Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006331

Physical Location & Seq

Genomic Coordinates Forward (+)

21402737 .. 21409988

Gene Structure 7252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28950.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGGGTCCAACGGAGGTGACGGTAACAATCATGGCAGAGGTGGTGGCGGCAAAGGTGATGATAGTAATGGTGGTGAAAACAATTGGTCTTTCCTCTCATGCACATGCTAGCTATCTATTTCTAGTGGTATTATGTTCAGCTAAACTGAACATCATTGAGTTGCGGATTAGGTATTTGGATCTTCTTGCAAAGTATCCTGTGTTGATAAAAGCTCTGACATCTGCAATTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACCTGAAAAGAACATTCTTATTTACCTTACTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTAACGTTCCCTGGAGCATCAGGTGCATTCATGAGCCTTCTACTTGATCAGTTTCTTTTTTCCCCTATGTTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCCTCGCAAGTCATACCCAAACTTCAACAGGAGTGGTTTTCTTCTGTGCTTGCTAATTGGCAACTGTGGGTACCTTTCCAATTTCTTAACTTTCGGTTTGTACCGCAGCAATTCCAGGTTCTTGCTGCTAATGTTATTGCTTTGGTATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGATTCTTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

230

Amino Acids

25.76

Weight (kDa)

9.2

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19750
fragaria_vesca	FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950 FvH4_1g28950
malus_domestica	MD12G1111600.v1.1 MD14G1100800.v1.1
prunus_persica	Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1 Prupe.7G022300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494371
rosa_laevigata	RLG00000022675
rosa_multiflora	Rmu_sc0006363.1_g000001 Rmu_sc0006363.1_g000002
rosa_roxburghii	Rroxscaffold_6G00391140
rosa_rugosa	Rorug03G0264800 Rorug03G0264900
rosa_samantha	Rh3AG315300 Rh3BG350500 Rh3CG347200 Rh3DG349800
rosa_wichuraiana	Rw3G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	562
AciI	CCGC	3 cut(s)	50, 166, 596
AclI	AACGTT	1 cut(s)	383
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	564, 594
AgsI	TTSAA	2 cut(s)	518, 683
AjnI	CCWGG	2 cut(s)	388, 606
AluBI	AGCT	5 cut(s)	114, 143, 215, 262, 665
AluI	AGCT	5 cut(s)	114, 143, 215, 262, 665
AlwI	GGATC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	346, 598, 617
Asp718I	GGTACC	1 cut(s)	562
AspS9I	GGNCC	2 cut(s)	8, 338
AsuHPI	GGTGA	3 cut(s)	31, 70, 88
AsuNHI	GCTAGC	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	8, 338
BanI	GGYRCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	496
BbvI	GCAGC	3 cut(s)	333, 604, 610
BciT130I	CCWGG	2 cut(s)	390, 608
BciVI	GTATCC	1 cut(s)	207
BclI	TGATCA	2 cut(s)	271, 424
BfaI	CTAG	2 cut(s)	111, 125
BfuI	GTATCC	1 cut(s)	207
BisI	GCNGC	4 cut(s)	51, 347, 599, 618
BlsI	GCNGC	4 cut(s)	52, 348, 600, 619
Bme1390I	CCNGG	2 cut(s)	390, 608
Bme18I	GGWCC	2 cut(s)	8, 338
BmgT120I	GGNCC	2 cut(s)	8, 338
BmiI	GGNNCC	2 cut(s)	9, 564
BmrFI	CCNGG	2 cut(s)	390, 608
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	404
BmtI	GCTAGC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	496
BpmI	CTGGAG	2 cut(s)	411, 503
BsaJI	CCNNGG	1 cut(s)	388
Bse1I	ACTGG	3 cut(s)	324, 381, 486
BseBI	CCWGG	2 cut(s)	390, 608
BseDI	CCNNGG	1 cut(s)	388
BseNI	ACTGG	3 cut(s)	324, 381, 486
BseXI	GCAGC	3 cut(s)	333, 604, 610
BshNI	GGYRCC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	181, 271, 424
BspACI	CCGC	3 cut(s)	50, 166, 596
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	9, 564
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	562
BsrI	ACTGG	3 cut(s)	324, 381, 486
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	181, 271, 424
Bst2UI	CCWGG	2 cut(s)	390, 608
Bst4CI	ACNGT	2 cut(s)	25, 558
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	112, 260, 543
BstDEI	CTNAG	1 cut(s)	368
BstKTI	GATC	3 cut(s)	184, 274, 427
BstMBI	GATC	3 cut(s)	181, 271, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	390, 608
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	388, 606
BstV1I	GCAGC	3 cut(s)	333, 604, 610
BstV2I	GAAGAC	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	112, 260, 543
CciI	TCATGA	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	8, 338
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	563, 593
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	5 cut(s)	34, 101, 107, 282, 409
CviJI	RGCY	6 cut(s)	114, 143, 215, 262, 414, 665
CviKI_1	RGCY	6 cut(s)	114, 143, 215, 262, 414, 665
CviQI	GTAC	2 cut(s)	563, 593
DdeI	CTNAG	1 cut(s)	368
DpnI	GATC	3 cut(s)	183, 273, 426
DpnII	GATC	3 cut(s)	181, 271, 424
DraI	TTTAAA	1 cut(s)	661
Eco47I	GGWCC	2 cut(s)	8, 338
EcoRII	CCWGG	2 cut(s)	388, 606
FaeI	CATG	5 cut(s)	37, 104, 110, 285, 412
FaiI	YATR	9 cut(s)	35, 102, 108, 136, 283, 410, 446, 506, 640
FalI	AAGNNNNNCTT	1 cut(s)	663
FatI	CATG	5 cut(s)	33, 100, 106, 281, 408
FbaI	TGATCA	2 cut(s)	271, 424
Fnu4HI	GCNGC	4 cut(s)	51, 347, 599, 618
Fsp4HI	GCNGC	4 cut(s)	51, 347, 599, 618
FspBI	CTAG	2 cut(s)	111, 125
GluI	GCNGC	4 cut(s)	51, 347, 599, 618
GsuI	CTGGAG	2 cut(s)	411, 503
HgaI	GACGC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	37, 104, 110, 285, 412
HinfI	GANTC	1 cut(s)	676
HphI	GGTGA	3 cut(s)	31, 70, 88
Hpy188I	TCNGA	2 cut(s)	219, 342
Hpy188III	TCNNGA	2 cut(s)	287, 409
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	25, 558
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	5 cut(s)	104, 191, 227, 349, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	1 cut(s)	368
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	5 cut(s)	37, 104, 110, 285, 412
KpnI	GGTACC	1 cut(s)	566
Ksp22I	TGATCA	2 cut(s)	271, 424
Kzo9I	GATC	3 cut(s)	181, 271, 424
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	3 cut(s)	333, 604, 610
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	111, 125
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	3 cut(s)	19, 25, 379
MalI	GATC	3 cut(s)	183, 273, 426
MboI	GATC	3 cut(s)	181, 271, 424
MboII	GAAGA	4 cut(s)	176, 501, 525, 671
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	5 cut(s)	84, 228, 547, 572, 602
MmeI	TCCRAC	2 cut(s)	35, 365
MnlI	CCTC	7 cut(s)	10, 34, 106, 248, 478, 505, 662
MseI	TTAA	3 cut(s)	233, 579, 660
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	390, 608
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	390, 608
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	3 cut(s)	181, 271, 424
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	5 cut(s)	37, 104, 110, 285, 412
NlaIV	GGNNCC	2 cut(s)	9, 564
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	408
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	52, 348, 600, 619
Psp1406I	AACGTT	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	388, 606
PspGI	CCWGG	2 cut(s)	388, 606
PspN4I	GGNNCC	2 cut(s)	9, 564
PspPI	GGNCC	2 cut(s)	8, 338
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	2 cut(s)	564, 594
RsaNI	GTAC	2 cut(s)	563, 593
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	233, 579, 660
SatI	GCNGC	4 cut(s)	51, 347, 599, 618
Sau3AI	GATC	3 cut(s)	181, 271, 424
Sau96I	GGNCC	2 cut(s)	8, 338
ScrFI	CCNGG	2 cut(s)	390, 608
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	2 cut(s)	8, 338
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	5 cut(s)	84, 228, 547, 572, 602
SsiI	CCGC	3 cut(s)	50, 166, 596
SspMI	CTAG	2 cut(s)	111, 125
StyD4I	CCNGG	2 cut(s)	388, 606
TaaI	ACNGT	2 cut(s)	25, 558
TaiI	ACGT	1 cut(s)	386
TasI	AATT	5 cut(s)	84, 228, 547, 572, 602
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	676
Tru1I	TTAA	3 cut(s)	233, 579, 660
Tru9I	TTAA	3 cut(s)	233, 579, 660
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	346, 598, 617
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	397
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	8, 338
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	111, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.