AT5G19750

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006331
Physical Location & Seq
Forward (+)
6677016 .. 6679384
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19750.1

Sequence Viewer

Length: 867 bp
ATGCTTAACTCTATCACTTTAACCCGGAAACCACCACTCCCGTTCAACTCTGTTGGGTTTTCAGGTAATCACTCTTCGTCTTTTGGTCGAAGAACTATAACGGAAGGTAGTTCGAGCAAGGCTCTTTCGTTTGGGTACAAAAATGTTGGTTCACTGAAGTGTGGTCGGAGCAATTGGCCGGGGCGTTCTGGGACTGCGTTTGGGCATCTAGTCCGGGTCTCTGCGGTCCCAGGTGGGAATTCAGGTGGCTCTGGCGGGTTAGGTGGTTCAGGCGGTGGTGGTGGTGGTTCCGGCGGCGGTGGTGGTGATGGAAGCGACGGAAAAGGAAAGAAGTGGTCACTTCTCTCATGGTACCAGGCTCTTCTCTCAAACTCTCCTGTTTTGACCAAAGCTGTGACCGCAGCACTTTTGAACCTCGTTGGAGATTTGATCTGTCAGCTTACTATCAACAAGACCTCATCGCTGGACAAGAAGAGGACACTCACCTTTACCTTCTTGGGCTTAGGGCTAGTCGGTCCAACATTGCATTTCTGGTATTTGTATTTGAGCAAAGTGGTGACAGCTTCTGGATTATCAGGCGCAGTTATACGACTTCTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGGAGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGTCATACCGAAGCTACAACAGGAGTGGACTGGTGCAATGATAGCAAATTGGCAGCTATGGATACCATTTCAGTTTCTTAACTTCAGATTTGTTCCACAGAACTACCAGGTACTTGCTTCAAACGTAGTGGCTTTGGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAAGTTGTTGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

288

Amino Acids

30.37

Weight (kDa)

10.24

Isoelectric Point (pI)

28.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 219 - 278 1.4e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AciI CCGC 6 cut(s) 224, 255, 273, 294, 297, 399
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 176, 745
AfaI GTAC 3 cut(s) 137, 353, 789
AgsI TTSAA 5 cut(s) 46, 412, 662, 798, 838
AjnI CCWGG 3 cut(s) 229, 354, 783
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 6 cut(s) 392, 439, 563, 691, 733, 842
AluI AGCT 6 cut(s) 392, 439, 563, 691, 733, 842
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 566
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 401, 730
ApoI RAATTY 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 2 cut(s) 226, 515
AsuC2I CCSGG 3 cut(s) 25, 180, 215
AsuHPI GGTGA 3 cut(s) 317, 475, 568
AvaII GGWCC 2 cut(s) 226, 515
BanI GGYRCC 1 cut(s) 351
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BbvI GCAGC 2 cut(s) 413, 742
BccI CCATC 2 cut(s) 302, 679
BciT130I CCWGG 3 cut(s) 231, 356, 785
BciVI GTATCC 1 cut(s) 732
BcnI CCSGG 3 cut(s) 25, 180, 215
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 209, 509
BfuI GTATCC 1 cut(s) 732
BisI GCNGC 3 cut(s) 295, 402, 731
BlsI GCNGC 3 cut(s) 296, 403, 732
Bme1390I CCNGG 6 cut(s) 25, 180, 215, 231, 356, 785
Bme18I GGWCC 2 cut(s) 226, 515
BmgT120I GGNCC 2 cut(s) 226, 515
BmiI GGNNCC 3 cut(s) 228, 289, 353
BmrFI CCNGG 6 cut(s) 25, 180, 215, 231, 356, 785
BmsI GCATC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 106, 138
Bpu10I CCTNAGC 1 cut(s) 502
BpuMI CCSGG 3 cut(s) 25, 180, 215
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 179, 229
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse1I ACTGG 2 cut(s) 603, 712
Bse3DI GCAATG 2 cut(s) 521, 720
BseBI CCWGG 3 cut(s) 231, 356, 785
BseDI CCNNGG 2 cut(s) 179, 229
BseMI GCAATG 2 cut(s) 521, 720
BseNI ACTGG 2 cut(s) 603, 712
BseXI GCAGC 2 cut(s) 413, 742
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 351
BsiSI CCGG 4 cut(s) 25, 179, 214, 291
BslFI GGGAC 2 cut(s) 205, 212
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 205, 212
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 429, 601
BspACI CCGC 6 cut(s) 224, 255, 273, 294, 297, 399
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 228, 289, 353
BspPI GGATC 1 cut(s) 609
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 521, 720
BsrI ACTGG 2 cut(s) 603, 712
BssECI CCNNGG 2 cut(s) 179, 229
BssMI GATC 2 cut(s) 429, 601
Bst2UI CCWGG 3 cut(s) 231, 356, 785
Bst6I CTCTTC 3 cut(s) 79, 366, 467
BstDEI CTNAG 1 cut(s) 502
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 2 cut(s) 432, 604
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 429, 601
BstMWI GCNNNNNNNGC 2 cut(s) 398, 719
BstNI CCWGG 3 cut(s) 231, 356, 785
BstSCI CCNGG 6 cut(s) 23, 178, 213, 229, 354, 783
BstV1I GCAGC 2 cut(s) 413, 742
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 2 cut(s) 226, 515
CsiI ACCWGGT 1 cut(s) 783
Csp6I GTAC 3 cut(s) 136, 352, 788
CspCI CAANNNNNGTGG 4 cut(s) 683, 718, 786, 821
CviAII CATG 1 cut(s) 348
CviQI GTAC 3 cut(s) 136, 352, 788
DdeI CTNAG 1 cut(s) 502
DpnI GATC 2 cut(s) 431, 603
DpnII GATC 2 cut(s) 429, 601
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 3 cut(s) 79, 366, 467
EarI CTCTTC 3 cut(s) 79, 366, 467
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 226, 515
Eco57I CTGAAG 2 cut(s) 176, 745
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 229, 354, 783
FaeI CATG 1 cut(s) 351
FaiI YATR 5 cut(s) 98, 349, 587, 683, 736
FaqI GGGAC 2 cut(s) 205, 212
FatI CATG 1 cut(s) 347
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 295, 402, 731
Fsp4HI GCNGC 3 cut(s) 295, 402, 731
FspBI CTAG 2 cut(s) 209, 509
GlaI GCGC 1 cut(s) 580
GluI GCNGC 3 cut(s) 295, 402, 731
HaeIII GGCC 1 cut(s) 178
HapII CCGG 4 cut(s) 25, 179, 214, 291
HhaI GCGC 1 cut(s) 581
Hin1II CATG 1 cut(s) 351
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HpaII CCGG 4 cut(s) 25, 179, 214, 291
HphI GGTGA 3 cut(s) 317, 475, 568
Hpy166II GTNNAC 2 cut(s) 152, 705
Hpy188I TCNGA 2 cut(s) 168, 764
Hpy188III TCNNGA 1 cut(s) 567
Hpy8I GTNNAC 2 cut(s) 152, 705
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 3 cut(s) 98, 502, 656
HpyCH4IV ACGT 1 cut(s) 801
HpyCH4V TGCA 3 cut(s) 526, 713, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 719
HpyF3I CTNAG 1 cut(s) 502
HpySE526I ACGT 1 cut(s) 801
Hsp92II CATG 1 cut(s) 351
HspAI GCGC 1 cut(s) 579
KpnI GGTACC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 429, 601
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 168, 622
Lsp1109I GCAGC 2 cut(s) 413, 742
LweI GCATC 1 cut(s) 214
MabI ACCWGGT 1 cut(s) 783
MaeI CTAG 2 cut(s) 209, 509
MaeII ACGT 1 cut(s) 801
MaeIII GTNAC 4 cut(s) 336, 394, 556, 652
MalI GATC 2 cut(s) 431, 603
MboI GATC 2 cut(s) 429, 601
MboII GAAGA 4 cut(s) 66, 102, 353, 484
MfeI CAATTG 1 cut(s) 172
MluCI AATT 3 cut(s) 172, 238, 724
MmeI TCCRAC 4 cut(s) 146, 400, 542, 610
MnlI CCTC 3 cut(s) 425, 466, 468
MseI TTAA 3 cut(s) 6, 20, 756
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 4 cut(s) 25, 179, 214, 291
MspR9I CCNGG 6 cut(s) 25, 180, 215, 231, 356, 785
MunI CAATTG 1 cut(s) 172
MvaI CCWGG 3 cut(s) 231, 356, 785
MwoI GCNNNNNNNGC 2 cut(s) 398, 719
NciI CCSGG 3 cut(s) 25, 180, 215
NdeII GATC 2 cut(s) 429, 601
NlaIII CATG 1 cut(s) 351
NlaIV GGNNCC 3 cut(s) 228, 289, 353
NmuCI GTSAC 4 cut(s) 336, 394, 556, 652
OliI CACNNNNGTG 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 366
PkrI GCNGC 3 cut(s) 296, 403, 732
Psp6I CCWGG 3 cut(s) 229, 354, 783
PspGI CCWGG 3 cut(s) 229, 354, 783
PspN4I GGNNCC 3 cut(s) 228, 289, 353
PspPI GGNCC 2 cut(s) 226, 515
PstNI CAGNNNCTG 1 cut(s) 566
RsaI GTAC 3 cut(s) 137, 353, 789
RsaNI GTAC 3 cut(s) 136, 352, 788
RseI CAYNNNNRTG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 6, 20, 756
SatI GCNGC 3 cut(s) 295, 402, 731
Sau3AI GATC 2 cut(s) 429, 601
Sau96I GGNCC 2 cut(s) 226, 515
ScrFI CCNGG 6 cut(s) 25, 180, 215, 231, 356, 785
SexAI ACCWGGT 1 cut(s) 783
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 2 cut(s) 226, 515
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 3 cut(s) 172, 238, 724
SsiI CCGC 6 cut(s) 224, 255, 273, 294, 297, 399
SspMI CTAG 2 cut(s) 209, 509
StyD4I CCNGG 6 cut(s) 23, 178, 213, 229, 354, 783
TaiI ACGT 1 cut(s) 804
TaqI TCGA 2 cut(s) 88, 113
TaqII GACCGA 1 cut(s) 503
TasI AATT 3 cut(s) 172, 238, 724
TauI GCSGC 1 cut(s) 297
Tru1I TTAA 3 cut(s) 6, 20, 756
Tru9I TTAA 3 cut(s) 6, 20, 756
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 4 cut(s) 336, 394, 556, 652
TseI GCWGC 2 cut(s) 401, 730
Tsp45I GTSAC 4 cut(s) 336, 394, 556, 652
TspGWI ACGGA 2 cut(s) 116, 333
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 226, 515
XapI RAATTY 1 cut(s) 238
XspI CTAG 2 cut(s) 209, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.