Rmu_sc0019624.1_g000001

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019624.1
Physical Location & Seq
Reverse (-)
2 .. 2185
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019624.1_g000001.1.cds

Sequence Viewer

Length: 938 bp
atgatgaacgcgcaggctcagccggcaatggcaggtcctcagggttaccctcatcatcagcctacttcagtcgaagaggtcagaaccctctggattggtgatctacagtactgggtcgacgagaactacctcactacttgctttgctcacaccggcgaggtgatttctataaagatcatacgtaacaaaatcactgggcagcccgagggctatggctttgtggagtttgtctcacacgccgcggccgaaaggattctgcatgcttacaatggcactcaaatgcctggaactgagcagacttttaggttgaattgggcttctttcggtatcggcgaacggcgtcctgatgctggccctgagcactccattttcgtaggggatttggcccctgatgtcaccgattatgtgctgcaagagacttttcggaatacgtatccgtccgttagaggtgccaaggttgtcactgatccaaacactggacgctccaaaggttatggctttgtcaagtttgctgatgaggcggaaaggaaccgtgctatgaccgaaatgaatggtgtttattgctcgactaggccgatgcggatcagtgcagcaacaccaaagaaaaccactggctttcagcagcagtatgctgcagcaaaagctgtatatcctgttccggcatacactacaccagcagttccagtagtaccaacagcagattatgatgcaaacaacactacgatttttgttggaaacttggatcctaatattactgaggaggaattgaagcaaacttttttgcaatttggagatattgtctatgtcaagattcctgcaggcaaaggctgtggttttgtacagtttgggacaagggcgtctgctgaagaagctatacaaaggatgcaaggaaagatgattggccaacaagtggtccgcatttcttggggtaggagccc

Protein Analysis

313

Amino Acids

34.59

Weight (kDa)

6.32

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 2 cut(s) 476, 910
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 11, 242
AciI CCGC 5 cut(s) 240, 242, 521, 580, 916
AclWI GGATC 4 cut(s) 461, 590, 737, 750
AcoI YGGCCR 2 cut(s) 243, 901
AcuI CTGAAG 2 cut(s) 51, 885
AcyI GRCGYC 2 cut(s) 340, 857
AfaI GTAC 3 cut(s) 110, 690, 840
AfiI CCNNNNNNNGG 3 cut(s) 350, 476, 910
AgsI TTSAA 2 cut(s) 310, 769
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 2 cut(s) 644, 872
AluI AGCT 2 cut(s) 644, 872
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 235, 410
AlwI GGATC 4 cut(s) 461, 590, 737, 750
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 5 cut(s) 243, 352, 384, 572, 901
ApeKI GCWGC 6 cut(s) 199, 409, 590, 622, 632, 635
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 4 cut(s) 35, 353, 385, 913
AsuHPI GGTGA 3 cut(s) 110, 172, 388
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 2 cut(s) 35, 913
AxyI CCTNAGG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 903
BamHI GGATCC 1 cut(s) 742
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 6 cut(s) 211, 396, 602, 619, 634, 647
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 235, 410
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 3 cut(s) 104, 633, 816
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 8 cut(s) 200, 240, 243, 410, 591, 623, 633, 636
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 8 cut(s) 201, 241, 244, 411, 592, 624, 634, 637
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 2 cut(s) 35, 913
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 35, 353, 385, 913
BmiI GGNNCC 5 cut(s) 387, 451, 530, 744, 935
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 2 cut(s) 121, 204
BmsI GCATC 4 cut(s) 337, 567, 697, 873
BmuI ACTGGG 2 cut(s) 121, 204
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 18
BsaAI YACGTR 2 cut(s) 182, 432
BsaBI GATNNNNATC 1 cut(s) 581
BsaHI GRCGYC 2 cut(s) 340, 857
BsaJI CCNNGG 3 cut(s) 204, 240, 453
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 476, 910
Bse118I RCCGGY 2 cut(s) 22, 152
Bse1I ACTGG 5 cut(s) 116, 199, 481, 616, 683
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 204, 240, 453
BseGI GGATG 1 cut(s) 888
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 5 cut(s) 32, 53, 282, 348, 747
BseNI ACTGG 5 cut(s) 116, 199, 481, 616, 683
BseRI GAGGAG 1 cut(s) 773
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 6 cut(s) 211, 396, 602, 619, 634, 647
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 2 cut(s) 11, 242
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 245, 354, 386, 574, 903
BshNI GGYRCC 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 3 cut(s) 23, 153, 659
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 350, 476, 910
BsmAI GTCTC 2 cut(s) 235, 410
BsmFI GGGAC 1 cut(s) 862
BsnI GGCC 5 cut(s) 245, 354, 386, 574, 903
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 363, 938
Bsp1407I TGTACA 1 cut(s) 838
Bsp143I GATC 5 cut(s) 100, 174, 466, 582, 742
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 5 cut(s) 240, 242, 521, 580, 916
BspANI GGCC 5 cut(s) 245, 354, 386, 574, 903
BspCNI CTCAG 5 cut(s) 31, 52, 283, 349, 748
BspFNI CGCG 2 cut(s) 11, 242
BspLI GGNNCC 5 cut(s) 387, 451, 530, 744, 935
BspMAI CTGCAG 2 cut(s) 637, 820
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 4 cut(s) 461, 590, 737, 750
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 22, 152
BsrGI TGTACA 1 cut(s) 838
BsrI ACTGG 5 cut(s) 116, 199, 481, 616, 683
BssAI RCCGGY 2 cut(s) 22, 152
BssECI CCNNGG 3 cut(s) 204, 240, 453
BssMI GATC 5 cut(s) 100, 174, 466, 582, 742
BssNI GRCGYC 2 cut(s) 340, 857
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 108, 533, 843
Bst6I CTCTTC 1 cut(s) 69
BstACI GRCGYC 2 cut(s) 340, 857
BstAUI TGTACA 1 cut(s) 838
BstBAI YACGTR 2 cut(s) 182, 432
BstC8I GCNNGC 5 cut(s) 15, 24, 261, 352, 820
BstDEI CTNAG 5 cut(s) 18, 39, 291, 357, 756
BstDSI CCRYGG 1 cut(s) 240
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 1 cut(s) 888
BstFNI CGCG 2 cut(s) 11, 242
BstHHI GCGC 1 cut(s) 13
BstKTI GATC 5 cut(s) 103, 177, 469, 585, 745
BstMAI GTCTC 2 cut(s) 235, 410
BstMBI GATC 5 cut(s) 100, 174, 466, 582, 742
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 869
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 3 cut(s) 104, 633, 816
BstSNI TACGTA 2 cut(s) 182, 432
BstUI CGCG 2 cut(s) 11, 242
BstV1I GCAGC 6 cut(s) 211, 396, 602, 619, 634, 647
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 39
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 5 cut(s) 245, 354, 386, 574, 903
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 888
BtsIMutI CAGTG 5 cut(s) 192, 462, 474, 592, 609
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 5 cut(s) 15, 24, 261, 352, 820
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 22, 152
Cfr13I GGNCC 4 cut(s) 35, 353, 385, 913
Cfr42I CCGCGG 1 cut(s) 243
CseI GACGC 3 cut(s) 329, 489, 846
Csp6I GTAC 3 cut(s) 109, 689, 839
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 1 cut(s) 260
CviQI GTAC 3 cut(s) 109, 689, 839
DdeI CTNAG 5 cut(s) 18, 39, 291, 357, 756
DpnI GATC 5 cut(s) 102, 176, 468, 584, 744
DpnII GATC 5 cut(s) 100, 174, 466, 582, 742
DrdI GACNNNNNNGTC 1 cut(s) 856
DseDI GACNNNNNNGTC 1 cut(s) 856
EaeI YGGCCR 2 cut(s) 243, 901
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 536
EclXI CGGCCG 1 cut(s) 243
Eco105I TACGTA 2 cut(s) 182, 432
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 2 cut(s) 35, 913
Eco52I CGGCCG 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 51, 885
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 1 cut(s) 263
FaqI GGGAC 1 cut(s) 862
FatI CATG 1 cut(s) 259
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 8 cut(s) 200, 240, 243, 410, 591, 623, 633, 636
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 8 cut(s) 200, 240, 243, 410, 591, 623, 633, 636
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 12
GluI GCNGC 8 cut(s) 200, 240, 243, 410, 591, 623, 633, 636
HaeIII GGCC 5 cut(s) 245, 354, 386, 574, 903
HapII CCGG 3 cut(s) 23, 153, 659
HgaI GACGC 3 cut(s) 329, 489, 846
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 2 cut(s) 340, 857
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 253, 811
HpaII CCGG 3 cut(s) 23, 153, 659
HphI GGTGA 3 cut(s) 110, 172, 388
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 83, 426
Hpy188III TCNNGA 3 cut(s) 91, 344, 808
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 3 cut(s) 108, 533, 843
HpyCH4IV ACGT 2 cut(s) 181, 431
HpyCH4V TGCA 8 cut(s) 259, 412, 590, 635, 710, 784, 818, 886
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 869
HpyF3I CTNAG 5 cut(s) 18, 39, 291, 357, 756
HpySE526I ACGT 2 cut(s) 181, 431
Hsp92I GRCGYC 2 cut(s) 340, 857
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 11
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 5 cut(s) 100, 174, 466, 582, 742
LmnI GCTCC 2 cut(s) 488, 933
Lsp1109I GCAGC 6 cut(s) 211, 396, 602, 619, 634, 647
LweI GCATC 4 cut(s) 337, 567, 697, 873
MaeI CTAG 1 cut(s) 570
MaeII ACGT 2 cut(s) 181, 431
MaeIII GTNAC 4 cut(s) 44, 182, 394, 460
MalI GATC 5 cut(s) 102, 176, 468, 584, 744
MboI GATC 5 cut(s) 100, 174, 466, 582, 742
MboII GAAGA 2 cut(s) 86, 878
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 2 cut(s) 363, 938
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 3 cut(s) 310, 764, 785
MluNI TGGCCA 1 cut(s) 903
MmeI TCCRAC 1 cut(s) 712
Mox20I TGGCCA 1 cut(s) 903
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 903
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 3 cut(s) 23, 153, 659
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 11, 242
MwoI GCNNNNNNNGC 5 cut(s) 19, 23, 518, 641, 869
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 5 cut(s) 100, 174, 466, 582, 742
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 5 cut(s) 387, 451, 530, 744, 935
NmuCI GTSAC 2 cut(s) 394, 460
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 3 cut(s) 243, 330, 572
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 253, 811
PflMI CCANNNNNTGG 2 cut(s) 476, 910
PkrI GCNGC 8 cut(s) 201, 241, 244, 411, 592, 624, 634, 637
Ppu21I YACGTR 2 cut(s) 182, 432
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 283
PspEI GGTNACC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 5 cut(s) 387, 451, 530, 744, 935
PspPI GGNCC 4 cut(s) 35, 353, 385, 913
PspPPI RGGWCCY 1 cut(s) 35
PsrI GAACNNNNNNTAC 2 cut(s) 639, 671
PstI CTGCAG 2 cut(s) 637, 820
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 110, 690, 840
RsaNI GTAC 3 cut(s) 109, 689, 839
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 243
SalI GTCGAC 1 cut(s) 116
SatI GCNGC 8 cut(s) 200, 240, 243, 410, 591, 623, 633, 636
Sau3AI GATC 5 cut(s) 100, 174, 466, 582, 742
Sau96I GGNCC 4 cut(s) 35, 353, 385, 913
SbfI CCTGCAGG 1 cut(s) 820
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 285
SdaI CCTGCAGG 1 cut(s) 820
SduI GDGCHC 2 cut(s) 363, 938
SfaNI GCATC 4 cut(s) 337, 567, 697, 873
SfcI CTRYAG 3 cut(s) 104, 633, 816
Sfr303I CCGCGG 1 cut(s) 243
SgrAI CRCCGGYG 1 cut(s) 152
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 2 cut(s) 35, 913
SmiMI CAYNNNNRTG 1 cut(s) 278
SnaBI TACGTA 2 cut(s) 182, 432
SphI GCATGC 1 cut(s) 263
Sse8387I CCTGCAGG 1 cut(s) 820
Sse9I AATT 3 cut(s) 310, 764, 785
SsiI CCGC 5 cut(s) 240, 242, 521, 580, 916
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 3 cut(s) 108, 533, 843
TaiI ACGT 2 cut(s) 184, 434
TaqI TCGA 3 cut(s) 72, 117, 566
TaqII GACCGA 1 cut(s) 557
TasI AATT 3 cut(s) 310, 764, 785
TatI WGTACW 2 cut(s) 108, 838
TauI GCSGC 2 cut(s) 242, 245
TfiI GAWTC 2 cut(s) 253, 811
TscAI CASTG 5 cut(s) 199, 469, 481, 592, 616
TseFI GTSAC 2 cut(s) 394, 460
TseI GCWGC 6 cut(s) 199, 409, 590, 622, 632, 635
Tsp45I GTSAC 2 cut(s) 394, 460
TspDTI ATGAA 2 cut(s) 20, 563
TspGWI ACGGA 2 cut(s) 426, 430
TspRI CASTG 5 cut(s) 199, 469, 481, 592, 616
Van91I CCANNNNNTGG 2 cut(s) 476, 910
VpaK11BI GGWCC 2 cut(s) 35, 913
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 570
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.