Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007580

Physical Location & Seq

Genomic Coordinates Forward (+)

13846276 .. 13852200

Gene Structure 5925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCAGGCCTACTTTTTTTTTTGAGAAGGTTGTCAGGCCTACAGGACTGGGTCGACGAGAACTACCTCACTACCTGCTTCGCTCACACCGGCGAGGTGATTTCTATAAAGATCATACGTAACAAAATCACTGGGCAGCCGGAGGGTTATGGCTTTGTGGAGTTTGTCTCACACGCCGCAGCCGAAAGGATTCTGCATGCTTACAATGGCACTCAAATGCCTGGAACTGAGCAGACTTTTAGGTTGAATTGGGCTTCTTTCGGTATCGGCGAACGGCGTCCTGATGCTGGCCCTGAGCACTCCATTTTCGTAGGGGATTTGGCCCCTGATGTCACCGATTATGTGCTGCAAGAGACTTTTCGGAATACGTATCCATCCGTTAGAGGTGCCAAGGTTGTCACTGATCCAAACACTGGACGCTCGAAAGGTTATGGCTTTGTCAAGTTTGCTGATGAGGCGGAAAGGAACCGTGCTATGACCGAAATGAATGGTGTTTATTGCTCGACCAGGCCGATGAGGATCAGTGCAGCAACACCAAAGAAAACCACTGGTTTTCAGCAGCAGTATGCTGCAGCAAAAGCTGTATATCCTGTTCCGGCATACACTACATCAGCAGTTCCAGTAGTACCAACAGCAGATTATGATGCAAACAACACTACGATTTTTGTTGGAAACTTGGATCCTAATATTACTGAGGAGGAATTGAAGCAAACTTTTTTGCAATTTGGAGATATTGTCTATGTCAAGATTCCTGCAGGCAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATACAAAGGATGCAAGGAAAGATGATTGGCCAACAAGTGGTCCGCATTTCTTGGGGTAGGAGCCCAACAGCTAAACAGGATGTACCTGGTAGCTGGGGCCAGCAAGTAGATCCAAATCAATGGAGTGCATATTATGGTTATGGTCAAGGCTATGATCCCTATGCCTATGGAGCTTCTCAAGATCCATCATTGTATGCATACAGTGGATATGCCGGTTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATATGGCAGCTATGGCTGGTACTGTTCCATCTTTAGAACAGAGGGATGAACTGGATGATCCCTTGGCTACACCTGATGTTGACAAGTTGAATGCTGCTTACCTCTCTGTACATGGAAGGGCCATTTTGGGCCACCCCTTGTGGCTAAGAACATCAGCGTTTCCGCAGCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

413

Amino Acids

45.34

Weight (kDa)

5.48

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	14 - 77	7.4e-12	RNA recognition motif
RRM_1	PF00076	102 - 167	2.6e-16	RNA recognition motif
RRM_1	PF00076	221 - 284	6.7e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19350 AT5G19350
fragaria_vesca	FvH4_1g30440 FvH4_1g30440 FvH4_1g30440
malus_domestica	MD03G1176800.v1.1 MD11G1197600.v1.1
prunus_persica	Prupe.5G028700_v2.0.a1 Prupe.5G028700_v2.0.a1
pyrus_communis	pycom03g13400 pycom11g17020
rosa_chinensis	RchiOBHm_Chr3g0491021
rosa_laevigata	RLG00000022869 RLG00000022873
rosa_multiflora	Rmu_sc0009408.1_g000001 Rmu_sc0019624.1_g000001 Rmu_ssc0000386.1_g000038
rosa_roxburghii	Rroxscaffold_6G00393280
rosa_rugosa	Rorug03G0245500 Rorug04G0070300
rosa_samantha	Rh3AG295500 Rh3BG331400 Rh3CG328900
rosa_wichuraiana	Rw3G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	2 cut(s)	413, 847
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	177, 458, 853, 1226
AclWI	GGATC	8 cut(s)	398, 527, 674, 687, 914, 959, 986, 1115
AcoI	YGGCCR	2 cut(s)	838, 1030
AcuI	CTGAAG	1 cut(s)	822
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	5 cut(s)	627, 777, 894, 1084, 1173
AfiI	CCNNNNNNNGG	3 cut(s)	287, 413, 847
AgsI	TTSAA	5 cut(s)	247, 706, 1052, 1061, 1153
AjnI	CCWGG	3 cut(s)	220, 506, 895
AluBI	AGCT	6 cut(s)	581, 809, 881, 903, 983, 1073
AluI	AGCT	6 cut(s)	581, 809, 881, 903, 983, 1073
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	172, 347
AlwI	GGATC	8 cut(s)	398, 527, 674, 687, 914, 959, 986, 1115
Asp700I	GAANNNNTTC	2 cut(s)	189, 1056
AspS9I	GGNCC	6 cut(s)	290, 322, 850, 907, 1182, 1192
AsuHPI	GGTGA	2 cut(s)	109, 325
AvaII	GGWCC	1 cut(s)	850
BalI	TGGCCA	2 cut(s)	840, 1032
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	875
BarI	GAAGNNNNNNTAC	2 cut(s)	795, 827
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	9 cut(s)	148, 191, 333, 539, 556, 571, 584, 1082, 1144
BccI	CCATC	3 cut(s)	382, 1003, 1099
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	222, 508, 897
BciVI	GTATCC	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	172, 347
BfmI	CTRYAG	3 cut(s)	41, 570, 753
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	381
Bme1390I	CCNGG	3 cut(s)	222, 508, 897
Bme18I	GGWCC	1 cut(s)	850
BmgT120I	GGNCC	6 cut(s)	290, 322, 850, 907, 1182, 1192
BmiI	GGNNCC	6 cut(s)	324, 388, 467, 681, 872, 908
BmrFI	CCNGG	3 cut(s)	222, 508, 897
BmrI	ACTGGG	2 cut(s)	58, 141
BmsI	GCATC	4 cut(s)	274, 634, 803, 810
BmuI	ACTGGG	2 cut(s)	58, 141
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	972
BsaAI	YACGTR	2 cut(s)	119, 369
BsaBI	GATNNNNATC	2 cut(s)	518, 924
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	390, 1125
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 413, 847
Bse118I	RCCGGY	2 cut(s)	89, 1022
Bse1I	ACTGG	6 cut(s)	53, 136, 418, 553, 620, 1119
Bse8I	GATNNNNATC	2 cut(s)	518, 924
BseBI	CCWGG	3 cut(s)	222, 508, 897
BseDI	CCNNGG	2 cut(s)	390, 1125
BseGI	GGATG	5 cut(s)	374, 825, 895, 1114, 1123
BseJI	GATNNNNATC	2 cut(s)	518, 924
BseLI	CCNNNNNNNGG	3 cut(s)	287, 413, 847
BseMII	CTCAG	3 cut(s)	219, 285, 684
BseNI	ACTGG	6 cut(s)	53, 136, 418, 553, 620, 1119
BseRI	GAGGAG	1 cut(s)	710
BseXI	GCAGC	9 cut(s)	148, 191, 333, 539, 556, 571, 584, 1082, 1144
BseYI	CCCAGC	1 cut(s)	903
BsgI	GTGCAG	1 cut(s)	546
BshNI	GGYRCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	4 cut(s)	90, 140, 596, 1023
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	3 cut(s)	287, 413, 847
BsmAI	GTCTC	2 cut(s)	172, 347
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	1 cut(s)	1159
Bsp1286I	GDGCHC	2 cut(s)	300, 875
Bsp1407I	TGTACA	2 cut(s)	775, 1171
Bsp143I	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
BspACI	CCGC	4 cut(s)	177, 458, 853, 1226
BspCNI	CTCAG	3 cut(s)	220, 286, 685
BspLI	GGNNCC	6 cut(s)	324, 388, 467, 681, 872, 908
BspMAI	CTGCAG	2 cut(s)	574, 757
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	8 cut(s)	398, 527, 674, 687, 914, 959, 986, 1115
BspT107I	GGYRCC	1 cut(s)	386
BsrFI	RCCGGY	2 cut(s)	89, 1022
BsrGI	TGTACA	2 cut(s)	775, 1171
BsrI	ACTGG	6 cut(s)	53, 136, 418, 553, 620, 1119
BssAI	RCCGGY	2 cut(s)	89, 1022
BssECI	CCNNGG	2 cut(s)	390, 1125
BssMI	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
BssNI	GRCGYC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	390, 1125
Bst2UI	CCWGG	3 cut(s)	222, 508, 897
Bst4CI	ACNGT	4 cut(s)	470, 780, 1013, 1087
BstACI	GRCGYC	1 cut(s)	277
BstAUI	TGTACA	2 cut(s)	775, 1171
BstBAI	YACGTR	2 cut(s)	119, 369
BstC8I	GCNNGC	5 cut(s)	198, 289, 757, 911, 1233
BstDEI	CTNAG	4 cut(s)	228, 294, 693, 1208
BstF5I	GGATG	5 cut(s)	374, 825, 895, 1114, 1123
BstKTI	GATC	8 cut(s)	114, 406, 522, 682, 922, 967, 994, 1123
BstMAI	GTCTC	2 cut(s)	172, 347
BstMBI	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
BstMWI	GCNNNNNNNGC	5 cut(s)	455, 578, 806, 980, 1076
BstNI	CCWGG	3 cut(s)	222, 508, 897
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	220, 506, 895
BstSFI	CTRYAG	3 cut(s)	41, 570, 753
BstSNI	TACGTA	2 cut(s)	119, 369
BstV1I	GCAGC	9 cut(s)	148, 191, 333, 539, 556, 571, 584, 1082, 1144
BstX2I	RGATCY	3 cut(s)	679, 919, 991
BstXI	CCANNNNNNTGG	1 cut(s)	930
BstYI	RGATCY	3 cut(s)	679, 919, 991
BsuI	GTATCC	1 cut(s)	381
BtsCI	GGATG	5 cut(s)	374, 825, 895, 1114, 1123
BtsIMutI	CAGTG	6 cut(s)	129, 399, 411, 529, 546, 1018
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	5 cut(s)	198, 289, 757, 911, 1233
Cfr10I	RCCGGY	2 cut(s)	89, 1022
Cfr13I	GGNCC	6 cut(s)	290, 322, 850, 907, 1182, 1192
CseI	GACGC	2 cut(s)	266, 426
CsiI	ACCWGGT	1 cut(s)	895
Csp6I	GTAC	5 cut(s)	626, 776, 893, 1083, 1172
CspCI	CAANNNNNGTGG	2 cut(s)	748, 783
CviAII	CATG	2 cut(s)	197, 1175
CviQI	GTAC	5 cut(s)	626, 776, 893, 1083, 1172
DdeI	CTNAG	4 cut(s)	228, 294, 693, 1208
DpnI	GATC	8 cut(s)	113, 405, 521, 681, 921, 966, 993, 1122
DpnII	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
EaeI	YGGCCR	2 cut(s)	838, 1030
EciI	GGCGGA	1 cut(s)	473
Eco105I	TACGTA	2 cut(s)	119, 369
Eco130I	CCWWGG	2 cut(s)	390, 1125
Eco147I	AGGCCT	2 cut(s)	9, 39
Eco24I	GRGCYC	1 cut(s)	875
Eco47I	GGWCC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	822
EcoRII	CCWGG	3 cut(s)	220, 506, 895
EcoT14I	CCWWGG	2 cut(s)	390, 1125
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	2 cut(s)	390, 1125
FaeI	CATG	2 cut(s)	200, 1178
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	2 cut(s)	196, 1174
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	5 cut(s)	361, 832, 902, 1121, 1130
FriOI	GRGCYC	1 cut(s)	875
GsaI	CCCAGC	1 cut(s)	907
HapII	CCGG	4 cut(s)	90, 140, 596, 1023
HgaI	GACGC	2 cut(s)	266, 426
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	200, 1178
HincII	GTYRAC	2 cut(s)	55, 1144
HindII	GTYRAC	2 cut(s)	55, 1144
HinfI	GANTC	2 cut(s)	190, 748
HpaII	CCGG	4 cut(s)	90, 140, 596, 1023
HphI	GGTGA	2 cut(s)	109, 325
Hpy166II	GTNNAC	2 cut(s)	55, 1144
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	4 cut(s)	281, 745, 989, 1061
Hpy8I	GTNNAC	2 cut(s)	55, 1144
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	21, 1046, 1173
HpyCH4III	ACNGT	4 cut(s)	470, 780, 1013, 1087
HpyCH4IV	ACGT	2 cut(s)	118, 368
HpyF10VI	GCNNNNNNNGC	5 cut(s)	455, 578, 806, 980, 1076
HpyF3I	CTNAG	4 cut(s)	228, 294, 693, 1208
HpySE526I	ACGT	2 cut(s)	118, 368
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	200, 1178
Kzo9I	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
LmnI	GCTCC	2 cut(s)	870, 980
Lsp1109I	GCAGC	9 cut(s)	148, 191, 333, 539, 556, 571, 584, 1082, 1144
LweI	GCATC	4 cut(s)	274, 634, 803, 810
MabI	ACCWGGT	1 cut(s)	895
MaeII	ACGT	2 cut(s)	118, 368
MaeIII	GTNAC	3 cut(s)	119, 331, 397
MalI	GATC	8 cut(s)	113, 405, 521, 681, 921, 966, 993, 1122
MboI	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
MboII	GAAGA	1 cut(s)	815
MflI	RGATCY	3 cut(s)	679, 919, 991
MhlI	GDGCHC	2 cut(s)	300, 875
MlsI	TGGCCA	2 cut(s)	840, 1032
MluCI	AATT	3 cut(s)	247, 701, 722
MluNI	TGGCCA	2 cut(s)	840, 1032
MmeI	TCCRAC	1 cut(s)	649
Mox20I	TGGCCA	2 cut(s)	840, 1032
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	2 cut(s)	189, 1056
MscI	TGGCCA	2 cut(s)	840, 1032
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	2 cut(s)	840, 1032
MspI	CCGG	4 cut(s)	90, 140, 596, 1023
MspR9I	CCNGG	3 cut(s)	222, 508, 897
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	3 cut(s)	222, 508, 897
MwoI	GCNNNNNNNGC	5 cut(s)	455, 578, 806, 980, 1076
NdeII	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
NlaIII	CATG	2 cut(s)	200, 1178
NlaIV	GGNNCC	6 cut(s)	324, 388, 467, 681, 872, 908
NmuCI	GTSAC	2 cut(s)	331, 397
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PceI	AGGCCT	2 cut(s)	9, 39
PcsI	WCGNNNNNNNCGW	3 cut(s)	180, 267, 509
PctI	GAATGC	1 cut(s)	1159
PdmI	GAANNNNTTC	2 cut(s)	189, 1056
PfeI	GAWTC	2 cut(s)	190, 748
PflFI	GACNNNGTC	1 cut(s)	50
PflMI	CCANNNNNTGG	2 cut(s)	413, 847
Ppu21I	YACGTR	2 cut(s)	119, 369
Psp6I	CCWGG	3 cut(s)	220, 506, 895
PspFI	CCCAGC	1 cut(s)	903
PspGI	CCWGG	3 cut(s)	220, 506, 895
PspN4I	GGNNCC	6 cut(s)	324, 388, 467, 681, 872, 908
PspPI	GGNCC	6 cut(s)	290, 322, 850, 907, 1182, 1192
PsrI	GAACNNNNNNTAC	2 cut(s)	576, 608
PstI	CTGCAG	2 cut(s)	574, 757
PsuI	RGATCY	3 cut(s)	679, 919, 991
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	5 cut(s)	627, 777, 894, 1084, 1173
RsaNI	GTAC	5 cut(s)	626, 776, 893, 1083, 1172
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	53
Sau3AI	GATC	8 cut(s)	111, 403, 519, 679, 919, 964, 991, 1120
Sau96I	GGNCC	6 cut(s)	290, 322, 850, 907, 1182, 1192
SbfI	CCTGCAGG	1 cut(s)	757
ScrFI	CCNGG	3 cut(s)	222, 508, 897
SdaI	CCTGCAGG	1 cut(s)	757
SduI	GDGCHC	2 cut(s)	300, 875
SexAI	ACCWGGT	1 cut(s)	895
SfaNI	GCATC	4 cut(s)	274, 634, 803, 810
SfcI	CTRYAG	3 cut(s)	41, 570, 753
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	850
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
SnaBI	TACGTA	2 cut(s)	119, 369
SphI	GCATGC	1 cut(s)	200
Sse8387I	CCTGCAGG	1 cut(s)	757
Sse9I	AATT	3 cut(s)	247, 701, 722
SseBI	AGGCCT	2 cut(s)	9, 39
SsiI	CCGC	4 cut(s)	177, 458, 853, 1226
SspI	AATATT	1 cut(s)	688
StuI	AGGCCT	2 cut(s)	9, 39
StyD4I	CCNGG	3 cut(s)	220, 506, 895
StyI	CCWWGG	2 cut(s)	390, 1125
TaaI	ACNGT	4 cut(s)	470, 780, 1013, 1087
TaiI	ACGT	2 cut(s)	121, 371
TaqI	TCGA	3 cut(s)	54, 422, 503
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	3 cut(s)	247, 701, 722
TatI	WGTACW	2 cut(s)	775, 1171
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	190, 748
TscAI	CASTG	6 cut(s)	136, 406, 418, 529, 553, 1018
TseFI	GTSAC	2 cut(s)	331, 397
Tsp45I	GTSAC	2 cut(s)	331, 397
TspDTI	ATGAA	2 cut(s)	500, 1125
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	6 cut(s)	136, 406, 418, 529, 553, 1018
Tth111I	GACNNNGTC	1 cut(s)	50
Van91I	CCANNNNNTGG	2 cut(s)	413, 847
VpaK11BI	GGWCC	1 cut(s)	850
XceI	RCATGY	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	2 cut(s)	189, 1056
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.