Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007580

Physical Location & Seq

Genomic Coordinates Reverse (-)

36126457 .. 36368302

Gene Structure 241846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCTGGAACTGAGCAGACTTTTAGGTTGAATTGGGCTTCTTTCGGTATCGGCGAACGGCGTCCTGATGCCGGCCCTGAGCACTCCATTTTCGTAGGGGATTTGGCCCCTGATGTCACCGATTATGTGCTGCAAGAGACTTTTCGGAATACGTATCCGTCCGTTAGAGGTGCCAAGGTTGTCACTGATCCAAACACTGGACGCTCCAAAGGTTATGGCTTTGTCAAGTTTGCTGAGGAGGCGGAAAGGAACCGTGCTATGACCGAAATGAATGGTGTTTATTGCTCGACTAGGCCCATGCGGATCAGTGCAGCAACACCAAAGAAAACCACTGGTTTTCAGCAGCAGTATGCTGCAGCAAAAGCTGTATATCCTGTTCCAGCATACACTACACCAGCAGTTCCAGTAGTACCAACAGCAGATTATGATGCAAACAACACTACGATTTTTGTTGGAAACTTGGATCCTAATATTACTGAGGAGGAATTGAAGCAAACGTTTTTGCAATTTGGAGATATTGTCTATGTCAAGATTCCTGCAGGCAAAGGCTGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATACAAAGGATGCAAGGAAAGATGATTGGCCAACAAGTGGTCCGCATTTCTTGGGGTAGGAGCCCAACAGCTAAACAGGATGTACCTGGTAGCTGGGGCCAGCAAGTAGATCCAAATCAATGGAGTGCATATTATGGTTATGGTCAAGGCTATGATCCCTATGCCTATGGAGCTTCTCAAGATCCATCGTTGTATGCATACAGTGGATATGCCGGTTATGGCCAATATCCTCAACAGGCATGTCTATTTAAATTCAGTTTTGGATGGATGCATATGGTTGCTTTCAATCAGATTTTAATTTTTCTTTTTCTTGTAATGTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

306

Amino Acids

33.94

Weight (kDa)

6.74

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	30 - 95	5.1e-16	RNA recognition motif
RRM_1	PF00076	149 - 212	4.2e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19350 AT5G19350
fragaria_vesca	FvH4_1g30440 FvH4_1g30440 FvH4_1g30440
malus_domestica	MD03G1176800.v1.1 MD11G1197600.v1.1
prunus_persica	Prupe.5G028700_v2.0.a1 Prupe.5G028700_v2.0.a1
pyrus_communis	pycom03g13400 pycom11g17020
rosa_chinensis	RchiOBHm_Chr3g0491021
rosa_laevigata	RLG00000022869 RLG00000022873
rosa_multiflora	Rmu_sc0009408.1_g000001 Rmu_sc0019624.1_g000001 Rmu_ssc0000386.1_g000038
rosa_roxburghii	Rroxscaffold_6G00393280
rosa_rugosa	Rorug03G0245500 Rorug04G0070300
rosa_samantha	Rh3AG295500 Rh3BG331400 Rh3CG328900
rosa_wichuraiana	Rw3G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccB7I	CCANNNNNTGG	2 cut(s)	197, 631
AciI	CCGC	3 cut(s)	242, 301, 637
AclI	AACGTT	1 cut(s)	497
AclWI	GGATC	7 cut(s)	182, 311, 458, 471, 698, 743, 770
AcoI	YGGCCR	2 cut(s)	622, 814
AcsI	RAATTY	1 cut(s)	845
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	3 cut(s)	411, 561, 678
AfiI	CCNNNNNNNGG	3 cut(s)	71, 197, 631
AgsI	TTSAA	3 cut(s)	31, 490, 880
AjnI	CCWGG	2 cut(s)	4, 679
AluBI	AGCT	5 cut(s)	365, 593, 665, 687, 767
AluI	AGCT	5 cut(s)	365, 593, 665, 687, 767
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	7 cut(s)	182, 311, 458, 471, 698, 743, 770
AoxI	GGCC	6 cut(s)	73, 105, 293, 622, 691, 814
ApeKI	GCWGC	5 cut(s)	130, 311, 343, 353, 356
ApoI	RAATTY	1 cut(s)	845
AspS9I	GGNCC	5 cut(s)	74, 106, 294, 634, 691
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	634
BalI	TGGCCA	2 cut(s)	624, 816
BamHI	GGATCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	659
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
Bbv12I	GWGCWC	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	5 cut(s)	117, 323, 340, 355, 368
BccI	CCATC	2 cut(s)	787, 852
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	6, 681
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	2 cut(s)	354, 537
BfuI	GTATCC	1 cut(s)	165
BisI	GCNGC	5 cut(s)	131, 312, 344, 354, 357
BlsI	GCNGC	5 cut(s)	132, 313, 345, 355, 358
Bme1390I	CCNGG	2 cut(s)	6, 681
Bme18I	GGWCC	1 cut(s)	634
BmgT120I	GGNCC	5 cut(s)	74, 106, 294, 634, 691
BmiI	GGNNCC	6 cut(s)	108, 172, 251, 465, 656, 692
BmrFI	CCNGG	2 cut(s)	6, 681
BmsI	GCATC	5 cut(s)	58, 418, 587, 594, 852
Bpu10I	CCTNAGC	2 cut(s)	78, 234
BpuEI	CTTGAG	1 cut(s)	756
BsaAI	YACGTR	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 197, 631
Bse118I	RCCGGY	2 cut(s)	71, 806
Bse1I	ACTGG	3 cut(s)	202, 337, 404
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	6, 681
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	4 cut(s)	609, 679, 863, 867
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	3 cut(s)	71, 197, 631
BseMII	CTCAG	3 cut(s)	69, 225, 468
BseNI	ACTGG	3 cut(s)	202, 337, 404
BseRI	GAGGAG	2 cut(s)	251, 494
BseXI	GCAGC	5 cut(s)	117, 323, 340, 355, 368
BseYI	CCCAGC	1 cut(s)	687
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	6 cut(s)	75, 107, 295, 624, 693, 816
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	72, 807
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	3 cut(s)	71, 197, 631
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	6 cut(s)	75, 107, 295, 624, 693, 816
Bsp1286I	GDGCHC	2 cut(s)	84, 659
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
BspACI	CCGC	3 cut(s)	242, 301, 637
BspANI	GGCC	6 cut(s)	75, 107, 295, 624, 693, 816
BspCNI	CTCAG	4 cut(s)	4, 70, 226, 469
BspLI	GGNNCC	6 cut(s)	108, 172, 251, 465, 656, 692
BspMAI	CTGCAG	2 cut(s)	358, 541
BspPI	GGATC	7 cut(s)	182, 311, 458, 471, 698, 743, 770
BspT107I	GGYRCC	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	71, 806
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	202, 337, 404
BssAI	RCCGGY	2 cut(s)	71, 806
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	6, 681
Bst4CI	ACNGT	3 cut(s)	254, 564, 797
BstACI	GRCGYC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	559
BstBAI	YACGTR	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	73, 541, 695
BstDEI	CTNAG	4 cut(s)	12, 78, 234, 477
BstF5I	GGATG	4 cut(s)	609, 679, 863, 867
BstKTI	GATC	6 cut(s)	190, 306, 466, 706, 751, 778
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 362, 590, 764
BstNI	CCWGG	2 cut(s)	6, 681
BstNSI	RCATGY	1 cut(s)	837
BstSCI	CCNGG	2 cut(s)	4, 679
BstSFI	CTRYAG	2 cut(s)	354, 537
BstSNI	TACGTA	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	117, 323, 340, 355, 368
BstX2I	RGATCY	3 cut(s)	463, 703, 775
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	3 cut(s)	463, 703, 775
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	6 cut(s)	75, 107, 295, 624, 693, 816
BtsCI	GGATG	4 cut(s)	609, 679, 863, 867
BtsIMutI	CAGTG	5 cut(s)	183, 195, 313, 330, 802
Cac8I	GCNNGC	3 cut(s)	73, 541, 695
Cfr10I	RCCGGY	2 cut(s)	71, 806
Cfr13I	GGNCC	5 cut(s)	74, 106, 294, 634, 691
CseI	GACGC	2 cut(s)	50, 210
CsiI	ACCWGGT	1 cut(s)	679
Csp6I	GTAC	3 cut(s)	410, 560, 677
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	2 cut(s)	298, 834
CviQI	GTAC	3 cut(s)	410, 560, 677
DdeI	CTNAG	4 cut(s)	12, 78, 234, 477
DpnI	GATC	6 cut(s)	189, 305, 465, 705, 750, 777
DpnII	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
DraI	TTTAAA	1 cut(s)	844
EaeI	YGGCCR	2 cut(s)	622, 814
EciI	GGCGGA	1 cut(s)	257
Eco105I	TACGTA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	4, 679
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	2 cut(s)	793, 867
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	301, 837
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	297, 833
FauNDI	CATATG	1 cut(s)	867
Fnu4HI	GCNGC	5 cut(s)	131, 312, 344, 354, 357
FokI	GGATG	4 cut(s)	616, 686, 870, 874
FriOI	GRGCYC	1 cut(s)	659
Fsp4HI	GCNGC	5 cut(s)	131, 312, 344, 354, 357
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	5 cut(s)	131, 312, 344, 354, 357
GsaI	CCCAGC	1 cut(s)	691
HaeIII	GGCC	6 cut(s)	75, 107, 295, 624, 693, 816
HapII	CCGG	2 cut(s)	72, 807
HgaI	GACGC	2 cut(s)	50, 210
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	301, 837
HinfI	GANTC	1 cut(s)	532
HpaII	CCGG	2 cut(s)	72, 807
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	147, 885
Hpy188III	TCNNGA	3 cut(s)	65, 529, 773
HpyCH4III	ACNGT	3 cut(s)	254, 564, 797
HpyCH4IV	ACGT	2 cut(s)	152, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 362, 590, 764
HpyF3I	CTNAG	4 cut(s)	12, 78, 234, 477
HpySE526I	ACGT	2 cut(s)	152, 497
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	301, 837
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
LmnI	GCTCC	3 cut(s)	209, 654, 764
Lsp1109I	GCAGC	5 cut(s)	117, 323, 340, 355, 368
LweI	GCATC	5 cut(s)	58, 418, 587, 594, 852
MabI	ACCWGGT	1 cut(s)	679
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	152, 497
MaeIII	GTNAC	2 cut(s)	115, 181
MalI	GATC	6 cut(s)	189, 305, 465, 705, 750, 777
MboI	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
MboII	GAAGA	1 cut(s)	599
MflI	RGATCY	3 cut(s)	463, 703, 775
MhlI	GDGCHC	2 cut(s)	84, 659
MlsI	TGGCCA	2 cut(s)	624, 816
MluCI	AATT	5 cut(s)	31, 485, 506, 845, 891
MluNI	TGGCCA	2 cut(s)	624, 816
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	161, 229, 232, 472, 475, 834
Mox20I	TGGCCA	2 cut(s)	624, 816
Mph1103I	ATGCAT	2 cut(s)	793, 867
MroNI	GCCGGC	1 cut(s)	71
MscI	TGGCCA	2 cut(s)	624, 816
MseI	TTAA	3 cut(s)	843, 890, 919
Msp20I	TGGCCA	2 cut(s)	624, 816
MspI	CCGG	2 cut(s)	72, 807
MspR9I	CCNGG	2 cut(s)	6, 681
MvaI	CCWGG	2 cut(s)	6, 681
MwoI	GCNNNNNNNGC	4 cut(s)	239, 362, 590, 764
NaeI	GCCGGC	1 cut(s)	73
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	301, 837
NlaIV	GGNNCC	6 cut(s)	108, 172, 251, 465, 656, 692
NmuCI	GTSAC	2 cut(s)	115, 181
NsiI	ATGCAT	2 cut(s)	793, 867
NspI	RCATGY	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	532
PflMI	CCANNNNNTGG	2 cut(s)	197, 631
PkrI	GCNGC	5 cut(s)	132, 313, 345, 355, 358
Ppu21I	YACGTR	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	497
Psp6I	CCWGG	2 cut(s)	4, 679
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	2 cut(s)	4, 679
PspN4I	GGNNCC	6 cut(s)	108, 172, 251, 465, 656, 692
PspPI	GGNCC	5 cut(s)	74, 106, 294, 634, 691
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstI	CTGCAG	2 cut(s)	358, 541
PsuI	RGATCY	3 cut(s)	463, 703, 775
RsaI	GTAC	3 cut(s)	411, 561, 678
RsaNI	GTAC	3 cut(s)	410, 560, 677
SaqAI	TTAA	3 cut(s)	843, 890, 919
SatI	GCNGC	5 cut(s)	131, 312, 344, 354, 357
Sau3AI	GATC	6 cut(s)	187, 303, 463, 703, 748, 775
Sau96I	GGNCC	5 cut(s)	74, 106, 294, 634, 691
SbfI	CCTGCAGG	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	6, 681
SdaI	CCTGCAGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	84, 659
SexAI	ACCWGGT	1 cut(s)	679
SfaNI	GCATC	5 cut(s)	58, 418, 587, 594, 852
SfcI	CTRYAG	2 cut(s)	354, 537
SinI	GGWCC	1 cut(s)	634
SmiI	ATTTAAAT	1 cut(s)	844
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
SnaBI	TACGTA	1 cut(s)	153
Sse8387I	CCTGCAGG	1 cut(s)	541
Sse9I	AATT	5 cut(s)	31, 485, 506, 845, 891
SsiI	CCGC	3 cut(s)	242, 301, 637
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	4, 679
StyI	CCWWGG	1 cut(s)	174
SwaI	ATTTAAAT	1 cut(s)	844
TaaI	ACNGT	3 cut(s)	254, 564, 797
TaiI	ACGT	2 cut(s)	155, 500
TaqI	TCGA	1 cut(s)	287
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	5 cut(s)	31, 485, 506, 845, 891
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	3 cut(s)	843, 890, 919
Tru9I	TTAA	3 cut(s)	843, 890, 919
TscAI	CASTG	5 cut(s)	190, 202, 313, 337, 802
TseFI	GTSAC	2 cut(s)	115, 181
TseI	GCWGC	5 cut(s)	130, 311, 343, 353, 356
Tsp45I	GTSAC	2 cut(s)	115, 181
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	2 cut(s)	147, 151
TspRI	CASTG	5 cut(s)	190, 202, 313, 337, 802
Van91I	CCANNNNNTGG	2 cut(s)	197, 631
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	1 cut(s)	845
XceI	RCATGY	1 cut(s)	837
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	2 cut(s)	793, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.