Rmu_ssc0000386.1_g000038

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000386.1
Physical Location & Seq
Reverse (-)
187980 .. 193961
5982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000386.1_g000038.1.cds

Sequence Viewer

Length: 984 bp
atgatgaacgcgcaggctcagccggcaatggcaggtcctcagggttaccctcatcatcaacctacttcagtcgaagaggtcagaaccctctggattggtgatctacagtactgggtcgacgagaactacctcactacttgctttgctcacaccggcgaggtgatttctataaagatcatacgtaacaaaatcactgggcagcccgagggctatggctttgtggagtttgtctcacacgccgcggccgaaaggattctgcatgcttacaatggcactcaaatgcctggaactgagcagacttttaggttgaattgggcttctttcggtatcggcgaacggcgtcctgatgccggccctgagcactccattttcgtaggggatttggcccctgatgtcaccgattatgtgctgcaagagacttttcggaatacgtatccgtccgttagaggtgccaaggttgtcactgatccaaacactggacgctccaaaggttatggctttgtcaagtttgctgatgaggcggaaaggaaccgtgctatgaccgaaatgaatggtgtttattgctcgactaggccgatgcggatcagtgcagcaacaccaaagaaaaccactggctttcagcagcagtatgctgcagcaaaagctgtatatcctgttccggcatacactacaccagcagttccagtagtaccaacagcagattatgatgcaaacaacactacgatttttgttggaaacttggatcctaatattactgaggaggaattgaagcaaacttttttgcaatttggagatattgtctatgtcaagattcctgcaggcaaaggctgtggttttgtacagtttgggacaaggtttgttgaaggagttcaagatatggcagctatggctggtactgttccatctttagaacagagggatgaactggatgatcccttggctacacctgatgttgacaagtacagcttctaccccttttcatga

Protein Analysis

327

Amino Acids

36.13

Weight (kDa)

5.05

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 11, 242
AciI CCGC 4 cut(s) 240, 242, 521, 580
AclWI GGATC 5 cut(s) 461, 590, 737, 750, 926
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 5 cut(s) 110, 690, 840, 895, 962
AfiI CCNNNNNNNGG 2 cut(s) 350, 476
AgsI TTSAA 4 cut(s) 310, 769, 863, 872
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 644, 884, 966
AluI AGCT 3 cut(s) 644, 884, 966
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 235, 410
AlwI GGATC 5 cut(s) 461, 590, 737, 750, 926
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 4 cut(s) 243, 352, 384, 572
ApeKI GCWGC 7 cut(s) 199, 409, 590, 622, 632, 635, 881
Asp700I GAANNNNTTC 2 cut(s) 252, 867
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 3 cut(s) 35, 353, 385
AsuHPI GGTGA 3 cut(s) 110, 172, 388
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 35
AxyI CCTNAGG 1 cut(s) 39
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 7 cut(s) 211, 396, 602, 619, 634, 647, 893
BccI CCATC 1 cut(s) 910
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 235, 410
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 3 cut(s) 104, 633, 816
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 9 cut(s) 200, 240, 243, 410, 591, 623, 633, 636, 882
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 9 cut(s) 201, 241, 244, 411, 592, 624, 634, 637, 883
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 3 cut(s) 35, 353, 385
BmiI GGNNCC 4 cut(s) 387, 451, 530, 744
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 2 cut(s) 121, 204
BmsI GCATC 3 cut(s) 337, 567, 697
BmuI ACTGGG 2 cut(s) 121, 204
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 18
BsaAI YACGTR 2 cut(s) 182, 432
BsaBI GATNNNNATC 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 4 cut(s) 204, 240, 453, 936
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 476
Bse118I RCCGGY 3 cut(s) 22, 152, 350
Bse1I ACTGG 6 cut(s) 116, 199, 481, 616, 683, 930
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 204, 240, 453, 936
BseGI GGATG 2 cut(s) 925, 934
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 2 cut(s) 350, 476
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 5 cut(s) 32, 53, 282, 348, 747
BseNI ACTGG 6 cut(s) 116, 199, 481, 616, 683, 930
BseRI GAGGAG 1 cut(s) 773
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 7 cut(s) 211, 396, 602, 619, 634, 647, 893
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 2 cut(s) 11, 242
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 245, 354, 386, 574
BshNI GGYRCC 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 23, 153, 351, 659
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 2 cut(s) 350, 476
BsmAI GTCTC 2 cut(s) 235, 410
BsmFI GGGAC 1 cut(s) 862
BsnI GGCC 4 cut(s) 245, 354, 386, 574
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 6 cut(s) 100, 174, 466, 582, 742, 931
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 4 cut(s) 240, 242, 521, 580
BspANI GGCC 4 cut(s) 245, 354, 386, 574
BspCNI CTCAG 5 cut(s) 31, 52, 283, 349, 748
BspFNI CGCG 2 cut(s) 11, 242
BspHI TCATGA 1 cut(s) 980
BspLI GGNNCC 4 cut(s) 387, 451, 530, 744
BspMAI CTGCAG 2 cut(s) 637, 820
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 5 cut(s) 461, 590, 737, 750, 926
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 22, 152, 350
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 6 cut(s) 116, 199, 481, 616, 683, 930
BssAI RCCGGY 3 cut(s) 22, 152, 350
BssECI CCNNGG 4 cut(s) 204, 240, 453, 936
BssMI GATC 6 cut(s) 100, 174, 466, 582, 742, 931
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 453, 936
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 4 cut(s) 108, 533, 843, 898
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 838
BstBAI YACGTR 2 cut(s) 182, 432
BstC8I GCNNGC 5 cut(s) 15, 24, 261, 352, 820
BstDEI CTNAG 5 cut(s) 18, 39, 291, 357, 756
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 2 cut(s) 925, 934
BstFNI CGCG 2 cut(s) 11, 242
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 6 cut(s) 103, 177, 469, 585, 745, 934
BstMAI GTCTC 2 cut(s) 235, 410
BstMBI GATC 6 cut(s) 100, 174, 466, 582, 742, 931
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 887
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 3 cut(s) 104, 633, 816
BstSNI TACGTA 2 cut(s) 182, 432
BstUI CGCG 2 cut(s) 11, 242
BstV1I GCAGC 7 cut(s) 211, 396, 602, 619, 634, 647, 893
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 39
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 4 cut(s) 245, 354, 386, 574
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 925, 934
BtsIMutI CAGTG 5 cut(s) 192, 462, 474, 592, 609
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 5 cut(s) 15, 24, 261, 352, 820
CciI TCATGA 1 cut(s) 980
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 3 cut(s) 22, 152, 350
Cfr13I GGNCC 3 cut(s) 35, 353, 385
Cfr42I CCGCGG 1 cut(s) 243
CseI GACGC 2 cut(s) 329, 489
Csp6I GTAC 5 cut(s) 109, 689, 839, 894, 961
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 2 cut(s) 260, 981
CviQI GTAC 5 cut(s) 109, 689, 839, 894, 961
DdeI CTNAG 5 cut(s) 18, 39, 291, 357, 756
DpnI GATC 6 cut(s) 102, 176, 468, 584, 744, 933
DpnII GATC 6 cut(s) 100, 174, 466, 582, 742, 931
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 536
EclXI CGGCCG 1 cut(s) 243
Eco105I TACGTA 2 cut(s) 182, 432
Eco130I CCWWGG 2 cut(s) 453, 936
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 453, 936
ErhI CCWWGG 2 cut(s) 453, 936
FaeI CATG 2 cut(s) 263, 984
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FaqI GGGAC 1 cut(s) 862
FatI CATG 2 cut(s) 259, 980
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 9 cut(s) 200, 240, 243, 410, 591, 623, 633, 636, 882
FokI GGATG 2 cut(s) 932, 941
Fsp4HI GCNGC 9 cut(s) 200, 240, 243, 410, 591, 623, 633, 636, 882
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 12
GluI GCNGC 9 cut(s) 200, 240, 243, 410, 591, 623, 633, 636, 882
HaeIII GGCC 4 cut(s) 245, 354, 386, 574
HapII CCGG 4 cut(s) 23, 153, 351, 659
HgaI GACGC 2 cut(s) 329, 489
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 2 cut(s) 263, 984
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 2 cut(s) 118, 955
HindII GTYRAC 2 cut(s) 118, 955
HinfI GANTC 2 cut(s) 253, 811
HpaII CCGG 4 cut(s) 23, 153, 351, 659
HphI GGTGA 3 cut(s) 110, 172, 388
Hpy166II GTNNAC 2 cut(s) 118, 955
Hpy188I TCNGA 2 cut(s) 83, 426
Hpy188III TCNNGA 5 cut(s) 91, 344, 808, 872, 981
Hpy8I GTNNAC 2 cut(s) 118, 955
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 857
HpyCH4III ACNGT 4 cut(s) 108, 533, 843, 898
HpyCH4IV ACGT 2 cut(s) 181, 431
HpyCH4V TGCA 7 cut(s) 259, 412, 590, 635, 710, 784, 818
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 887
HpyF3I CTNAG 5 cut(s) 18, 39, 291, 357, 756
HpySE526I ACGT 2 cut(s) 181, 431
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 2 cut(s) 263, 984
HspAI GCGC 1 cut(s) 11
KroI GCCGGC 2 cut(s) 22, 350
KroNI GCCGGC 2 cut(s) 24, 352
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 6 cut(s) 100, 174, 466, 582, 742, 931
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 7 cut(s) 211, 396, 602, 619, 634, 647, 893
LweI GCATC 3 cut(s) 337, 567, 697
MaeI CTAG 1 cut(s) 570
MaeII ACGT 2 cut(s) 181, 431
MaeIII GTNAC 4 cut(s) 44, 182, 394, 460
MalI GATC 6 cut(s) 102, 176, 468, 584, 744, 933
MboI GATC 6 cut(s) 100, 174, 466, 582, 742, 931
MboII GAAGA 1 cut(s) 86
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 310, 764, 785
MmeI TCCRAC 1 cut(s) 712
MroNI GCCGGC 2 cut(s) 22, 350
MroXI GAANNNNTTC 2 cut(s) 252, 867
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 4 cut(s) 23, 153, 351, 659
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 11, 242
MwoI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 887
NaeI GCCGGC 2 cut(s) 24, 352
NdeII GATC 6 cut(s) 100, 174, 466, 582, 742, 931
NgoMIV GCCGGC 2 cut(s) 22, 350
NlaIII CATG 2 cut(s) 263, 984
NlaIV GGNNCC 4 cut(s) 387, 451, 530, 744
NmuCI GTSAC 2 cut(s) 394, 460
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PagI TCATGA 1 cut(s) 980
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 330, 572
PdiI GCCGGC 2 cut(s) 24, 352
PdmI GAANNNNTTC 2 cut(s) 252, 867
PfeI GAWTC 2 cut(s) 253, 811
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 9 cut(s) 201, 241, 244, 411, 592, 624, 634, 637, 883
Ppu21I YACGTR 2 cut(s) 182, 432
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 4 cut(s) 387, 451, 530, 744
PspPI GGNCC 3 cut(s) 35, 353, 385
PspPPI RGGWCCY 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 2 cut(s) 637, 820
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 5 cut(s) 110, 690, 840, 895, 962
RsaNI GTAC 5 cut(s) 109, 689, 839, 894, 961
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 243
SalI GTCGAC 1 cut(s) 116
SatI GCNGC 9 cut(s) 200, 240, 243, 410, 591, 623, 633, 636, 882
Sau3AI GATC 6 cut(s) 100, 174, 466, 582, 742, 931
Sau96I GGNCC 3 cut(s) 35, 353, 385
SbfI CCTGCAGG 1 cut(s) 820
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 285
SdaI CCTGCAGG 1 cut(s) 820
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 3 cut(s) 337, 567, 697
SfcI CTRYAG 3 cut(s) 104, 633, 816
Sfr303I CCGCGG 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 152
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 278
SnaBI TACGTA 2 cut(s) 182, 432
SphI GCATGC 1 cut(s) 263
Sse8387I CCTGCAGG 1 cut(s) 820
Sse9I AATT 3 cut(s) 310, 764, 785
SsiI CCGC 4 cut(s) 240, 242, 521, 580
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 453, 936
TaaI ACNGT 4 cut(s) 108, 533, 843, 898
TaiI ACGT 2 cut(s) 184, 434
TaqI TCGA 3 cut(s) 72, 117, 566
TaqII GACCGA 1 cut(s) 557
TasI AATT 3 cut(s) 310, 764, 785
TatI WGTACW 3 cut(s) 108, 838, 960
TauI GCSGC 2 cut(s) 242, 245
TfiI GAWTC 2 cut(s) 253, 811
TscAI CASTG 5 cut(s) 199, 469, 481, 592, 616
TseFI GTSAC 2 cut(s) 394, 460
TseI GCWGC 7 cut(s) 199, 409, 590, 622, 632, 635, 881
Tsp45I GTSAC 2 cut(s) 394, 460
TspDTI ATGAA 4 cut(s) 20, 563, 936, 969
TspGWI ACGGA 2 cut(s) 426, 430
TspRI CASTG 5 cut(s) 199, 469, 481, 592, 616
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 35
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 2 cut(s) 252, 867
XspI CTAG 1 cut(s) 570
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.