Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007580

Physical Location & Seq

Genomic Coordinates Forward (+)

13258863 .. 13265432

Gene Structure 6570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAGGGAAAGATGATTGGCCAACAAGTGGTCCGCATTTCTTGGGGTAGGAGCCCAACAGCTAAACAGGATGTACCTGGTAGCTGGGGCCAGCAAGTAGATCCAAACCAATGGAGTGCATATTATGGTTATGGTCAAGGCTATGATCCCTATGCCTATGGAGCTTCTCAAGATCCATCGTTGTATGCATACAGTGGATATGCCGGTTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATATGGCAGCTATGGCTGGTACTGTTCCATCTTTAGAACAGAGGGATGAACTGGATGATCCTTTGGCTACACCTGATGTTGACAAGTTGAATGCTGCTTACCTCTCTGTACATGGAAGGGCCATTTTGGGCCACCCCTTGTGGCTAAGAACATCAGCGTTTACGCAGCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

139

Amino Acids

15.23

Weight (kDa)

4.68

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19350 AT5G19350
fragaria_vesca	FvH4_1g30440 FvH4_1g30440 FvH4_1g30440
malus_domestica	MD03G1176800.v1.1 MD11G1197600.v1.1
prunus_persica	Prupe.5G028700_v2.0.a1 Prupe.5G028700_v2.0.a1
pyrus_communis	pycom03g13400 pycom11g17020
rosa_chinensis	RchiOBHm_Chr3g0491021
rosa_laevigata	RLG00000022869 RLG00000022873
rosa_multiflora	Rmu_sc0009408.1_g000001 Rmu_sc0019624.1_g000001 Rmu_ssc0000386.1_g000038
rosa_roxburghii	Rroxscaffold_6G00393280
rosa_rugosa	Rorug03G0245500 Rorug04G0070300
rosa_samantha	Rh3AG295500 Rh3BG331400 Rh3CG328900
rosa_wichuraiana	Rw3G026080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	4 cut(s)	95, 140, 167, 296
AcoI	YGGCCR	2 cut(s)	19, 211
AfaI	GTAC	3 cut(s)	75, 265, 354
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	233, 242, 334
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	4 cut(s)	62, 84, 164, 254
AluI	AGCT	4 cut(s)	62, 84, 164, 254
AlwI	GGATC	4 cut(s)	95, 140, 167, 296
AoxI	GGCC	5 cut(s)	19, 88, 211, 363, 373
ApeKI	GCWGC	3 cut(s)	251, 338, 409
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	31, 88, 363, 373
AvaII	GGWCC	1 cut(s)	31
BalI	TGGCCA	2 cut(s)	21, 213
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	263, 325
BccI	CCATC	2 cut(s)	184, 280
BciT130I	CCWGG	1 cut(s)	78
BisI	GCNGC	3 cut(s)	252, 339, 410
BlsI	GCNGC	3 cut(s)	253, 340, 411
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	4 cut(s)	31, 88, 363, 373
BmiI	GGNNCC	2 cut(s)	53, 89
BmrFI	CCNGG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	3 cut(s)	76, 295, 304
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	263, 325
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	5 cut(s)	21, 90, 213, 365, 375
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	5 cut(s)	21, 90, 213, 365, 375
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	100, 145, 172, 301
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	5 cut(s)	21, 90, 213, 365, 375
BspLI	GGNNCC	2 cut(s)	53, 89
BspPI	GGATC	4 cut(s)	95, 140, 167, 296
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	4 cut(s)	100, 145, 172, 301
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	194, 268
BstAUI	TGTACA	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	92, 414
BstDEI	CTNAG	1 cut(s)	389
BstF5I	GGATG	3 cut(s)	76, 295, 304
BstKTI	GATC	4 cut(s)	103, 148, 175, 304
BstMBI	GATC	4 cut(s)	100, 145, 172, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 257
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	263, 325
BstX2I	RGATCY	2 cut(s)	100, 172
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	100, 172
BsuRI	GGCC	5 cut(s)	21, 90, 213, 365, 375
BtsCI	GGATG	3 cut(s)	76, 295, 304
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	92, 414
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	4 cut(s)	31, 88, 363, 373
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	74, 264, 353
CviAII	CATG	1 cut(s)	356
CviQI	GTAC	3 cut(s)	74, 264, 353
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	4 cut(s)	102, 147, 174, 303
DpnII	GATC	4 cut(s)	100, 145, 172, 301
EaeI	YGGCCR	2 cut(s)	19, 211
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	1 cut(s)	359
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	252, 339, 410
FokI	GGATG	3 cut(s)	83, 302, 311
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	252, 339, 410
GluI	GCNGC	3 cut(s)	252, 339, 410
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	5 cut(s)	21, 90, 213, 365, 375
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	2 cut(s)	325, 405
Hpy188III	TCNNGA	2 cut(s)	170, 242
Hpy8I	GTNNAC	2 cut(s)	325, 405
HpyAV	CCTTC	2 cut(s)	227, 354
HpyCH4III	ACNGT	2 cut(s)	194, 268
HpyCH4V	TGCA	3 cut(s)	4, 119, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 257
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	4 cut(s)	100, 145, 172, 301
LmnI	GCTCC	2 cut(s)	51, 161
Lsp1109I	GCAGC	2 cut(s)	263, 325
MabI	ACCWGGT	1 cut(s)	76
MalI	GATC	4 cut(s)	102, 147, 174, 303
MboI	GATC	4 cut(s)	100, 145, 172, 301
MflI	RGATCY	2 cut(s)	100, 172
MhlI	GDGCHC	1 cut(s)	56
MlsI	TGGCCA	2 cut(s)	21, 213
MluNI	TGGCCA	2 cut(s)	21, 213
MnlI	CCTC	3 cut(s)	231, 279, 356
Mox20I	TGGCCA	2 cut(s)	21, 213
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	237
MscI	TGGCCA	2 cut(s)	21, 213
Msp20I	TGGCCA	2 cut(s)	21, 213
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	161, 257
NdeII	GATC	4 cut(s)	100, 145, 172, 301
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	53, 89
NsiI	ATGCAT	1 cut(s)	190
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	253, 340, 411
Psp6I	CCWGG	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	53, 89
PspPI	GGNCC	4 cut(s)	31, 88, 363, 373
PsuI	RGATCY	2 cut(s)	100, 172
RsaI	GTAC	3 cut(s)	75, 265, 354
RsaNI	GTAC	3 cut(s)	74, 264, 353
SatI	GCNGC	3 cut(s)	252, 339, 410
Sau3AI	GATC	4 cut(s)	100, 145, 172, 301
Sau96I	GGNCC	4 cut(s)	31, 88, 363, 373
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	8 cut(s)	64, 79, 86, 166, 231, 256, 319, 348
SexAI	ACCWGGT	1 cut(s)	76
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SsiI	CCGC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	194, 268
TatI	WGTACW	1 cut(s)	352
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	251, 338, 409
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.