Prupe.5G028700_v2.0.a1

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3375942 .. 3383759
7818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G028700.2

Sequence Viewer

Length: 1314 bp
ATGATGAGCGCTCAGCCTCAACCGCCGAGTAGTATGATGTCTCAGGCTCAAGGTTATCAGCATCATCATCATCAACCAACTTCAGTGGAAGAGGTCAGAACCCTTTGGATTGGGGATTTACAGTATTGGGTCGACGAAAACTACCTCACTACCTGCTTTGCACACACCGGCGAGGTGATTTCAATAAAGATAATACGTAATAAAATCACTGGCCAGCCAGAGGGTTATGGGTTTGTGGAATTTGTTTCTCATGCTGCAGCGGAAAGGGTTCTGCATGCTTACAATGGGACACTAATGCCTGGAACTGAACAAAATTTTAGATTGAACTGGGCTTCGTTTGGTATTGGGGAAAGACGCCCTGATGCTGGCCCTGAGCACTCTATTTTCGTAGGGGATTTAGCCCCTGATGTTACAGATTTTATGCTGCAAGAAACCTTTCGAACTCAATATTCTTCGGTTAGAGGTGCCAAGGTTGTGACTGATCCAAACACTGGACGCTCAAAGGGATATGGGTTTGTCAAGTTTGCAGATGAGACAGAAAGGAACCGTGCTATGACAGAAATGAATGGTGTTTATTGCTCAACTAGGCAGATGCGTATCAGTGCTGCAACACCAAAGAAAACCACCGGTTTTCAGCAGCAATATGGTGCAACAAAAGCAGTATATCCTAATCCAGCATACACTACGCCAGCAGTTCCCGTGCTTCCAGCAGATTATGATGCAAACAACACTACAATTTTTGTTGGTAACTTGGATCCTAATGTCACGGAGGAGGAACTGAAGCAAAGTTTTATGCAGTTTGGAGAAATTCCCTATGTCAAGATTCCTGTGGGCAAAGGATGTGGTTTTGTACAGTTTGGGACAAGGGCATCTGCTGAAGAAGCTATCCAAAGGATGCAGGGAATGATGATTGGTCAACAAGTAGTCCGCATTTCTTGGGGCAGGAGCCCAACAGCTAAACAGGATGTACCTGGTAGCTTTGCTCAGCAAGTAGATCCAAGCCAATGGGCTGCATATTATGGTTATGGACAAGGCTACGATGCCTATGCTTATGGGGCTACCCAGGATCCATCATTATATGCATACGGTGCATATGCTGGTTATGGCCAATATCCTCAACAGGTTGAAGGAGTTCAAGATCTTGCAGCTATGGGAGGTACTGTACCCTCCGTGGAACAGAGGGAGGAGTTGGATGATCCCTTGGCTACACCCGATGTTGATAAGTTAAATGCAGCTTACCTCTCCGTTCATGGACGGGCCATCTTAGGCCGTCCGATGTGGCTGAGAACATCATCCTTTACTCAGCAAGCTTAG

Protein Analysis

438

Amino Acids

48.32

Weight (kDa)

5.44

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 491
AccI GTMKAC 1 cut(s) 132
AciI CCGC 3 cut(s) 23, 260, 928
AclWI GGATC 7 cut(s) 476, 749, 762, 989, 1061, 1074, 1190
AcoI YGGCCR 2 cut(s) 211, 1105
AcsI RAATTY 3 cut(s) 239, 313, 807
AcuI CTGAAG 3 cut(s) 66, 800, 897
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 4 cut(s) 852, 969, 1159, 1164
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 220, 365, 491
AgeI ACCGGT 1 cut(s) 626
AgsI TTSAA 4 cut(s) 183, 325, 1127, 1136
AjnI CCWGG 3 cut(s) 298, 970, 1062
AluBI AGCT 6 cut(s) 884, 956, 978, 1148, 1235, 1310
AluI AGCT 6 cut(s) 884, 956, 978, 1148, 1235, 1310
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 45, 527
AlwI GGATC 7 cut(s) 476, 749, 762, 989, 1061, 1074, 1190
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 5 cut(s) 211, 367, 1105, 1257, 1267
ApeKI GCWGC 8 cut(s) 254, 257, 424, 605, 637, 1010, 1145, 1232
ApoI RAATTY 3 cut(s) 239, 313, 807
AsiGI ACCGGT 1 cut(s) 626
Asp700I GAANNNNTTC 3 cut(s) 267, 435, 1131
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 368, 1257
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 439
BalI TGGCCA 2 cut(s) 213, 1107
BamHI GGATCC 2 cut(s) 754, 1066
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 950
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 8 cut(s) 241, 269, 411, 592, 649, 997, 1157, 1244
BccI CCATC 2 cut(s) 1078, 1268
BceAI ACGGC 1 cut(s) 1254
BcgI CGANNNNNNTGC 2 cut(s) 1028, 1062
BciT130I CCWGG 3 cut(s) 300, 972, 1064
BcoDI GTCTC 2 cut(s) 45, 527
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 1138
BisI GCNGC 8 cut(s) 255, 258, 425, 606, 638, 1011, 1146, 1233
BlpI GCTNAGC 2 cut(s) 12, 984
BlsI GCNGC 8 cut(s) 256, 259, 426, 607, 639, 1012, 1147, 1234
Bme1390I CCNGG 3 cut(s) 300, 972, 1064
BmgT120I GGNCC 2 cut(s) 368, 1257
BmiI GGNNCC 5 cut(s) 466, 545, 756, 947, 1068
BmrFI CCNGG 3 cut(s) 300, 972, 1064
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 7 cut(s) 70, 352, 582, 709, 878, 885, 1030
BmuI ACTGGG 1 cut(s) 337
Bpu10I CCTNAGC 1 cut(s) 372
Bpu1102I GCTNAGC 2 cut(s) 12, 984
Bpu14I TTCGAA 1 cut(s) 439
BpuEI CTTGAG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 4 cut(s) 468, 1062, 1170, 1200
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 1146, 1176
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 365, 491
Bse118I RCCGGY 2 cut(s) 167, 626
Bse1I ACTGG 3 cut(s) 214, 332, 496
Bse8I GATNNNNATC 1 cut(s) 596
BseBI CCWGG 3 cut(s) 300, 972, 1064
BseDI CCNNGG 4 cut(s) 468, 1062, 1170, 1200
BseGI GGATG 5 cut(s) 845, 900, 970, 1198, 1292
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 3 cut(s) 220, 365, 491
BseMII CTCAG 5 cut(s) 26, 56, 363, 998, 1274
BseNI ACTGG 3 cut(s) 214, 332, 496
BseRI GAGGAG 2 cut(s) 785, 1199
BseXI GCAGC 8 cut(s) 241, 269, 411, 592, 649, 997, 1157, 1244
BshFI GGCC 5 cut(s) 213, 369, 1107, 1259, 1269
BshNI GGYRCC 1 cut(s) 464
BshTI ACCGGT 1 cut(s) 626
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 2 cut(s) 168, 627
BslFI GGGAC 2 cut(s) 301, 874
BslI CCNNNNNNNGG 3 cut(s) 220, 365, 491
BsmAI GTCTC 2 cut(s) 45, 527
BsmFI GGGAC 2 cut(s) 301, 874
BsnI GGCC 5 cut(s) 213, 369, 1107, 1259, 1269
Bsp119I TTCGAA 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 378, 950
Bsp1407I TGTACA 1 cut(s) 850
Bsp143I GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
Bsp1720I GCTNAGC 2 cut(s) 12, 984
BspACI CCGC 3 cut(s) 23, 260, 928
BspANI GGCC 5 cut(s) 213, 369, 1107, 1259, 1269
BspCNI CTCAG 5 cut(s) 25, 55, 364, 997, 1275
BspLI GGNNCC 5 cut(s) 466, 545, 756, 947, 1068
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 7 cut(s) 476, 749, 762, 989, 1061, 1074, 1190
BspT104I TTCGAA 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 464
BsrFI RCCGGY 2 cut(s) 167, 626
BsrGI TGTACA 1 cut(s) 850
BsrI ACTGG 3 cut(s) 214, 332, 496
BssAI RCCGGY 2 cut(s) 167, 626
BssECI CCNNGG 4 cut(s) 468, 1062, 1170, 1200
BssMI GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 468, 1200
Bst2UI CCWGG 3 cut(s) 300, 972, 1064
Bst4CI ACNGT 5 cut(s) 123, 548, 855, 1088, 1162
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 355
BstAPI GCANNNNNTGC 1 cut(s) 1088
BstAUI TGTACA 1 cut(s) 850
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 439
BstC8I GCNNGC 5 cut(s) 215, 276, 367, 690, 1308
BstDEI CTNAG 8 cut(s) 12, 42, 372, 984, 1264, 1283, 1302, 1311
BstDSI CCRYGG 1 cut(s) 1170
BstF5I GGATG 5 cut(s) 845, 900, 970, 1198, 1292
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 6 cut(s) 484, 757, 997, 1069, 1141, 1198
BstMAI GTCTC 2 cut(s) 45, 527
BstMBI GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
BstMWI GCNNNNNNNGC 5 cut(s) 22, 656, 881, 1055, 1088
BstNI CCWGG 3 cut(s) 300, 972, 1064
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 298, 970, 1062
BstSFI CTRYAG 1 cut(s) 255
BstSNI TACGTA 1 cut(s) 197
BstV1I GCAGC 8 cut(s) 241, 269, 411, 592, 649, 997, 1157, 1244
BstX2I RGATCY 4 cut(s) 754, 994, 1066, 1138
BstXI CCANNNNNNTGG 1 cut(s) 1005
BstYI RGATCY 4 cut(s) 754, 994, 1066, 1138
BsuRI GGCC 5 cut(s) 213, 369, 1107, 1259, 1269
BtgI CCRYGG 1 cut(s) 1170
BtsCI GGATG 5 cut(s) 845, 900, 970, 1198, 1292
BtsIMutI CAGTG 4 cut(s) 90, 207, 489, 607
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 5 cut(s) 215, 276, 367, 690, 1308
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 167, 626
Cfr13I GGNCC 2 cut(s) 368, 1257
CseI GACGC 2 cut(s) 363, 504
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 4 cut(s) 851, 968, 1158, 1163
CspAI ACCGGT 1 cut(s) 626
CspCI CAANNNNNGTGG 4 cut(s) 66, 101, 823, 858
CviAII CATG 3 cut(s) 251, 275, 1250
CviQI GTAC 4 cut(s) 851, 968, 1158, 1163
DdeI CTNAG 8 cut(s) 12, 42, 372, 984, 1264, 1283, 1302, 1311
DpnI GATC 6 cut(s) 483, 756, 996, 1068, 1140, 1197
DpnII GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
EaeI YGGCCR 2 cut(s) 211, 1105
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco105I TACGTA 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 468, 1200
Eco24I GRGCYC 1 cut(s) 950
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 66, 800, 897
EcoRII CCWGG 3 cut(s) 298, 970, 1062
EcoT14I CCWWGG 2 cut(s) 468, 1200
EcoT22I ATGCAT 1 cut(s) 1084
EcoT38I GRGCYC 1 cut(s) 950
ErhI CCWWGG 2 cut(s) 468, 1200
FaeI CATG 3 cut(s) 254, 278, 1253
FaqI GGGAC 2 cut(s) 301, 874
FatI CATG 3 cut(s) 250, 274, 1249
FauNDI CATATG 1 cut(s) 1093
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 8 cut(s) 255, 258, 425, 606, 638, 1011, 1146, 1233
FokI GGATG 5 cut(s) 852, 907, 977, 1205, 1279
FriOI GRGCYC 1 cut(s) 950
Fsp4HI GCNGC 8 cut(s) 255, 258, 425, 606, 638, 1011, 1146, 1233
FspBI CTAG 1 cut(s) 585
GlaI GCGC 1 cut(s) 10
GluI GCNGC 8 cut(s) 255, 258, 425, 606, 638, 1011, 1146, 1233
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 213, 369, 1107, 1259, 1269
HapII CCGG 2 cut(s) 168, 627
HgaI GACGC 2 cut(s) 363, 504
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 3 cut(s) 254, 278, 1253
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 2 cut(s) 133, 917
HindII GTYRAC 2 cut(s) 133, 917
HindIII AAGCTT 1 cut(s) 1308
HinfI GANTC 1 cut(s) 823
HpaII CCGG 2 cut(s) 168, 627
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 133, 917
Hpy188I TCNGA 2 cut(s) 98, 1275
Hpy188III TCNNGA 2 cut(s) 820, 1136
Hpy8I GTNNAC 2 cut(s) 133, 917
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 1121
HpyCH4III ACNGT 5 cut(s) 123, 548, 855, 1088, 1162
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 656, 881, 1055, 1088
HpyF3I CTNAG 8 cut(s) 12, 42, 372, 984, 1264, 1283, 1302, 1311
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 3 cut(s) 254, 278, 1253
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
LmnI GCTCC 1 cut(s) 945
Lsp1109I GCAGC 8 cut(s) 241, 269, 411, 592, 649, 997, 1157, 1244
LweI GCATC 7 cut(s) 70, 352, 582, 709, 878, 885, 1030
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 1 cut(s) 585
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 4 cut(s) 409, 475, 746, 763
MalI GATC 6 cut(s) 483, 756, 996, 1068, 1140, 1197
MboI GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
MboII GAAGA 3 cut(s) 101, 444, 890
MflI RGATCY 4 cut(s) 754, 994, 1066, 1138
MhlI GDGCHC 2 cut(s) 378, 950
MlsI TGGCCA 2 cut(s) 213, 1107
MluCI AATT 4 cut(s) 239, 313, 735, 807
MluNI TGGCCA 2 cut(s) 213, 1107
MmeI TCCRAC 1 cut(s) 1170
Mox20I TGGCCA 2 cut(s) 213, 1107
Mph1103I ATGCAT 1 cut(s) 1084
MroXI GAANNNNTTC 3 cut(s) 267, 435, 1131
MscI TGGCCA 2 cut(s) 213, 1107
MseI TTAA 1 cut(s) 1226
Msp20I TGGCCA 2 cut(s) 213, 1107
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 168, 627
MspR9I CCNGG 3 cut(s) 300, 972, 1064
MvaI CCWGG 3 cut(s) 300, 972, 1064
MwoI GCNNNNNNNGC 5 cut(s) 22, 656, 881, 1055, 1088
NdeI CATATG 1 cut(s) 1093
NdeII GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
NlaIII CATG 3 cut(s) 254, 278, 1253
NlaIV GGNNCC 5 cut(s) 466, 545, 756, 947, 1068
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 475, 763
NsiI ATGCAT 1 cut(s) 1084
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 439
PaeI GCATGC 1 cut(s) 278
PdmI GAANNNNTTC 3 cut(s) 267, 435, 1131
PfeI GAWTC 1 cut(s) 823
PflMI CCANNNNNTGG 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 626
PkrI GCNGC 8 cut(s) 256, 259, 426, 607, 639, 1012, 1147, 1234
Ppu21I YACGTR 1 cut(s) 197
Psp6I CCWGG 3 cut(s) 298, 970, 1062
PspGI CCWGG 3 cut(s) 298, 970, 1062
PspN4I GGNNCC 5 cut(s) 466, 545, 756, 947, 1068
PspPI GGNCC 2 cut(s) 368, 1257
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 4 cut(s) 754, 994, 1066, 1138
RsaI GTAC 4 cut(s) 852, 969, 1159, 1164
RsaNI GTAC 4 cut(s) 851, 968, 1158, 1163
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 1226
SatI GCNGC 8 cut(s) 255, 258, 425, 606, 638, 1011, 1146, 1233
Sau3AI GATC 6 cut(s) 481, 754, 994, 1066, 1138, 1195
Sau96I GGNCC 2 cut(s) 368, 1257
ScrFI CCNGG 3 cut(s) 300, 972, 1064
SduI GDGCHC 2 cut(s) 378, 950
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 7 cut(s) 70, 352, 582, 709, 878, 885, 1030
SfcI CTRYAG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 439
SgrAI CRCCGGYG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SnaBI TACGTA 1 cut(s) 197
SphI GCATGC 1 cut(s) 278
Sse9I AATT 4 cut(s) 239, 313, 735, 807
SsiI CCGC 3 cut(s) 23, 260, 928
SspI AATATT 1 cut(s) 449
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 298, 970, 1062
StyI CCWWGG 2 cut(s) 468, 1200
TaaI ACNGT 5 cut(s) 123, 548, 855, 1088, 1162
TaiI ACGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 132, 439
TasI AATT 4 cut(s) 239, 313, 735, 807
TatI WGTACW 1 cut(s) 850
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 1 cut(s) 1226
Tru9I TTAA 1 cut(s) 1226
TscAI CASTG 4 cut(s) 90, 214, 496, 607
TseFI GTSAC 2 cut(s) 475, 763
TseI GCWGC 8 cut(s) 254, 257, 424, 605, 637, 1010, 1145, 1232
Tsp45I GTSAC 2 cut(s) 475, 763
TspDTI ATGAA 2 cut(s) 578, 1238
TspGWI ACGGA 3 cut(s) 782, 1159, 1234
TspRI CASTG 4 cut(s) 90, 214, 496, 607
Van91I CCANNNNNTGG 1 cut(s) 491
XapI RAATTY 3 cut(s) 239, 313, 807
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 3 cut(s) 267, 435, 1131
XspI CTAG 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.