pycom11g17020

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
18991482 .. 18996650
5169 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17020.5

Sequence Viewer

Length: 1329 bp
ATGATGAGCGCTCAGCTTCAGCCGCTGAGTAGTATGATGGCGGCGGCTCCTACGATGGCGTCTCAGGGGTACCAGCATCATAATCAGCCAACTTCAGTGGAGGAGGTCAGAACCCTCTGGATTGGCGATTTACAGTATTGGGTCGACGAAAACTACCTCAATACCTGCTTTGCTCACACCGGAGAGGTGATTTCAATAAAGATAATACGTAATAAAATTACTGGCCAGCCGGAGGGTTATGGGTTTGTAGAATTTGTTTCTCATGCTGCAGCGGAAAGGGTTCTTCATGCTTACAATGGGACACAAATGCCTGGAACTGAACAAACTTTTAGGTTAAACTGGGCTTCCTTTGGTATTGGGGAAAGACGTCCTGATGCTGCGCCTGAGCACTCTATTTTCGTAGGAGATTTAGCCCCTGATGTTACAGATTATACCTTGCAAGAAACCTTTCGAACTAATTATCCATCAGTTAGAGGTGCCAAGGTTGTGACTGATCCTAACACTGGACGCTCAAAGGGATATGGGTTTGTCAAGTTTGCTGATGAGACTGAAAGGAACCGAGCTATGTCAGAAATGAATGGTCAGTATTGCTCAAGTAGACCAATGCGTATCAGTGCAGCAACACCAAAGAAAACCACCGGTTTTCAGCAACAATATGCTACTGCAAAAGCAGTATATCCTGTTCCAGCATACACTACACCAGCAGTTCCAGTGCTTCCAACAGCAGATTATGACGTAAACAACACTACAATTTTTGTTGGTAACTTGGATCCTAATGTGATGGAGGATGAACTCAAGCAAACTTTTATGCAGTTTGGAGAGATTTTCTATGTCAAGATTCCTGTGGGCAAAGGATGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATCCAAAGGATGCAGGGAAAGATGATTGGTCAACAAGTAGTCCGTATTTCTTGGGGCAGGAGCCCTACAGCGAAACAGGATGTACCTGGTAGCTGGGGTCAGCAAGTAGATCCAAACCAATGGGCTGCATATTATGGTTATGGACAAGGCTACGATGCCTATGCTTACGGGGCTACTCCTGATCCATCATTATATGCATACGGTGCATATGCTGGCTATGGTCAATATCCTCAACAGGTTGAAGGAGTTCAAGATGTTGCAACTGTGGGAGGTACTATCCTGTCTGTTGAACAGAGAGAAGAGTTGGATGATCCCTTGGCGACACCAGATGTTGATAAGTTAAATGCAGCTTACCTCGCCCGCCACGAAAGGGCCATTTTGTGCCGGCCCTTGTGGTTGAGAACATCGTCGTTTACGCAGCAAGCTTAG

Protein Analysis

443

Amino Acids

48.97

Weight (kDa)

5.38

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 2 cut(s) 69, 476
AccI GTMKAC 2 cut(s) 144, 598
AciI CCGC 5 cut(s) 23, 41, 44, 272, 1261
AclWI GGATC 6 cut(s) 488, 764, 777, 1004, 1076, 1205
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 78, 912
AcyI GRCGYC 2 cut(s) 59, 367
AfaI GTAC 4 cut(s) 71, 867, 984, 1174
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 232, 503, 1270
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 4 cut(s) 195, 1142, 1151, 1190
AjnI CCWGG 2 cut(s) 310, 985
AloI GAACNNNNNNTCC 2 cut(s) 445, 477
AluBI AGCT 6 cut(s) 16, 563, 899, 993, 1250, 1325
AluI AGCT 6 cut(s) 16, 563, 899, 993, 1250, 1325
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 2 cut(s) 66, 539
AlwI GGATC 6 cut(s) 488, 764, 777, 1004, 1076, 1205
AlwNI CAGNNNCTG 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 3 cut(s) 223, 1272, 1286
ApeKI GCWGC 7 cut(s) 266, 269, 377, 617, 1025, 1247, 1318
ApoI RAATTY 1 cut(s) 251
AsiGI ACCGGT 1 cut(s) 638
Asp700I GAANNNNTTC 3 cut(s) 279, 447, 1146
Asp718I GGTACC 1 cut(s) 69
AspLEI GCGC 2 cut(s) 11, 382
AspS9I GGNCC 2 cut(s) 1272, 1287
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 451
BalI TGGCCA 1 cut(s) 225
BamHI GGATCC 1 cut(s) 769
BanI GGYRCC 2 cut(s) 69, 476
BanII GRGCYC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 6 cut(s) 253, 281, 364, 629, 1012, 1259
BccI CCATC 5 cut(s) 31, 49, 472, 775, 1093
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 2 cut(s) 312, 987
BcoDI GTCTC 2 cut(s) 66, 539
BfmI CTRYAG 2 cut(s) 267, 966
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 12
Bme1390I CCNGG 2 cut(s) 312, 987
BmgT120I GGNCC 2 cut(s) 1272, 1287
BmiI GGNNCC 6 cut(s) 48, 71, 478, 557, 771, 962
BmrFI CCNGG 2 cut(s) 312, 987
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 5 cut(s) 85, 364, 893, 900, 1045
BmuI ACTGGG 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 384
Bpu1102I GCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 451
BpuEI CTTGAG 2 cut(s) 577, 779
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 2 cut(s) 59, 367
BsaJI CCNNGG 2 cut(s) 480, 1215
BsaWI WCCGGW 2 cut(s) 179, 638
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 503, 1270
Bse118I RCCGGY 2 cut(s) 638, 1284
Bse1I ACTGG 4 cut(s) 226, 344, 508, 710
BseBI CCWGG 2 cut(s) 312, 987
BseDI CCNNGG 2 cut(s) 480, 1215
BseGI GGATG 5 cut(s) 793, 860, 915, 985, 1213
BseLI CCNNNNNNNGG 3 cut(s) 232, 503, 1270
BseMII CTCAG 4 cut(s) 17, 26, 77, 375
BseNI ACTGG 4 cut(s) 226, 344, 508, 710
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 6 cut(s) 253, 281, 364, 629, 1012, 1259
BseYI CCCAGC 1 cut(s) 993
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 3 cut(s) 225, 1274, 1288
BshNI GGYRCC 2 cut(s) 69, 476
BshTI ACCGGT 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 4 cut(s) 180, 230, 639, 1285
BslFI GGGAC 2 cut(s) 313, 889
BslI CCNNNNNNNGG 3 cut(s) 232, 503, 1270
BsmAI GTCTC 2 cut(s) 66, 539
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 313, 889
BsnI GGCC 3 cut(s) 225, 1274, 1288
Bsp119I TTCGAA 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 390, 965
Bsp1407I TGTACA 1 cut(s) 865
Bsp143I GATC 5 cut(s) 493, 769, 1009, 1081, 1210
Bsp1720I GCTNAGC 1 cut(s) 12
BspACI CCGC 5 cut(s) 23, 41, 44, 272, 1261
BspANI GGCC 3 cut(s) 225, 1274, 1288
BspCNI CTCAG 4 cut(s) 18, 25, 76, 376
BspLI GGNNCC 6 cut(s) 48, 71, 478, 557, 771, 962
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 6 cut(s) 488, 764, 777, 1004, 1076, 1205
BspT104I TTCGAA 1 cut(s) 451
BspT107I GGYRCC 2 cut(s) 69, 476
BsrFI RCCGGY 2 cut(s) 638, 1284
BsrGI TGTACA 1 cut(s) 865
BsrI ACTGG 4 cut(s) 226, 344, 508, 710
BssAI RCCGGY 2 cut(s) 638, 1284
BssECI CCNNGG 2 cut(s) 480, 1215
BssMI GATC 5 cut(s) 493, 769, 1009, 1081, 1210
BssNI GRCGYC 2 cut(s) 59, 367
BssT1I CCWWGG 2 cut(s) 480, 1215
Bst2UI CCWGG 2 cut(s) 312, 987
Bst4CI ACNGT 4 cut(s) 135, 870, 1103, 1165
Bst6I CTCTTC 1 cut(s) 1194
BstACI GRCGYC 2 cut(s) 59, 367
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 865
BstBAI YACGTR 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 227, 1114, 1261, 1286, 1323
BstDEI CTNAG 5 cut(s) 12, 26, 63, 384, 1326
BstF5I GGATG 5 cut(s) 793, 860, 915, 985, 1213
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 382
BstKTI GATC 5 cut(s) 496, 772, 1012, 1084, 1213
BstMAI GTCTC 2 cut(s) 66, 539
BstMBI GATC 5 cut(s) 493, 769, 1009, 1081, 1210
BstMWI GCNNNNNNNGC 5 cut(s) 22, 896, 1070, 1103, 1256
BstNI CCWGG 2 cut(s) 312, 987
BstSCI CCNGG 2 cut(s) 310, 985
BstSFI CTRYAG 2 cut(s) 267, 966
BstSNI TACGTA 1 cut(s) 209
BstV1I GCAGC 6 cut(s) 253, 281, 364, 629, 1012, 1259
BstX2I RGATCY 2 cut(s) 769, 1009
BstXI CCANNNNNNTGG 1 cut(s) 1020
BstYI RGATCY 2 cut(s) 769, 1009
BsuRI GGCC 3 cut(s) 225, 1274, 1288
BtsCI GGATG 5 cut(s) 793, 860, 915, 985, 1213
BtsIMutI CAGTG 4 cut(s) 102, 501, 619, 717
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 5 cut(s) 227, 1114, 1261, 1286, 1323
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 2 cut(s) 11, 382
Cfr10I RCCGGY 2 cut(s) 638, 1284
Cfr13I GGNCC 2 cut(s) 1272, 1287
CseI GACGC 2 cut(s) 48, 516
CsiI ACCWGGT 1 cut(s) 985
Csp6I GTAC 4 cut(s) 70, 866, 983, 1173
CspAI ACCGGT 1 cut(s) 638
CspCI CAANNNNNGTGG 4 cut(s) 78, 113, 838, 873
CviAII CATG 2 cut(s) 263, 287
CviQI GTAC 4 cut(s) 70, 866, 983, 1173
DdeI CTNAG 5 cut(s) 12, 26, 63, 384, 1326
DpnI GATC 5 cut(s) 495, 771, 1011, 1083, 1212
DpnII GATC 5 cut(s) 493, 769, 1009, 1081, 1210
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 1194
Eco105I TACGTA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 480, 1215
Eco24I GRGCYC 1 cut(s) 965
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 78, 912
EcoRII CCWGG 2 cut(s) 310, 985
EcoT14I CCWWGG 2 cut(s) 480, 1215
EcoT22I ATGCAT 1 cut(s) 1099
EcoT38I GRGCYC 1 cut(s) 965
ErhI CCWWGG 2 cut(s) 480, 1215
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 266, 290
FaqI GGGAC 2 cut(s) 313, 889
FatI CATG 2 cut(s) 262, 286
FauI CCCGC 1 cut(s) 1268
FauNDI CATATG 1 cut(s) 1108
FblI GTMKAC 2 cut(s) 144, 598
FokI GGATG 5 cut(s) 800, 867, 922, 992, 1220
FriOI GRGCYC 1 cut(s) 965
GlaI GCGC 2 cut(s) 10, 381
GsaI CCCAGC 1 cut(s) 997
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 3 cut(s) 225, 1274, 1288
HapII CCGG 4 cut(s) 180, 230, 639, 1285
HgaI GACGC 2 cut(s) 48, 516
HhaI GCGC 2 cut(s) 11, 382
Hin1I GRCGYC 2 cut(s) 59, 367
Hin1II CATG 2 cut(s) 266, 290
Hin6I GCGC 2 cut(s) 9, 380
HinP1I GCGC 2 cut(s) 9, 380
HincII GTYRAC 2 cut(s) 145, 932
HindII GTYRAC 2 cut(s) 145, 932
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 1 cut(s) 838
HpaII CCGG 4 cut(s) 180, 230, 639, 1285
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 5 cut(s) 145, 599, 739, 932, 1314
Hpy188I TCNGA 2 cut(s) 110, 571
Hpy188III TCNNGA 5 cut(s) 118, 371, 835, 1079, 1151
Hpy8I GTNNAC 5 cut(s) 145, 599, 739, 932, 1314
Hpy99I CGWCG 2 cut(s) 149, 1312
HpyAV CCTTC 1 cut(s) 1136
HpyCH4III ACNGT 4 cut(s) 135, 870, 1103, 1165
HpyCH4IV ACGT 3 cut(s) 208, 367, 735
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 896, 1070, 1103, 1256
HpyF3I CTNAG 5 cut(s) 12, 26, 63, 384, 1326
HpySE526I ACGT 3 cut(s) 208, 367, 735
Hsp92I GRCGYC 2 cut(s) 59, 367
Hsp92II CATG 2 cut(s) 266, 290
HspAI GCGC 2 cut(s) 9, 380
KpnI GGTACC 1 cut(s) 73
KroI GCCGGC 1 cut(s) 1284
KroNI GCCGGC 1 cut(s) 1286
Kzo9I GATC 5 cut(s) 493, 769, 1009, 1081, 1210
LmnI GCTCC 2 cut(s) 52, 960
Lsp1109I GCAGC 6 cut(s) 253, 281, 364, 629, 1012, 1259
LweI GCATC 5 cut(s) 85, 364, 893, 900, 1045
MabI ACCWGGT 1 cut(s) 985
MaeII ACGT 3 cut(s) 208, 367, 735
MaeIII GTNAC 3 cut(s) 421, 487, 761
MalI GATC 5 cut(s) 495, 771, 1011, 1083, 1212
MboI GATC 5 cut(s) 493, 769, 1009, 1081, 1210
MboII GAAGA 3 cut(s) 275, 905, 1211
MflI RGATCY 2 cut(s) 769, 1009
MhlI GDGCHC 2 cut(s) 390, 965
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 4 cut(s) 216, 251, 457, 750
MluNI TGGCCA 1 cut(s) 225
MmeI TCCRAC 2 cut(s) 743, 1185
Mox20I TGGCCA 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 1099
MroNI GCCGGC 1 cut(s) 1284
MroXI GAANNNNTTC 3 cut(s) 279, 447, 1146
MscI TGGCCA 1 cut(s) 225
MseI TTAA 2 cut(s) 335, 1241
Msp20I TGGCCA 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 25, 272
MspI CCGG 4 cut(s) 180, 230, 639, 1285
MspR9I CCNGG 2 cut(s) 312, 987
MvaI CCWGG 2 cut(s) 312, 987
MwoI GCNNNNNNNGC 5 cut(s) 22, 896, 1070, 1103, 1256
NaeI GCCGGC 1 cut(s) 1286
NdeI CATATG 1 cut(s) 1108
NdeII GATC 5 cut(s) 493, 769, 1009, 1081, 1210
NgoMIV GCCGGC 1 cut(s) 1284
NlaIII CATG 2 cut(s) 266, 290
NlaIV GGNNCC 6 cut(s) 48, 71, 478, 557, 771, 962
NmuCI GTSAC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 1099
NspV TTCGAA 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 1263
PdiI GCCGGC 1 cut(s) 1286
PdmI GAANNNNTTC 3 cut(s) 279, 447, 1146
PfeI GAWTC 1 cut(s) 838
PinAI ACCGGT 1 cut(s) 638
Ppu21I YACGTR 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 310, 985
PspFI CCCAGC 1 cut(s) 993
PspGI CCWGG 2 cut(s) 310, 985
PspN4I GGNNCC 6 cut(s) 48, 71, 478, 557, 771, 962
PspPI GGNCC 2 cut(s) 1272, 1287
PsrI GAACNNNNNNTAC 2 cut(s) 666, 698
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 2 cut(s) 769, 1009
RsaI GTAC 4 cut(s) 71, 867, 984, 1174
RsaNI GTAC 4 cut(s) 70, 866, 983, 1173
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 335, 1241
Sau3AI GATC 5 cut(s) 493, 769, 1009, 1081, 1210
Sau96I GGNCC 2 cut(s) 1272, 1287
ScrFI CCNGG 2 cut(s) 312, 987
SduI GDGCHC 2 cut(s) 390, 965
SexAI ACCWGGT 1 cut(s) 985
SfaNI GCATC 5 cut(s) 85, 364, 893, 900, 1045
SfcI CTRYAG 2 cut(s) 267, 966
SfuI TTCGAA 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 592, 794
SmoI CTYRAG 2 cut(s) 592, 794
SnaBI TACGTA 1 cut(s) 209
Sse9I AATT 4 cut(s) 216, 251, 457, 750
SsiI CCGC 5 cut(s) 23, 41, 44, 272, 1261
StyD4I CCNGG 2 cut(s) 310, 985
StyI CCWWGG 2 cut(s) 480, 1215
TaaI ACNGT 4 cut(s) 135, 870, 1103, 1165
TaiI ACGT 3 cut(s) 211, 370, 738
TaqI TCGA 2 cut(s) 144, 451
TasI AATT 4 cut(s) 216, 251, 457, 750
TatI WGTACW 1 cut(s) 865
TauI GCSGC 3 cut(s) 25, 44, 47
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 2 cut(s) 335, 1241
Tru9I TTAA 2 cut(s) 335, 1241
TscAI CASTG 4 cut(s) 102, 508, 619, 717
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 7 cut(s) 266, 269, 377, 617, 1025, 1247, 1318
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 3 cut(s) 275, 590, 804
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 4 cut(s) 102, 508, 619, 717
XapI RAATTY 1 cut(s) 251
XmiI GTMKAC 2 cut(s) 144, 598
XmnI GAANNNNTTC 3 cut(s) 279, 447, 1146
ZraI GACGTC 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.