Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007580

Physical Location & Seq

Genomic Coordinates Reverse (-)

28341821 .. 28347459

Gene Structure 5639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1197600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGATGGCAGCGGCTCGTACGACGTTGTCTCAGGGGTACCAGCATCATAATCAGCCAACTTCAGTGGAGGAGGTCAGAACCCTCTGGATTGGCGATTTACAGTATTGGGTCGATGAAAACTACCTCAATACCTGCTTTGCTCACACCGGAGAAGTGATTTCAATAAAGATAATACGTAATAAAATTACTGGCCAGCCGGAGGGTTATGGGTTTGTAGAATTTGTTTCTCATGCCGCAGCGGAAAGGGTGCTGCATGCTTACAATGGGACACAAATGCCTGGAACTGAACAAACTTTTAGGTTAAACTGGGCTTCCTTTGGTATTGGGGAAAGACGTCCTGATGCTGCGCCTGAGCACTCTATTTTCGTAGGCGATTTAGCCCCTGATGTTACAGATTATACGTTGCAAGAAACCTTTCAAACTAATTATCCATCAGTTAGAGGTGCCAAGGTTGTGACTGATCCTAACACTGGACGCTCAAAGGGATATGGGTTTGTCAAGTTTGCTGATGAGACTGAAAGGAACCGAGCTATGTCAGAAATGAATGGTCAGTATTGCTCAAGTAGACCAATGCGCATCAGTGCAGCAACACCGAAGAAAACCACCGGTTTTCAGCAACAATATGCTACTGCAAAAGTGGTATATCCTGTTCCAGCATACACTACACCAGCAGTTCCAGTACTTCCAACAGCAGATTATGACATAAACAACACTACAATTTTTGTTGGTAACTTGGATCCTAATGTGACGGAGGATGAACTCAAGCAAACTTTTATGCAGTTTGGAGAGATTTTCTATGTCAAGATTCCTGTGGGGAAAGGATGTGGTTTTGTACAGTTTGGGACAAGGGCATCGGCTGAAGAAGCTATCCAAAGGATGCAGGGAAAGATGATTGGTCAACAAGTAGTCCGTATTTCTTGGGGCAGAAGCCCAACAGTGAAACAGGATGTACCTGGTAGCTGGGGTCAGCAAGTAGATCCAAACCAATGGGCTGCATATTATGGTTACGGACAAGGCTACGATGCCTATGCTTACGGGGCTACTCCTGATCCATCATTATATGCATACGGTGCATATGCTGGCTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATGTTGCAACTGTGGGAGGTACTATCCTGTCTGTTGAACAGAGAGAAGAGTTGGATGATCCCTTGGTGACACCAGATGTTGATAAGTTAAATGCAGCTTACCTCGGCTACCACGAAAGGGCCATTTTGTGCCGGCCCTTGTGGTTGAGAACATCGTCATTTACGCAGCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

432

Amino Acids

47.9

Weight (kDa)

5.29

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	28 - 96	5.2e-14	RNA recognition motif
RRM_1	PF00076	121 - 191	2.4e-17	RNA recognition motif
RRM_1	PF00076	240 - 303	2.4e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19350 AT5G19350
fragaria_vesca	FvH4_1g30440 FvH4_1g30440 FvH4_1g30440
malus_domestica	MD03G1176800.v1.1 MD11G1197600.v1.1
prunus_persica	Prupe.5G028700_v2.0.a1 Prupe.5G028700_v2.0.a1
pyrus_communis	pycom03g13400 pycom11g17020
rosa_chinensis	RchiOBHm_Chr3g0491021
rosa_laevigata	RLG00000022869 RLG00000022873
rosa_multiflora	Rmu_sc0009408.1_g000001 Rmu_sc0019624.1_g000001 Rmu_ssc0000386.1_g000038
rosa_roxburghii	Rroxscaffold_6G00393280
rosa_rugosa	Rorug03G0245500 Rorug04G0070300
rosa_samantha	Rh3AG295500 Rh3BG331400 Rh3CG328900
rosa_wichuraiana	Rw3G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	337
Acc16I	TGCGCA	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	140
Acc65I	GGTACC	1 cut(s)	36
AccB1I	GGYRCC	2 cut(s)	36, 443
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	3 cut(s)	11, 234, 239
AclWI	GGATC	6 cut(s)	455, 731, 744, 971, 1043, 1172
AcoI	YGGCCR	2 cut(s)	190, 1087
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	45, 879
AcyI	GRCGYC	1 cut(s)	334
AfaI	GTAC	6 cut(s)	19, 38, 681, 834, 951, 1141
AfiI	CCNNNNNNNGG	3 cut(s)	199, 470, 1237
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	162, 419, 1109, 1118, 1157
AjnI	CCWGG	2 cut(s)	277, 952
AluBI	AGCT	5 cut(s)	530, 866, 960, 1217, 1292
AluI	AGCT	5 cut(s)	530, 866, 960, 1217, 1292
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	33, 506
AlwI	GGATC	6 cut(s)	455, 731, 744, 971, 1043, 1172
AoxI	GGCC	4 cut(s)	190, 1087, 1239, 1253
ApeKI	GCWGC	8 cut(s)	8, 236, 250, 344, 584, 992, 1214, 1285
ApoI	RAATTY	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	605
Asp700I	GAANNNNTTC	2 cut(s)	414, 1113
Asp718I	GGTACC	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	349, 576
AspS9I	GGNCC	2 cut(s)	1239, 1254
AsuHPI	GGTGA	1 cut(s)	1198
BalI	TGGCCA	2 cut(s)	192, 1089
BamHI	GGATCC	1 cut(s)	736
BanI	GGYRCC	2 cut(s)	36, 443
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	7 cut(s)	20, 237, 248, 331, 596, 979, 1226
BccI	CCATC	2 cut(s)	439, 1060
BcgI	CGANNNNNNTGC	2 cut(s)	1010, 1044
BciT130I	CCWGG	2 cut(s)	279, 954
BcoDI	GTCTC	2 cut(s)	33, 506
BfuAI	ACCTGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	681
Bme1390I	CCNGG	2 cut(s)	279, 954
BmgT120I	GGNCC	2 cut(s)	1239, 1254
BmiI	GGNNCC	4 cut(s)	38, 445, 524, 738
BmrFI	CCNGG	2 cut(s)	279, 954
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	6 cut(s)	52, 331, 585, 860, 867, 1012
BmuI	ACTGGG	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	544, 746
BsaAI	YACGTR	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	447, 1182, 1222
BsaWI	WCCGGW	2 cut(s)	146, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 470, 1237
Bse118I	RCCGGY	2 cut(s)	605, 1251
Bse1I	ACTGG	4 cut(s)	193, 311, 475, 677
BseBI	CCWGG	2 cut(s)	279, 954
BseDI	CCNNGG	3 cut(s)	447, 1182, 1222
BseGI	GGATG	5 cut(s)	760, 827, 882, 952, 1180
BseLI	CCNNNNNNNGG	3 cut(s)	199, 470, 1237
BseMII	CTCAG	2 cut(s)	44, 342
BseNI	ACTGG	4 cut(s)	193, 311, 475, 677
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	7 cut(s)	20, 237, 248, 331, 596, 979, 1226
BseYI	CCCAGC	1 cut(s)	960
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	4 cut(s)	192, 1089, 1241, 1255
BshNI	GGYRCC	2 cut(s)	36, 443
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	147, 197, 606, 1252
BsiWI	CGTACG	1 cut(s)	17
BslFI	GGGAC	2 cut(s)	280, 856
BslI	CCNNNNNNNGG	3 cut(s)	199, 470, 1237
BsmAI	GTCTC	2 cut(s)	33, 506
BsmFI	GGGAC	2 cut(s)	280, 856
BsnI	GGCC	4 cut(s)	192, 1089, 1241, 1255
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	832
Bsp143I	GATC	5 cut(s)	460, 736, 976, 1048, 1177
BspACI	CCGC	3 cut(s)	11, 234, 239
BspANI	GGCC	4 cut(s)	192, 1089, 1241, 1255
BspCNI	CTCAG	2 cut(s)	43, 343
BspLI	GGNNCC	4 cut(s)	38, 445, 524, 738
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	6 cut(s)	455, 731, 744, 971, 1043, 1172
BspT107I	GGYRCC	2 cut(s)	36, 443
BsrFI	RCCGGY	2 cut(s)	605, 1251
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	4 cut(s)	193, 311, 475, 677
BssAI	RCCGGY	2 cut(s)	605, 1251
BssECI	CCNNGG	3 cut(s)	447, 1182, 1222
BssMI	GATC	5 cut(s)	460, 736, 976, 1048, 1177
BssNI	GRCGYC	1 cut(s)	334
BssT1I	CCWWGG	2 cut(s)	447, 1182
Bst2UI	CCWGG	2 cut(s)	279, 954
Bst4CI	ACNGT	5 cut(s)	102, 837, 937, 1070, 1132
Bst6I	CTCTTC	1 cut(s)	1161
BstACI	GRCGYC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	832
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	5 cut(s)	194, 255, 1081, 1253, 1290
BstDEI	CTNAG	3 cut(s)	30, 351, 1293
BstF5I	GGATG	5 cut(s)	760, 827, 882, 952, 1180
BstHHI	GCGC	2 cut(s)	349, 576
BstKTI	GATC	5 cut(s)	463, 739, 979, 1051, 1180
BstMAI	GTCTC	2 cut(s)	33, 506
BstMBI	GATC	5 cut(s)	460, 736, 976, 1048, 1177
BstMWI	GCNNNNNNNGC	3 cut(s)	863, 1037, 1070
BstNI	CCWGG	2 cut(s)	279, 954
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	277, 952
BstSNI	TACGTA	1 cut(s)	176
BstV1I	GCAGC	7 cut(s)	20, 237, 248, 331, 596, 979, 1226
BstX2I	RGATCY	2 cut(s)	736, 976
BstXI	CCANNNNNNTGG	1 cut(s)	987
BstYI	RGATCY	2 cut(s)	736, 976
BsuRI	GGCC	4 cut(s)	192, 1089, 1241, 1255
BtsCI	GGATG	5 cut(s)	760, 827, 882, 952, 1180
BtsIMutI	CAGTG	4 cut(s)	69, 468, 586, 942
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	5 cut(s)	194, 255, 1081, 1253, 1290
CfoI	GCGC	2 cut(s)	349, 576
Cfr10I	RCCGGY	2 cut(s)	605, 1251
Cfr13I	GGNCC	2 cut(s)	1239, 1254
CseI	GACGC	1 cut(s)	483
CsiI	ACCWGGT	1 cut(s)	952
Csp6I	GTAC	6 cut(s)	18, 37, 680, 833, 950, 1140
CspAI	ACCGGT	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	2 cut(s)	230, 254
CviQI	GTAC	6 cut(s)	18, 37, 680, 833, 950, 1140
DdeI	CTNAG	3 cut(s)	30, 351, 1293
DpnI	GATC	5 cut(s)	462, 738, 978, 1050, 1179
DpnII	GATC	5 cut(s)	460, 736, 976, 1048, 1177
EaeI	YGGCCR	2 cut(s)	190, 1087
Eam1104I	CTCTTC	1 cut(s)	1161
EarI	CTCTTC	1 cut(s)	1161
Eco105I	TACGTA	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	447, 1182
Eco57I	CTGAAG	2 cut(s)	45, 879
EcoRII	CCWGG	2 cut(s)	277, 952
EcoT14I	CCWWGG	2 cut(s)	447, 1182
EcoT22I	ATGCAT	1 cut(s)	1066
ErhI	CCWWGG	2 cut(s)	447, 1182
FaeI	CATG	2 cut(s)	233, 257
FaqI	GGGAC	2 cut(s)	280, 856
FatI	CATG	2 cut(s)	229, 253
FauNDI	CATATG	1 cut(s)	1075
FblI	GTMKAC	1 cut(s)	565
FokI	GGATG	5 cut(s)	767, 834, 889, 959, 1187
FspAI	RTGCGCAY	1 cut(s)	575
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	2 cut(s)	348, 575
GsaI	CCCAGC	1 cut(s)	964
HaeIII	GGCC	4 cut(s)	192, 1089, 1241, 1255
HapII	CCGG	4 cut(s)	147, 197, 606, 1252
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	2 cut(s)	349, 576
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	2 cut(s)	233, 257
Hin6I	GCGC	2 cut(s)	347, 574
HinP1I	GCGC	2 cut(s)	347, 574
HincII	GTYRAC	1 cut(s)	899
HindII	GTYRAC	1 cut(s)	899
HindIII	AAGCTT	1 cut(s)	1290
HinfI	GANTC	1 cut(s)	805
HpaII	CCGG	4 cut(s)	147, 197, 606, 1252
HphI	GGTGA	1 cut(s)	1198
Hpy166II	GTNNAC	2 cut(s)	566, 899
Hpy188I	TCNGA	2 cut(s)	77, 538
Hpy188III	TCNNGA	5 cut(s)	85, 338, 802, 1046, 1118
Hpy8I	GTNNAC	2 cut(s)	566, 899
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	1103
HpyCH4III	ACNGT	5 cut(s)	102, 837, 937, 1070, 1132
HpyCH4IV	ACGT	4 cut(s)	23, 175, 334, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	863, 1037, 1070
HpyF3I	CTNAG	3 cut(s)	30, 351, 1293
HpySE526I	ACGT	4 cut(s)	23, 175, 334, 401
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	2 cut(s)	233, 257
HspAI	GCGC	2 cut(s)	347, 574
KpnI	GGTACC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	1251
KroNI	GCCGGC	1 cut(s)	1253
Kzo9I	GATC	5 cut(s)	460, 736, 976, 1048, 1177
Lsp1109I	GCAGC	7 cut(s)	20, 237, 248, 331, 596, 979, 1226
LweI	GCATC	6 cut(s)	52, 331, 585, 860, 867, 1012
MabI	ACCWGGT	1 cut(s)	952
MaeII	ACGT	4 cut(s)	23, 175, 334, 401
MaeIII	GTNAC	6 cut(s)	388, 454, 728, 745, 1004, 1186
MalI	GATC	5 cut(s)	462, 738, 978, 1050, 1179
MboI	GATC	5 cut(s)	460, 736, 976, 1048, 1177
MboII	GAAGA	3 cut(s)	607, 872, 1178
MflI	RGATCY	2 cut(s)	736, 976
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	2 cut(s)	192, 1089
MluCI	AATT	4 cut(s)	183, 218, 424, 717
MluNI	TGGCCA	2 cut(s)	192, 1089
MmeI	TCCRAC	2 cut(s)	710, 1152
Mox20I	TGGCCA	2 cut(s)	192, 1089
Mph1103I	ATGCAT	1 cut(s)	1066
MroNI	GCCGGC	1 cut(s)	1251
MroXI	GAANNNNTTC	2 cut(s)	414, 1113
MscI	TGGCCA	2 cut(s)	192, 1089
MseI	TTAA	2 cut(s)	302, 1208
Msp20I	TGGCCA	2 cut(s)	192, 1089
MspA1I	CMGCKG	2 cut(s)	11, 239
MspI	CCGG	4 cut(s)	147, 197, 606, 1252
MspR9I	CCNGG	2 cut(s)	279, 954
MvaI	CCWGG	2 cut(s)	279, 954
MwoI	GCNNNNNNNGC	3 cut(s)	863, 1037, 1070
NaeI	GCCGGC	1 cut(s)	1253
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	5 cut(s)	460, 736, 976, 1048, 1177
NgoMIV	GCCGGC	1 cut(s)	1251
NlaIII	CATG	2 cut(s)	233, 257
NlaIV	GGNNCC	4 cut(s)	38, 445, 524, 738
NmeAIII	GCCGAG	1 cut(s)	1203
NmuCI	GTSAC	3 cut(s)	454, 745, 1186
NsbI	TGCGCA	1 cut(s)	575
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	1230
PdiI	GCCGGC	1 cut(s)	1253
PdmI	GAANNNNTTC	2 cut(s)	414, 1113
PfeI	GAWTC	1 cut(s)	805
Pfl23II	CGTACG	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	277, 952
PspFI	CCCAGC	1 cut(s)	960
PspGI	CCWGG	2 cut(s)	277, 952
PspLI	CGTACG	1 cut(s)	17
PspN4I	GGNNCC	4 cut(s)	38, 445, 524, 738
PspPI	GGNCC	2 cut(s)	1239, 1254
PsrI	GAACNNNNNNTAC	2 cut(s)	633, 665
PsuI	RGATCY	2 cut(s)	736, 976
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	6 cut(s)	19, 38, 681, 834, 951, 1141
RsaNI	GTAC	6 cut(s)	18, 37, 680, 833, 950, 1140
SaqAI	TTAA	2 cut(s)	302, 1208
Sau3AI	GATC	5 cut(s)	460, 736, 976, 1048, 1177
Sau96I	GGNCC	2 cut(s)	1239, 1254
ScaI	AGTACT	1 cut(s)	681
ScrFI	CCNGG	2 cut(s)	279, 954
SduI	GDGCHC	1 cut(s)	357
SexAI	ACCWGGT	1 cut(s)	952
SfaNI	GCATC	6 cut(s)	52, 331, 585, 860, 867, 1012
SmlI	CTYRAG	2 cut(s)	559, 761
SmoI	CTYRAG	2 cut(s)	559, 761
SnaBI	TACGTA	1 cut(s)	176
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	4 cut(s)	183, 218, 424, 717
SsiI	CCGC	3 cut(s)	11, 234, 239
StyD4I	CCNGG	2 cut(s)	277, 952
StyI	CCWWGG	2 cut(s)	447, 1182
TaaI	ACNGT	5 cut(s)	102, 837, 937, 1070, 1132
TaiI	ACGT	4 cut(s)	26, 178, 337, 404
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	183, 218, 424, 717
TatI	WGTACW	2 cut(s)	679, 832
TauI	GCSGC	2 cut(s)	14, 236
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	2 cut(s)	302, 1208
Tru9I	TTAA	2 cut(s)	302, 1208
TscAI	CASTG	4 cut(s)	69, 475, 586, 942
TseFI	GTSAC	3 cut(s)	454, 745, 1186
TseI	GCWGC	8 cut(s)	8, 236, 250, 344, 584, 992, 1214, 1285
Tsp45I	GTSAC	3 cut(s)	454, 745, 1186
TspDTI	ATGAA	3 cut(s)	129, 557, 771
TspGWI	ACGGA	3 cut(s)	764, 899, 1023
TspRI	CASTG	4 cut(s)	69, 475, 586, 942
Tth111I	GACNNNGTC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	2 cut(s)	414, 1113
ZraI	GACGTC	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.