Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006363.1

Orthogroup ID

OG0006331

Physical Location & Seq

Genomic Coordinates Reverse (-)

1447 .. 9729

Gene Structure 8283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006363.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atgtacgagaaccacgaaatcatgtacgcgcaagacaccctgcaccttgagcaagagtcatgttcgggtaccacgagtcatcgggtacatgggtacatgcaggacacccctcaccctcaacctcaccccgcacctcgatcaagggtcatgtacgggtaccatgagccagcgggaggttgttgttcccgtaaacccattttgcattctactacgatctcagcaaatcgaattcagacccgttctcactcgtacgctctgaattccggtaatggaataggattccggcaactgcgttttagtccgaaggcggtttccgatgatgggtccaacggaagtgatggtaattctggtggcggaaacaatcatggcagaggtggaggtggaggtggtggcaagggtgatgatagattccggcaactgcgttttagtccgaaggcggtttccgatgatgggtccaacggaagtgatggtaattctggtggcggaaacaatcatggcagaggtggaggtggaggtggtggcaaaggtgatgatagtaattggtctttcctctcatggtatttggatcttcttgcaaagtatcctgcgtccataaaagctctgacatctgcatttttaaccctcattggagatgttatctgccagcttgttattgatcaagttccatgtcttgacgtgaaaagaacattcttatttaccttgctgggtctggtgttagtaggtccgacgctgcatttctggtatttgtatctaagcaaactggtcacgttgcctggagcatcaggtgcattcatgagccttctacttgatcagtttcttttttctcctatatttattggagttttcttatcggcattgatgacactggagggaagaccttcccaaattgtacccaagctacaacaggagtggttttctgctgtgcttgctaattggcaactgtggatacctttccaatttcttaactttcggtttgtaccacagcaattccaggttcttactgctaatgttattgctttggcatggaatgttatcctctcgtttaaagctcacaaagaggacaagtcagtttgggttgccattcgaaacccagatgttcgagctgccaccacctattcactctgccccattgttgaaattggttgttacacctcatatctagatttacccgtctacttgtcatttagacgattttttacccggcccaataagatctcagcagtccgggcacctgacaatgcaccactggtcgggtttggaccgcctcttcctcatgagttatgtggtggtgatttgggtagatttgcaccggagaaggagtttagaagcaatttccaactcaacaactcgcatgggccgatgtcggaactttcaattccagctctctcctgtgagaaacgaattaggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

470

Amino Acids

51.52

Weight (kDa)

8.77

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19750
fragaria_vesca	FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950
malus_domestica	MD12G1111600.v1.1 MD14G1100800.v1.1
prunus_persica	Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494371
rosa_laevigata	RLG00000022675
rosa_multiflora	Rmu_sc0006363.1_g000001 Rmu_sc0006363.1_g000002
rosa_roxburghii	Rroxscaffold_6G00391140
rosa_rugosa	Rorug03G0264800 Rorug03G0264900
rosa_samantha	Rh3AG315300 Rh3BG350500 Rh3CG347200 Rh3DG349800
rosa_wichuraiana	Rw3G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	68, 156
AccB1I	GGYRCC	3 cut(s)	68, 156, 1228
AccI	GTMKAC	1 cut(s)	1173
AccII	CGCG	1 cut(s)	29
AciI	CCGC	7 cut(s)	129, 170, 308, 354, 437, 483, 1262
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	228, 259
AfiI	CCNNNNNNNGG	4 cut(s)	173, 321, 450, 1250
AgsI	TTSAA	2 cut(s)	1136, 1374
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	772, 990
AluBI	AGCT	6 cut(s)	599, 646, 898, 1049, 1103, 1382
AluI	AGCT	6 cut(s)	599, 646, 898, 1049, 1103, 1382
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	2 cut(s)	1202, 1355
ApeKI	GCWGC	2 cut(s)	730, 1103
ApoI	RAATTY	2 cut(s)	228, 259
Asp700I	GAANNNNTTC	1 cut(s)	877
Asp718I	GGTACC	2 cut(s)	68, 156
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	6 cut(s)	324, 453, 722, 1203, 1259, 1355
AsuC2I	CCSGG	2 cut(s)	1201, 1226
AsuHPI	GGTGA	5 cut(s)	104, 116, 410, 539, 1301
AsuII	TTCGAA	1 cut(s)	1084
AvaII	GGWCC	4 cut(s)	324, 453, 722, 1259
BaeGI	GKGCMC	1 cut(s)	1231
BaeI	ACNNNNGTAYC	2 cut(s)	77, 110
BanI	GGYRCC	3 cut(s)	68, 156, 1228
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	880
BbvI	GCAGC	2 cut(s)	717, 1090
BccI	CCATC	4 cut(s)	314, 332, 443, 461
BciT130I	CCWGG	2 cut(s)	774, 992
BciVI	GTATCC	2 cut(s)	591, 939
BclI	TGATCA	2 cut(s)	655, 808
BcnI	CCSGG	2 cut(s)	1201, 1226
BfaI	CTAG	1 cut(s)	1160
BfuI	GTATCC	2 cut(s)	591, 939
BglII	AGATCT	1 cut(s)	1212
BisI	GCNGC	2 cut(s)	731, 1104
BlsI	GCNGC	2 cut(s)	732, 1105
Bme1390I	CCNGG	4 cut(s)	774, 992, 1201, 1226
Bme18I	GGWCC	4 cut(s)	324, 453, 722, 1259
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	6 cut(s)	324, 453, 722, 1203, 1259, 1355
BmiI	GGNNCC	5 cut(s)	70, 158, 325, 454, 1230
BmrFI	CCNGG	4 cut(s)	774, 992, 1201, 1226
BmsI	GCATC	1 cut(s)	788
BpiI	GAAGAC	1 cut(s)	880
BpmI	CTGGAG	2 cut(s)	795, 887
Bpu14I	TTCGAA	1 cut(s)	1084
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	1201, 1226
BsaWI	WCCGGW	2 cut(s)	263, 1309
BsaXI	ACNNNNNCTCC	2 cut(s)	1304, 1334
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 321, 450, 1250
Bse1I	ACTGG	3 cut(s)	765, 870, 1251
BseBI	CCWGG	2 cut(s)	774, 992
BseLI	CCNNNNNNNGG	4 cut(s)	173, 321, 450, 1250
BseMII	CTCAG	2 cut(s)	231, 1230
BseNI	ACTGG	3 cut(s)	765, 870, 1251
BseSI	GKGCMC	1 cut(s)	1231
BseXI	GCAGC	2 cut(s)	717, 1090
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	1204, 1357
BshNI	GGYRCC	3 cut(s)	68, 156, 1228
BsiSI	CCGG	6 cut(s)	264, 283, 412, 1201, 1225, 1310
BsiWI	CGTACG	1 cut(s)	249
BslI	CCNNNNNNNGG	4 cut(s)	173, 321, 450, 1250
BsmI	GAATGC	2 cut(s)	202, 788
BsnI	GGCC	2 cut(s)	1204, 1357
Bsp119I	TTCGAA	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	1231
Bsp143I	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
BspACI	CCGC	7 cut(s)	129, 170, 308, 354, 437, 483, 1262
BspANI	GGCC	2 cut(s)	1204, 1357
BspCNI	CTCAG	2 cut(s)	230, 1229
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	2 cut(s)	792, 1273
BspLI	GGNNCC	5 cut(s)	70, 158, 325, 454, 1230
BspPI	GGATC	1 cut(s)	573
BspT104I	TTCGAA	1 cut(s)	1084
BspT107I	GGYRCC	3 cut(s)	68, 156, 1228
BsrI	ACTGG	3 cut(s)	765, 870, 1251
BssMI	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	2 cut(s)	774, 992
Bst4CI	ACNGT	1 cut(s)	942
Bst6I	CTCTTC	1 cut(s)	1272
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	1084
BstC8I	GCNNGC	3 cut(s)	168, 644, 927
BstDEI	CTNAG	3 cut(s)	217, 752, 1216
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	6 cut(s)	140, 216, 568, 658, 811, 1215
BstMBI	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 785, 926, 1226
BstNI	CCWGG	2 cut(s)	774, 992
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	4 cut(s)	772, 990, 1199, 1224
BstSLI	GKGCMC	1 cut(s)	1231
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	717, 1090
BstV2I	GAAGAC	1 cut(s)	880
BstX2I	RGATCY	2 cut(s)	565, 1212
BstYI	RGATCY	2 cut(s)	565, 1212
BsuI	GTATCC	2 cut(s)	591, 939
BsuRI	GGCC	2 cut(s)	1204, 1357
BtrI	CACGTC	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	863, 1244
Cac8I	GCNNGC	3 cut(s)	168, 644, 927
CciI	TCATGA	2 cut(s)	792, 1273
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	6 cut(s)	324, 453, 722, 1203, 1259, 1355
CseI	GACGC	2 cut(s)	576, 736
CspCI	CAANNNNNGTGG	2 cut(s)	890, 925
DdeI	CTNAG	3 cut(s)	217, 752, 1216
DpnI	GATC	6 cut(s)	139, 215, 567, 657, 810, 1214
DpnII	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
DraI	TTTAAA	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	1272
EarI	CTCTTC	1 cut(s)	1272
EciI	GGCGGA	2 cut(s)	369, 498
Eco47I	GGWCC	4 cut(s)	324, 453, 722, 1259
EcoRI	GAATTC	2 cut(s)	228, 259
EcoRII	CCWGG	2 cut(s)	772, 990
FauI	CCCGC	2 cut(s)	136, 163
FbaI	TGATCA	2 cut(s)	655, 808
FblI	GTMKAC	1 cut(s)	1173
Fnu4HI	GCNGC	2 cut(s)	731, 1104
Fsp4HI	GCNGC	2 cut(s)	731, 1104
FspBI	CTAG	1 cut(s)	1160
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	2 cut(s)	731, 1104
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	2 cut(s)	795, 887
HaeIII	GGCC	2 cut(s)	1204, 1357
HapII	CCGG	6 cut(s)	264, 283, 412, 1201, 1225, 1310
HgaI	GACGC	2 cut(s)	576, 736
HhaI	GCGC	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	56, 76, 279, 408
HpaII	CCGG	6 cut(s)	264, 283, 412, 1201, 1225, 1310
HphI	GGTGA	5 cut(s)	104, 116, 410, 539, 1301
Hpy166II	GTNNAC	2 cut(s)	191, 1174
Hpy188I	TCNGA	9 cut(s)	234, 258, 303, 316, 432, 445, 603, 726, 1366
Hpy188III	TCNNGA	4 cut(s)	671, 793, 1160, 1274
Hpy8I	GTNNAC	2 cut(s)	191, 1174
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	5 cut(s)	298, 427, 809, 888, 1309
HpyCH4III	ACNGT	1 cut(s)	942
HpyCH4IV	ACGT	2 cut(s)	675, 767
HpyCH4V	TGCA	9 cut(s)	43, 100, 202, 575, 611, 733, 788, 1241, 1307
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 785, 926, 1226
HpyF3I	CTNAG	3 cut(s)	217, 752, 1216
HpySE526I	ACGT	2 cut(s)	675, 767
HspAI	GCGC	1 cut(s)	29
KpnI	GGTACC	2 cut(s)	72, 160
Ksp22I	TGATCA	2 cut(s)	655, 808
Kzo9I	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	2 cut(s)	717, 1090
LweI	GCATC	1 cut(s)	788
MaeI	CTAG	1 cut(s)	1160
MaeII	ACGT	2 cut(s)	675, 767
MaeIII	GTNAC	2 cut(s)	763, 1145
MalI	GATC	6 cut(s)	139, 215, 567, 657, 810, 1214
MboI	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
MboII	GAAGA	3 cut(s)	560, 885, 1259
MflI	RGATCY	2 cut(s)	565, 1212
MhlI	GDGCHC	1 cut(s)	1231
MlyI	GAGTC	2 cut(s)	65, 85
MmeI	TCCRAC	5 cut(s)	351, 480, 749, 1344, 1360
MroXI	GAANNNNTTC	1 cut(s)	877
MseI	TTAA	3 cut(s)	617, 963, 1044
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	6 cut(s)	264, 283, 412, 1201, 1225, 1310
MspR9I	CCNGG	4 cut(s)	774, 992, 1201, 1226
Mva1269I	GAATGC	2 cut(s)	202, 788
MvaI	CCWGG	2 cut(s)	774, 992
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	49, 785, 926, 1226
NciI	CCSGG	2 cut(s)	1201, 1226
NdeII	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
NlaIV	GGNNCC	5 cut(s)	70, 158, 325, 454, 1230
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	1084
PagI	TCATGA	2 cut(s)	792, 1273
PcsI	WCGNNNNNNNCGW	3 cut(s)	12, 71, 1355
PctI	GAATGC	2 cut(s)	202, 788
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	2 cut(s)	279, 408
Pfl23II	CGTACG	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	732, 1105
PleI	GAGTC	2 cut(s)	64, 84
PpsI	GAGTC	2 cut(s)	64, 84
Psp6I	CCWGG	2 cut(s)	772, 990
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	2 cut(s)	772, 990
PspLI	CGTACG	1 cut(s)	249
PspN4I	GGNNCC	5 cut(s)	70, 158, 325, 454, 1230
PspPI	GGNCC	6 cut(s)	324, 453, 722, 1203, 1259, 1355
PsuI	RGATCY	2 cut(s)	565, 1212
SaqAI	TTAA	3 cut(s)	617, 963, 1044
SatI	GCNGC	2 cut(s)	731, 1104
Sau3AI	GATC	6 cut(s)	137, 213, 565, 655, 808, 1212
Sau96I	GGNCC	6 cut(s)	324, 453, 722, 1203, 1259, 1355
SchI	GAGTC	2 cut(s)	65, 85
ScrFI	CCNGG	4 cut(s)	774, 992, 1201, 1226
SduI	GDGCHC	1 cut(s)	1231
SfaNI	GCATC	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	1084
SinI	GGWCC	4 cut(s)	324, 453, 722, 1259
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	7 cut(s)	129, 170, 308, 354, 437, 483, 1262
SspMI	CTAG	1 cut(s)	1160
StyD4I	CCNGG	4 cut(s)	772, 990, 1199, 1224
TaaI	ACNGT	1 cut(s)	942
TaiI	ACGT	2 cut(s)	678, 770
TaqI	TCGA	4 cut(s)	136, 226, 1084, 1099
TfiI	GAWTC	2 cut(s)	279, 408
Tru1I	TTAA	3 cut(s)	617, 963, 1044
Tru9I	TTAA	3 cut(s)	617, 963, 1044
TscAI	CASTG	2 cut(s)	870, 1251
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	2 cut(s)	730, 1103
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	1 cut(s)	781
TspGWI	ACGGA	2 cut(s)	345, 474
TspRI	CASTG	2 cut(s)	870, 1251
VpaK11BI	GGWCC	4 cut(s)	324, 453, 722, 1259
XapI	RAATTY	2 cut(s)	228, 259
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	877
XspI	CTAG	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.