MD14G1100800.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0006331
Physical Location & Seq
Forward (+)
15563043 .. 15568227
5185 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1100800.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCTCTAAACCCTGCATCCTTCTCACTCACTCGTAAAATCCCGTTCCTAAACCGGTTCGTTGGTTGTTCTCGTAGACCCTCTTTGCATTCTTGTACTGTGTCTAGGATTGCAGCAAATCCAGTTCAAATAAGGGGCTTTAGGAGATCTTCTATGTGCCAGTCCCACTCATTTGCCCTGAATTCCGGCATTGAAGTCGGGCTTAAGGACTTGGGTCGTTCTGAAATAGGTTTTAGGCAACTGGGTTATGACCGGTTTCGTCTCTCGGTTGTTTCCGATAGTGGGTCGGGTGGAACTGGTGGAGGCGGCAGCTCTGGTGATGGAAACTATGGCGGCGGAGGTGACGGCGGTGCAAACAGTGAAGGCGGTGGTCGTGATGAAAACAATTGGTCATTGCTTTCGTGGTATTTGGATCTTCTTGCAAAGTATCCTGTTGCAACAAAAGCTCTGACATCTGCCCTTTTAACTCTTACTGGGGATATAGTCTGCCAGCTTGTCATTGATAAAGCTCCGTACCTGGACCTGAAAAGAACGTTCTTGTTTACCCTGTTGGGGCTGGTGTTAGTAGGTCCGACATTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTAACGATGCCTGGAGCATCAGGTGCATTCCTGCGTCTCGTACTTGATCAGTTTCTTTTTGCTCCTATATTCATTGGAGTTTTCTTATCAACATTGATGACGCTGGAGGGAAAACGTTCACAAGTTGTACCCAAGCTTCAACAGGAGTGGTTTTCTGCTGTGCTAGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTCCCACAGCAATTCCAGGTCCTTACTGCTAACTTTATATCTTTGACATGGAATGTTATCCTATCATTCAAAGCTCACAAAGAGGTCTCAAGAGAGATCACACGAGGAGTACGCAAAGTTCATCGAACCTTGCTAAATTCATTGGTTTATGGGCAGCGTGTTTGGTTTATTGTTCATATATTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

337

Amino Acids

37.27

Weight (kDa)

10.01

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 237 - 296 9.6e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 76
AciI CCGC 5 cut(s) 306, 333, 336, 348, 366
AclI AACGTT 2 cut(s) 533, 724
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 2 cut(s) 181, 958
AfaI GTAC 5 cut(s) 97, 515, 651, 738, 933
AfiI CCNNNNNNNGG 2 cut(s) 282, 552
AflII CTTAAG 1 cut(s) 203
AgeI ACCGGT 2 cut(s) 54, 252
AgsI TTSAA 4 cut(s) 128, 194, 749, 892
AjnI CCWGG 3 cut(s) 516, 619, 837
AluBI AGCT 7 cut(s) 312, 446, 493, 509, 745, 776, 896
AluI AGCT 7 cut(s) 312, 446, 493, 509, 745, 776, 896
Alw26I GTCTC 3 cut(s) 266, 650, 913
AlwI GGATC 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 113, 309, 976
ApoI RAATTY 2 cut(s) 181, 958
AsiGI ACCGGT 2 cut(s) 54, 252
Asp700I GAANNNNTTC 1 cut(s) 724
AspS9I GGNCC 3 cut(s) 520, 569, 841
AsuHPI GGTGA 2 cut(s) 329, 353
AsuNHI GCTAGC 1 cut(s) 772
AvaII GGWCC 3 cut(s) 520, 569, 841
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BauI CACGAG 1 cut(s) 924
BbvI GCAGC 3 cut(s) 125, 321, 988
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 3 cut(s) 518, 621, 839
BciVI GTATCC 2 cut(s) 438, 786
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 266, 650, 913
BfaI CTAG 2 cut(s) 105, 773
BfrI CTTAAG 1 cut(s) 203
BfuI GTATCC 2 cut(s) 438, 786
BglII AGATCT 1 cut(s) 146
BisI GCNGC 5 cut(s) 114, 307, 310, 334, 977
BlsI GCNGC 5 cut(s) 115, 308, 311, 335, 978
Bme1390I CCNGG 3 cut(s) 518, 621, 839
Bme18I GGWCC 3 cut(s) 520, 569, 841
BmgT120I GGNCC 3 cut(s) 520, 569, 841
BmrFI CCNGG 3 cut(s) 518, 621, 839
BmrI ACTGGG 2 cut(s) 251, 483
BmsI GCATC 3 cut(s) 26, 606, 635
BmtI GCTAGC 1 cut(s) 776
BmuI ACTGGG 2 cut(s) 251, 483
BoxI GACNNNNGTC 1 cut(s) 213
BpmI CTGGAG 2 cut(s) 642, 734
BpuEI CTTGAG 1 cut(s) 895
BsaI GGTCTC 1 cut(s) 913
BsaWI WCCGGW 2 cut(s) 54, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 552
Bse118I RCCGGY 2 cut(s) 54, 252
Bse1I ACTGG 6 cut(s) 122, 160, 246, 301, 478, 612
Bse3DI GCAATG 2 cut(s) 392, 575
BseBI CCWGG 3 cut(s) 518, 621, 839
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 282, 552
BseMI GCAATG 2 cut(s) 392, 575
BseNI ACTGG 6 cut(s) 122, 160, 246, 301, 478, 612
BseRI GAGGAG 1 cut(s) 942
BseXI GCAGC 3 cut(s) 125, 321, 988
BshTI ACCGGT 2 cut(s) 54, 252
BsiSI CCGG 3 cut(s) 55, 186, 253
BslFI GGGAC 2 cut(s) 148, 809
BslI CCNNNNNNNGG 2 cut(s) 282, 552
BsmAI GTCTC 3 cut(s) 266, 650, 913
BsmBI CGTCTC 2 cut(s) 266, 650
BsmFI GGGAC 2 cut(s) 148, 809
BsmI GAATGC 2 cut(s) 88, 635
Bso31I GGTCTC 1 cut(s) 913
Bsp143I GATC 4 cut(s) 146, 412, 655, 918
BspACI CCGC 5 cut(s) 306, 333, 336, 348, 366
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 1 cut(s) 420
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 913
BsrDI GCAATG 2 cut(s) 392, 575
BsrFI RCCGGY 2 cut(s) 54, 252
BsrI ACTGG 6 cut(s) 122, 160, 246, 301, 478, 612
BssAI RCCGGY 2 cut(s) 54, 252
BssMI GATC 4 cut(s) 146, 412, 655, 918
BssSI CACGAG 1 cut(s) 924
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 3 cut(s) 518, 621, 839
Bst4CI ACNGT 3 cut(s) 100, 359, 789
BstAFI CTTAAG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 491, 774
BstDEI CTNAG 1 cut(s) 599
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 4 cut(s) 149, 415, 658, 921
BstMAI GTCTC 3 cut(s) 266, 650, 913
BstMBI GATC 4 cut(s) 146, 412, 655, 918
BstMWI GCNNNNNNNGC 3 cut(s) 443, 632, 773
BstNI CCWGG 3 cut(s) 518, 621, 839
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 516, 619, 837
BstV1I GCAGC 3 cut(s) 125, 321, 988
BstX2I RGATCY 2 cut(s) 146, 412
BstYI RGATCY 2 cut(s) 146, 412
BsuI GTATCC 2 cut(s) 438, 786
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 491, 774
Cfr10I RCCGGY 2 cut(s) 54, 252
Cfr13I GGNCC 3 cut(s) 520, 569, 841
CseI GACGC 2 cut(s) 632, 718
Csp6I GTAC 5 cut(s) 96, 514, 650, 737, 932
CspAI ACCGGT 2 cut(s) 54, 252
CspCI CAANNNNNGTGG 2 cut(s) 737, 772
CviAII CATG 1 cut(s) 870
CviQI GTAC 5 cut(s) 96, 514, 650, 737, 932
DdeI CTNAG 1 cut(s) 599
DpnI GATC 4 cut(s) 148, 414, 657, 920
DpnII GATC 4 cut(s) 146, 412, 655, 918
EciI GGCGGA 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 3 cut(s) 520, 569, 841
EcoO109I RGGNCCY 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 516, 619, 837
Esp3I CGTCTC 2 cut(s) 266, 650
FaeI CATG 1 cut(s) 873
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 2 cut(s) 148, 809
FatI CATG 1 cut(s) 869
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 5 cut(s) 114, 307, 310, 334, 977
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 5 cut(s) 114, 307, 310, 334, 977
FspBI CTAG 2 cut(s) 105, 773
GluI GCNGC 5 cut(s) 114, 307, 310, 334, 977
GsuI CTGGAG 2 cut(s) 642, 734
HapII CCGG 3 cut(s) 55, 186, 253
HgaI GACGC 2 cut(s) 632, 718
Hin1II CATG 1 cut(s) 873
HindIII AAGCTT 1 cut(s) 743
HpaII CCGG 3 cut(s) 55, 186, 253
HphI GGTGA 2 cut(s) 329, 353
Hpy166II GTNNAC 3 cut(s) 77, 543, 728
Hpy188I TCNGA 4 cut(s) 223, 277, 450, 573
Hpy188III TCNNGA 2 cut(s) 374, 912
Hpy8I GTNNAC 3 cut(s) 77, 543, 728
HpyAV CCTTC 2 cut(s) 31, 356
HpyCH4III ACNGT 3 cut(s) 100, 359, 789
HpyCH4IV ACGT 2 cut(s) 533, 724
HpyCH4V TGCA 8 cut(s) 17, 88, 113, 353, 422, 437, 580, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 632, 773
HpyF3I CTNAG 1 cut(s) 599
HpySE526I ACGT 2 cut(s) 533, 724
Hsp92II CATG 1 cut(s) 873
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 4 cut(s) 146, 412, 655, 918
LmnI GCTCC 3 cut(s) 514, 623, 676
Lsp1109I GCAGC 3 cut(s) 125, 321, 988
LweI GCATC 3 cut(s) 26, 606, 635
MaeI CTAG 2 cut(s) 105, 773
MaeII ACGT 2 cut(s) 533, 724
MaeIII GTNAC 2 cut(s) 341, 610
MalI GATC 4 cut(s) 148, 414, 657, 920
MboI GATC 4 cut(s) 146, 412, 655, 918
MboII GAAGA 2 cut(s) 141, 407
MfeI CAATTG 1 cut(s) 385
MflI RGATCY 2 cut(s) 146, 412
MluCI AATT 6 cut(s) 181, 385, 778, 803, 833, 958
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 6 cut(s) 91, 296, 332, 709, 898, 920
MroXI GAANNNNTTC 1 cut(s) 724
MseI TTAA 3 cut(s) 204, 464, 810
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 3 cut(s) 55, 186, 253
MspR9I CCNGG 3 cut(s) 518, 621, 839
MunI CAATTG 1 cut(s) 385
Mva1269I GAATGC 2 cut(s) 88, 635
MvaI CCWGG 3 cut(s) 518, 621, 839
MwoI GCNNNNNNNGC 3 cut(s) 443, 632, 773
NdeII GATC 4 cut(s) 146, 412, 655, 918
NheI GCTAGC 1 cut(s) 772
NlaIII CATG 1 cut(s) 873
NmuCI GTSAC 1 cut(s) 341
PctI GAATGC 2 cut(s) 88, 635
PdmI GAANNNNTTC 1 cut(s) 724
PinAI ACCGGT 2 cut(s) 54, 252
PkrI GCNGC 5 cut(s) 115, 308, 311, 335, 978
PpuMI RGGWCCY 1 cut(s) 841
PshAI GACNNNNGTC 1 cut(s) 213
Psp1406I AACGTT 2 cut(s) 533, 724
Psp5II RGGWCCY 1 cut(s) 841
Psp6I CCWGG 3 cut(s) 516, 619, 837
PspGI CCWGG 3 cut(s) 516, 619, 837
PspPI GGNCC 3 cut(s) 520, 569, 841
PspPPI RGGWCCY 1 cut(s) 841
PsrI GAACNNNNNNTAC 2 cut(s) 924, 956
PsuI RGATCY 2 cut(s) 146, 412
RsaI GTAC 5 cut(s) 97, 515, 651, 738, 933
RsaNI GTAC 5 cut(s) 96, 514, 650, 737, 932
SaqAI TTAA 3 cut(s) 204, 464, 810
SatI GCNGC 5 cut(s) 114, 307, 310, 334, 977
Sau3AI GATC 4 cut(s) 146, 412, 655, 918
Sau96I GGNCC 3 cut(s) 520, 569, 841
ScrFI CCNGG 3 cut(s) 518, 621, 839
SfaNI GCATC 3 cut(s) 26, 606, 635
SinI GGWCC 3 cut(s) 520, 569, 841
SmlI CTYRAG 2 cut(s) 203, 910
SmoI CTYRAG 2 cut(s) 203, 910
Sse9I AATT 6 cut(s) 181, 385, 778, 803, 833, 958
SsiI CCGC 5 cut(s) 306, 333, 336, 348, 366
SspMI CTAG 2 cut(s) 105, 773
StyD4I CCNGG 3 cut(s) 516, 619, 837
TaaI ACNGT 3 cut(s) 100, 359, 789
TaiI ACGT 2 cut(s) 536, 727
TaqI TCGA 1 cut(s) 946
TasI AATT 6 cut(s) 181, 385, 778, 803, 833, 958
TatI WGTACW 1 cut(s) 95
TauI GCSGC 2 cut(s) 309, 336
Tru1I TTAA 3 cut(s) 204, 464, 810
Tru9I TTAA 3 cut(s) 204, 464, 810
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 3 cut(s) 113, 309, 976
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 393, 670, 932, 951, 986
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 1 cut(s) 364
Vha464I CTTAAG 1 cut(s) 203
VpaK11BI GGWCC 3 cut(s) 520, 569, 841
XapI RAATTY 2 cut(s) 181, 958
XmiI GTMKAC 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 2 cut(s) 105, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.