCCTCTGGATTGGGGATTTACAGTATTGGGTGGACGAAAACTACCTCAATACCTGCTTTGCTCACACCGGCGAGGTGATTTCAATAAAGATAATACGTAATAAAATCACTGGCCAGCCGGAGGGTTATGGGTTTGTGGAATTTGTTTCTCATGCTGCAGCGGAAAGGGTTCTGCATGCTTACAATGGGACACAAATGCCTGGAACTGAACAAACTTTTAGGCTAAACTGGGCTTCCTTTGGTATTGGGGAAAGACGTCCTGATGCTGGGCCTGAGCACTCTATTTTTGTAGGCGATTTAGCCCCTGATGTTACAGATTATATGCTGCAAGAAACCTTTCGAACTAATTATCCTGAAAGGAACCGAGCTATGTCAGAAATGAATGGTCAGTATTGCTCAAGTAGACCGATGCGTATCAGTGCAGCAACACCGAAGAAAACCACTGGTTTTCAGCAACAATATGCTGCCGCAAAAGCGGTATATCCTGTCCCAGCATACACTACACCAGCAGTTCCCGTGCTTCCTACAGCAGATTATGACGTAAACAACACCACTATTTTTGTTGGTAACTTGGATCCTAATGTGGCGGAGGATGAACTCAAGCAAACTTTTATGCAGTTTGGAGATATTTTCTATGTCAAGATTCCTGTCGGCAAAGGATGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATCCAAAGGATGCAGGGAAAGATGATCGGTCAACAAGTAGTCCGTATTTCTTGGGGCAGGAGCCCAACAGCTAAACAGGACGTACCTGGTACCTGGGGTCAGCAAGCAGATCCAAACCAATGGGCTGCATATTATGGTTATGGACAAGGCTACGATGCCTATGCTTACGGGGCGGCGACTCCTGATCCATCATTATATGCATATGGTGCATATGCTGGCTATGGCCAATATCCTCAACAGGTTGAAGGTCAAGATGCTGCAACTGCGGGAGGTGCTATCCCATCTGTTGAACAGAGAGAAGAGTTGGATGATCCCTTGGCTACACCGGACGTTGATAAGTTAAATGCAGCTTACCTCGCCCGCCACGAAAGGGCCATCTTATGCCGGCCTTTGTGGCTGAGAACATCATCATTTACGCAGCAAGCTTAG

Protein Analysis

415

Amino Acids

45.75

Weight (kDa)

5.24

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 39 - 107 4.8e-14 RNA recognition motif
RRM_1 PF00076 223 - 286 2.8e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 2 cut(s) 69, 905
AccB1I GGYRCC 2 cut(s) 69, 905
AccI GTMKAC 1 cut(s) 514
AclWI GGATC 5 cut(s) 680, 693, 920, 995, 1121
AcoI YGGCCR 2 cut(s) 223, 1039
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 78, 828
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 4 cut(s) 71, 783, 900, 907
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 232, 377, 1186
AgsI TTSAA 3 cut(s) 195, 1061, 1106
AjiI CACGTC 1 cut(s) 57
AjnI CCWGG 3 cut(s) 310, 901, 908
AloI GAACNNNNNNTCC 2 cut(s) 445, 477
AluBI AGCT 5 cut(s) 479, 815, 887, 1166, 1241
AluI AGCT 5 cut(s) 479, 815, 887, 1166, 1241
Alw21I GWGCWC 1 cut(s) 390
AlwI GGATC 5 cut(s) 680, 693, 920, 995, 1121
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 5 cut(s) 223, 380, 1039, 1188, 1202
ApeKI GCWGC 9 cut(s) 266, 269, 436, 533, 575, 941, 1073, 1163, 1234
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 2 cut(s) 279, 447
Asp718I GGTACC 2 cut(s) 69, 905
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 380, 1188
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 451
BalI TGGCCA 2 cut(s) 225, 1041
BamHI GGATCC 1 cut(s) 685
BanI GGYRCC 2 cut(s) 69, 905
BanII GRGCYC 1 cut(s) 881
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 8 cut(s) 253, 281, 423, 545, 562, 928, 1060, 1175
BccI CCATC 4 cut(s) 31, 1012, 1105, 1199
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 3 cut(s) 312, 903, 910
BfmI CTRYAG 2 cut(s) 267, 636
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 1210
BlpI GCTNAGC 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 312, 903, 910
BmgBI CACGTC 1 cut(s) 57
BmgT120I GGNCC 2 cut(s) 380, 1188
BmiI GGNNCC 6 cut(s) 48, 71, 473, 687, 878, 907
BmrFI CCNGG 3 cut(s) 312, 903, 910
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 7 cut(s) 85, 364, 510, 809, 816, 961, 1060
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 51
Bpu10I CCTNAGC 2 cut(s) 18, 384
Bpu1102I GCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 493, 695
BsaAI YACGTR 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 909, 1131
BsaWI WCCGGW 1 cut(s) 1141
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 377, 1186
Bse118I RCCGGY 2 cut(s) 179, 1200
Bse1I ACTGG 3 cut(s) 226, 344, 559
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 3 cut(s) 312, 903, 910
BseDI CCNNGG 2 cut(s) 909, 1131
BseGI GGATG 4 cut(s) 709, 776, 831, 1129
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 3 cut(s) 232, 377, 1186
BseMII CTCAG 5 cut(s) 26, 32, 77, 375, 1205
BseNI ACTGG 3 cut(s) 226, 344, 559
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 8 cut(s) 253, 281, 423, 545, 562, 928, 1060, 1175
BseYI CCCAGC 2 cut(s) 377, 601
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 5 cut(s) 225, 382, 1041, 1190, 1204
BshNI GGYRCC 2 cut(s) 69, 905
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 4 cut(s) 180, 230, 1142, 1201
BslFI GGGAC 3 cut(s) 313, 584, 805
BslI CCNNNNNNNGG 3 cut(s) 232, 377, 1186
BsmFI GGGAC 3 cut(s) 313, 584, 805
BsnI GGCC 5 cut(s) 225, 382, 1041, 1190, 1204
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 390, 881
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 5 cut(s) 685, 840, 925, 1000, 1126
Bsp1720I GCTNAGC 1 cut(s) 12
BspANI GGCC 5 cut(s) 225, 382, 1041, 1190, 1204
BspCNI CTCAG 5 cut(s) 25, 31, 76, 376, 1206
BspLI GGNNCC 6 cut(s) 48, 71, 473, 687, 878, 907
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 5 cut(s) 680, 693, 920, 995, 1121
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 2 cut(s) 69, 905
BsrFI RCCGGY 2 cut(s) 179, 1200
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 3 cut(s) 226, 344, 559
BssAI RCCGGY 2 cut(s) 179, 1200
BssECI CCNNGG 2 cut(s) 909, 1131
BssMI GATC 5 cut(s) 685, 840, 925, 1000, 1126
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 1131
Bst2UI CCWGG 3 cut(s) 312, 903, 910
Bst4CI ACNGT 2 cut(s) 135, 786
Bst6I CTCTTC 1 cut(s) 1110
BstACI GRCGYC 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstAUI TGTACA 1 cut(s) 781
BstBAI YACGTR 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 7 cut(s) 227, 288, 921, 1033, 1177, 1202, 1239
BstDEI CTNAG 6 cut(s) 12, 18, 63, 384, 1214, 1242
BstF5I GGATG 4 cut(s) 709, 776, 831, 1129
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 5 cut(s) 688, 843, 928, 1003, 1129
BstMBI GATC 5 cut(s) 685, 840, 925, 1000, 1126
BstMWI GCNNNNNNNGC 9 cut(s) 22, 584, 812, 986, 1022, 1079, 1088, 1172, 1210
BstNI CCWGG 3 cut(s) 312, 903, 910
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 3 cut(s) 310, 901, 908
BstSFI CTRYAG 2 cut(s) 267, 636
BstSNI TACGTA 1 cut(s) 209
BstV1I GCAGC 8 cut(s) 253, 281, 423, 545, 562, 928, 1060, 1175
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 685, 925
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 2 cut(s) 685, 925
BsuRI GGCC 5 cut(s) 225, 382, 1041, 1190, 1204
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 4 cut(s) 709, 776, 831, 1129
BtsIMutI CAGTG 4 cut(s) 102, 219, 535, 552
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 7 cut(s) 227, 288, 921, 1033, 1177, 1202, 1239
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 179, 1200
Cfr13I GGNCC 2 cut(s) 380, 1188
CsiI ACCWGGT 1 cut(s) 901
Csp6I GTAC 4 cut(s) 70, 782, 899, 906
CspCI CAANNNNNGTGG 6 cut(s) 78, 113, 652, 687, 754, 789
CviAII CATG 2 cut(s) 263, 287
CviQI GTAC 4 cut(s) 70, 782, 899, 906
DdeI CTNAG 6 cut(s) 12, 18, 63, 384, 1214, 1242
DpnI GATC 5 cut(s) 687, 842, 927, 1002, 1128
DpnII GATC 5 cut(s) 685, 840, 925, 1000, 1126
EaeI YGGCCR 2 cut(s) 223, 1039
Eam1104I CTCTTC 1 cut(s) 1110
EarI CTCTTC 1 cut(s) 1110
EciI GGCGGA 1 cut(s) 713
Eco105I TACGTA 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 1131
Eco24I GRGCYC 1 cut(s) 881
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 78, 828
EcoRII CCWGG 3 cut(s) 310, 901, 908
EcoT14I CCWWGG 1 cut(s) 1131
EcoT22I ATGCAT 1 cut(s) 1018
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 1 cut(s) 1131
FaeI CATG 2 cut(s) 266, 290
FaqI GGGAC 3 cut(s) 313, 584, 805
FatI CATG 2 cut(s) 262, 286
FauI CCCGC 2 cut(s) 1075, 1184
FauNDI CATATG 2 cut(s) 1018, 1027
FblI GTMKAC 1 cut(s) 514
FokI GGATG 4 cut(s) 716, 783, 838, 1136
FriOI GRGCYC 1 cut(s) 881
GlaI GCGC 1 cut(s) 10
GsaI CCCAGC 2 cut(s) 381, 605
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 225, 382, 1041, 1190, 1204
HapII CCGG 4 cut(s) 180, 230, 1142, 1201
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 2 cut(s) 266, 290
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 848
HindII GTYRAC 1 cut(s) 848
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 2 cut(s) 754, 994
HpaII CCGG 4 cut(s) 180, 230, 1142, 1201
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 4 cut(s) 145, 515, 655, 848
Hpy188I TCNGA 2 cut(s) 110, 487
Hpy188III TCNNGA 6 cut(s) 118, 371, 464, 751, 998, 1067
Hpy8I GTNNAC 4 cut(s) 145, 515, 655, 848
HpyAV CCTTC 1 cut(s) 1055
HpyCH4III ACNGT 2 cut(s) 135, 786
HpyCH4IV ACGT 6 cut(s) 56, 208, 367, 651, 897, 1146
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 584, 812, 986, 1022, 1079, 1088, 1172, 1210
HpyF3I CTNAG 6 cut(s) 12, 18, 63, 384, 1214, 1242
HpySE526I ACGT 6 cut(s) 56, 208, 367, 651, 897, 1146
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 2 cut(s) 266, 290
HspAI GCGC 1 cut(s) 9
KpnI GGTACC 2 cut(s) 73, 909
KroI GCCGGC 1 cut(s) 1200
KroNI GCCGGC 1 cut(s) 1202
Kzo9I GATC 5 cut(s) 685, 840, 925, 1000, 1126
LmnI GCTCC 2 cut(s) 52, 876
Lsp1109I GCAGC 8 cut(s) 253, 281, 423, 545, 562, 928, 1060, 1175
LweI GCATC 7 cut(s) 85, 364, 510, 809, 816, 961, 1060
MabI ACCWGGT 1 cut(s) 901
MaeII ACGT 6 cut(s) 56, 208, 367, 651, 897, 1146
MaeIII GTNAC 2 cut(s) 421, 677
MalI GATC 5 cut(s) 687, 842, 927, 1002, 1128
MboI GATC 5 cut(s) 685, 840, 925, 1000, 1126
MboII GAAGA 4 cut(s) 51, 556, 821, 1127
MflI RGATCY 2 cut(s) 685, 925
MhlI GDGCHC 2 cut(s) 390, 881
MlsI TGGCCA 2 cut(s) 225, 1041
MluCI AATT 2 cut(s) 251, 457
MluNI TGGCCA 2 cut(s) 225, 1041
MlyI GAGTC 1 cut(s) 988
MmeI TCCRAC 1 cut(s) 1101
Mox20I TGGCCA 2 cut(s) 225, 1041
Mph1103I ATGCAT 1 cut(s) 1018
MroNI GCCGGC 1 cut(s) 1200
MroXI GAANNNNTTC 2 cut(s) 279, 447
MscI TGGCCA 2 cut(s) 225, 1041
MseI TTAA 1 cut(s) 1157
Msp20I TGGCCA 2 cut(s) 225, 1041
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 4 cut(s) 180, 230, 1142, 1201
MspR9I CCNGG 3 cut(s) 312, 903, 910
MvaI CCWGG 3 cut(s) 312, 903, 910
MwoI GCNNNNNNNGC 9 cut(s) 22, 584, 812, 986, 1022, 1079, 1088, 1172, 1210
NaeI GCCGGC 1 cut(s) 1202
NdeI CATATG 2 cut(s) 1018, 1027
NdeII GATC 5 cut(s) 685, 840, 925, 1000, 1126
NgoMIV GCCGGC 1 cut(s) 1200
NlaIII CATG 2 cut(s) 266, 290
NlaIV GGNNCC 6 cut(s) 48, 71, 473, 687, 878, 907
NmeAIII GCCGAG 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 1018
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 451
PaeI GCATGC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 1179
PdiI GCCGGC 1 cut(s) 1202
PdmI GAANNNNTTC 2 cut(s) 279, 447
PfeI GAWTC 1 cut(s) 754
PleI GAGTC 1 cut(s) 988
PpsI GAGTC 1 cut(s) 988
Ppu21I YACGTR 1 cut(s) 209
Psp6I CCWGG 3 cut(s) 310, 901, 908
PspFI CCCAGC 2 cut(s) 377, 601
PspGI CCWGG 3 cut(s) 310, 901, 908
PspN4I GGNNCC 6 cut(s) 48, 71, 473, 687, 878, 907
PspPI GGNCC 2 cut(s) 380, 1188
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 2 cut(s) 685, 925
RsaI GTAC 4 cut(s) 71, 783, 900, 907
RsaNI GTAC 4 cut(s) 70, 782, 899, 906
SaqAI TTAA 1 cut(s) 1157
Sau3AI GATC 5 cut(s) 685, 840, 925, 1000, 1126
Sau96I GGNCC 2 cut(s) 380, 1188
SchI GAGTC 1 cut(s) 988
ScrFI CCNGG 3 cut(s) 312, 903, 910
SduI GDGCHC 2 cut(s) 390, 881
SexAI ACCWGGT 1 cut(s) 901
SfaNI GCATC 7 cut(s) 85, 364, 510, 809, 816, 961, 1060
SfcI CTRYAG 2 cut(s) 267, 636
SfuI TTCGAA 1 cut(s) 451
SgrAI CRCCGGYG 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 508, 710
SmoI CTYRAG 2 cut(s) 508, 710
SnaBI TACGTA 1 cut(s) 209
SphI GCATGC 1 cut(s) 290
Sse9I AATT 2 cut(s) 251, 457
StyD4I CCNGG 3 cut(s) 310, 901, 908
StyI CCWWGG 1 cut(s) 1131
TaaI ACNGT 2 cut(s) 135, 786
TaiI ACGT 6 cut(s) 59, 211, 370, 654, 900, 1149
TaqI TCGA 1 cut(s) 451
TaqII GACCGA 2 cut(s) 532, 833
TasI AATT 2 cut(s) 251, 457
TatI WGTACW 1 cut(s) 781
TauI GCSGC 5 cut(s) 25, 44, 47, 581, 992
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 1 cut(s) 1157
Tru9I TTAA 1 cut(s) 1157
TscAI CASTG 4 cut(s) 102, 226, 535, 559
TseI GCWGC 9 cut(s) 266, 269, 436, 533, 575, 941, 1073, 1163, 1234
TspDTI ATGAA 2 cut(s) 506, 720
TspGWI ACGGA 1 cut(s) 848
TspRI CASTG 4 cut(s) 102, 226, 535, 559
XapI RAATTY 1 cut(s) 251
XceI RCATGY 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 2 cut(s) 279, 447
ZraI GACGTC 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.