Rh3BG350500

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006331
Physical Location & Seq
Reverse (-)
40762180 .. 40766684
4505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG350500.1

Sequence Viewer

Length: 849 bp
ATGACAATGACTCCAAACCTTGTATCACTCACTCGTACATCCCCATTCTTAAATCCTTTTGTAGGAGGATGTTGTTCCCGTAAACCCATTTTGCATTCTACTACGATTTCAGCAAATCGAATTCAGACCCGTTCTCACTCGGACGCTCTGAATTCCGGTAATGGAATAGGATTCCGACAACTACGTTTTAGTCCGAAGGCGGTTTCAGATGATGGGTCCAACGGAAGCGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGGTGAAGGTGAAGGTGGTGGCAAAGGTGATGATAGCAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCAAAGTATCCTGCGTCGATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACATTGCCTGGAGCATCAGGTGCATTCATGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTATATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTCCAGGTTCTTACTGCTAATGTTATTGCTTTGGCATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

282

Amino Acids

30.79

Weight (kDa)

9.12

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 213 - 272 1.5e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 200, 246
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 2 cut(s) 120, 151
AfaI GTAC 3 cut(s) 37, 666, 753
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 842
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 547, 765
AluBI AGCT 4 cut(s) 374, 421, 673, 824
AluI AGCT 4 cut(s) 374, 421, 673, 824
AlwI GGATC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 2 cut(s) 120, 151
Asp700I GAANNNNTTC 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 216, 497
AsuHPI GGTGA 3 cut(s) 290, 296, 314
AvaII GGWCC 2 cut(s) 216, 497
BbsI GAAGAC 1 cut(s) 655
BbvI GCAGC 1 cut(s) 492
BccI CCATC 2 cut(s) 206, 224
BciT130I CCWGG 2 cut(s) 549, 767
BciVI GTATCC 2 cut(s) 366, 714
BclI TGATCA 2 cut(s) 430, 583
BfuI GTATCC 2 cut(s) 366, 714
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 549, 767
Bme18I GGWCC 2 cut(s) 216, 497
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 216, 497
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 549, 767
BmsI GCATC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 2 cut(s) 570, 662
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 540, 645
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 2 cut(s) 549, 767
BseGI GGATG 2 cut(s) 38, 74
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 542
BseNI ACTGG 2 cut(s) 540, 645
BseXI GCAGC 1 cut(s) 492
BseYI CCCAGC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 62
BsmI GAATGC 2 cut(s) 94, 563
Bsp143I GATC 3 cut(s) 340, 430, 583
BspACI CCGC 2 cut(s) 200, 246
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 542
BsrI ACTGG 2 cut(s) 540, 645
BssMI GATC 3 cut(s) 340, 430, 583
Bst2UI CCWGG 2 cut(s) 549, 767
Bst4CI ACNGT 1 cut(s) 717
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 419, 702
BstDEI CTNAG 1 cut(s) 527
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 38, 74
BstKTI GATC 3 cut(s) 343, 433, 586
BstMBI GATC 3 cut(s) 340, 430, 583
BstMWI GCNNNNNNNGC 2 cut(s) 560, 701
BstNI CCWGG 2 cut(s) 549, 767
BstSCI CCNGG 2 cut(s) 547, 765
BstV1I GCAGC 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 2 cut(s) 366, 714
BtgZI GCGATG 1 cut(s) 243
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 38, 74
BtsIMutI CAGTG 1 cut(s) 638
Cac8I GCNNGC 2 cut(s) 419, 702
CciI TCATGA 1 cut(s) 567
Cfr13I GGNCC 2 cut(s) 216, 497
CseI GACGC 3 cut(s) 152, 351, 511
Csp6I GTAC 3 cut(s) 36, 665, 752
CspCI CAANNNNNGTGG 2 cut(s) 665, 700
CviAII CATG 5 cut(s) 257, 330, 441, 568, 798
CviJI RGCY 5 cut(s) 374, 421, 573, 673, 824
CviKI_1 RGCY 5 cut(s) 374, 421, 573, 673, 824
CviQI GTAC 3 cut(s) 36, 665, 752
DdeI CTNAG 1 cut(s) 527
DpnI GATC 3 cut(s) 342, 432, 585
DpnII GATC 3 cut(s) 340, 430, 583
DraI TTTAAA 1 cut(s) 820
EciI GGCGGA 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 216, 497
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRI GAATTC 2 cut(s) 120, 151
EcoRII CCWGG 2 cut(s) 547, 765
FaeI CATG 5 cut(s) 260, 333, 444, 571, 801
FaiI YATR 6 cut(s) 258, 331, 442, 569, 605, 799
FalI AAGNNNNNCTT 1 cut(s) 822
FatI CATG 5 cut(s) 256, 329, 440, 567, 797
FbaI TGATCA 2 cut(s) 430, 583
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 2 cut(s) 25, 81
Fsp4HI GCNGC 1 cut(s) 506
GluI GCNGC 1 cut(s) 506
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 570, 662
HapII CCGG 1 cut(s) 156
HgaI GACGC 3 cut(s) 152, 351, 511
Hin1II CATG 5 cut(s) 260, 333, 444, 571, 801
HinfI GANTC 2 cut(s) 10, 171
HpaII CCGG 1 cut(s) 156
HphI GGTGA 3 cut(s) 290, 296, 314
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 8 cut(s) 126, 142, 150, 176, 195, 208, 378, 501
Hpy188III TCNNGA 2 cut(s) 446, 568
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 2 cut(s) 367, 505
HpyAV CCTTC 5 cut(s) 190, 275, 281, 584, 663
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 2 cut(s) 184, 450
HpyCH4V TGCA 5 cut(s) 94, 350, 386, 508, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 701
HpyF3I CTNAG 1 cut(s) 527
HpySE526I ACGT 2 cut(s) 184, 450
Hsp92II CATG 5 cut(s) 260, 333, 444, 571, 801
Ksp22I TGATCA 2 cut(s) 430, 583
Kzo9I GATC 3 cut(s) 340, 430, 583
LmnI GCTCC 1 cut(s) 551
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 1 cut(s) 563
MaeII ACGT 2 cut(s) 184, 450
MaeIII GTNAC 1 cut(s) 538
MalI GATC 3 cut(s) 342, 432, 585
MboI GATC 3 cut(s) 340, 430, 583
MboII GAAGA 3 cut(s) 335, 660, 830
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 340
MluCI AATT 8 cut(s) 120, 151, 235, 313, 660, 706, 731, 761
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 3 cut(s) 199, 243, 524
MnlI CCTC 9 cut(s) 59, 257, 263, 269, 335, 407, 637, 821, 826
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 4 cut(s) 50, 392, 738, 819
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 549, 767
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 2 cut(s) 94, 563
MvaI CCWGG 2 cut(s) 549, 767
MwoI GCNNNNNNNGC 2 cut(s) 560, 701
NdeII GATC 3 cut(s) 340, 430, 583
NlaIII CATG 5 cut(s) 260, 333, 444, 571, 801
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 538
PagI TCATGA 1 cut(s) 567
PctI GAATGC 2 cut(s) 94, 563
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 547, 765
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 2 cut(s) 547, 765
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 216, 497
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 3 cut(s) 37, 666, 753
RsaNI GTAC 3 cut(s) 36, 665, 752
SaqAI TTAA 4 cut(s) 50, 392, 738, 819
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 3 cut(s) 340, 430, 583
Sau96I GGNCC 2 cut(s) 216, 497
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 549, 767
SfaNI GCATC 1 cut(s) 563
SinI GGWCC 2 cut(s) 216, 497
Sse9I AATT 8 cut(s) 120, 151, 235, 313, 660, 706, 731, 761
SsiI CCGC 2 cut(s) 200, 246
StyD4I CCNGG 2 cut(s) 547, 765
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 2 cut(s) 187, 453
TaqI TCGA 2 cut(s) 118, 365
TasI AATT 8 cut(s) 120, 151, 235, 313, 660, 706, 731, 761
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 50, 392, 738, 819
Tru9I TTAA 4 cut(s) 50, 392, 738, 819
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 645
VpaK11BI GGWCC 2 cut(s) 216, 497
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 2 cut(s) 120, 151
XmnI GAANNNNTTC 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.