MD12G1111600.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0006331
Physical Location & Seq
Forward (+)
17704158 .. 17711290
7133 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1111600.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGCTCTAAACCCAGCATCCCTCACTCGTAAAACCCCGCTCCTAAACCGGTTCGTGGGTTCTTCTCGTAGACCTTCTTTGCATTCTTGTACTGCATATAGGATTGCAGCAAATCCAGTTCAGATATGGGGATTTAGGAGCACTTCTGTGTGCCAGTCTCACCCGCATGCTCTGCATTCTCACTCATTTCCCCTCAATTCCGGCATTGGAGTCGTGCTTAAGGACTTGGGTCGTTCTGAAATGGGTTTTAGGCAACTGGGCTATGACGGGTTTCGTCTTTCGGTTGTTTCCGATGGTGGGTCGGGTGGAGCTGGTGGAGACGGCGGCTTTGGTGATGGAAATTATGGCGGCAGAGGTGAAGGAGGTGCAAACGGTGAAGGTGGTGGCGGTGGTCGTGGTGAAAACAATTGGTCATTTCTTTCGTGGTATTTGGATCTTCTTGCAAAGTATCCAGTTGCAACAAAAGCTCTGACATCTGCTCTTTTAACTCTTATTGGGGATATGGTCTGCCAGTTTGTCATTGATAAAGCTCCGTACCTGGACCTGAAAAGAACGTTCTTGTTTACCCTGATGGGGCTGGTGTTAGTAGGTCCGACGTTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTAACAACGCCTGGAGCATCAGGTGCATTCCTGCGCCTTGTACTTGATCAGTTTCTTTTTGCTCCTATATTCATTGGAGTTTTCTTATCAACATTGATGACGCTGGAGGGAAAACCTTCACAAGTCGTACCCAAGCTTCAACAGGAGTGGTTTTCTGCTGTGCTAGTTAATTGGCAACTGTGGATACCTTTCCAATTTCTCAACTTTCGGTTTGTCCCACAGCAATTCCAGGTCCTTACTGCTAATTTTATAGCTTTGACATGGAATGTTATCCTCTCATTCAAAGCTCACAAAGAGATATGGGATGATTGCAGAGAAGAAGCTGTTTCCGGGAGACCTTTGTTCCGTTTTAGAAGGTTAATGTTGTACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

335

Amino Acids

36.94

Weight (kDa)

9.51

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 244 - 303 1.9e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 70
AciI CCGC 5 cut(s) 38, 164, 324, 348, 387
AclI AACGTT 1 cut(s) 554
AclWI GGATC 1 cut(s) 441
AfaI GTAC 5 cut(s) 91, 536, 672, 759, 998
AfiI CCNNNNNNNGG 3 cut(s) 55, 297, 573
AflII CTTAAG 1 cut(s) 218
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 2 cut(s) 770, 913
AjnI CCWGG 3 cut(s) 537, 640, 858
AleI CACNNNNGTG 1 cut(s) 146
AluBI AGCT 7 cut(s) 311, 467, 530, 766, 884, 917, 953
AluI AGCT 7 cut(s) 311, 467, 530, 766, 884, 917, 953
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 162, 312, 958
AlwI GGATC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 3 cut(s) 541, 590, 862
AsuC2I CCSGG 1 cut(s) 961
AsuHPI GGTGA 5 cut(s) 152, 344, 368, 386, 410
AvaII GGWCC 3 cut(s) 541, 590, 862
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 119
BccI CCATC 3 cut(s) 287, 329, 565
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BciT130I CCWGG 3 cut(s) 539, 642, 860
BciVI GTATCC 2 cut(s) 459, 807
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 961
BcoDI GTCTC 3 cut(s) 162, 312, 958
BfaI CTAG 1 cut(s) 794
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 2 cut(s) 459, 807
BisI GCNGC 3 cut(s) 108, 325, 349
BlsI GCNGC 3 cut(s) 109, 326, 350
Bme1390I CCNGG 4 cut(s) 539, 642, 860, 961
Bme18I GGWCC 3 cut(s) 541, 590, 862
BmgT120I GGNCC 3 cut(s) 541, 590, 862
BmrFI CCNGG 4 cut(s) 539, 642, 860, 961
BmrI ACTGGG 1 cut(s) 266
BmsI GCATC 2 cut(s) 26, 656
BmuI ACTGGG 1 cut(s) 266
BoxI GACNNNNGTC 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 663, 755
BpuMI CCSGG 1 cut(s) 961
BsaI GGTCTC 1 cut(s) 958
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 297, 573
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 6 cut(s) 116, 154, 261, 452, 511, 633
BseBI CCWGG 3 cut(s) 539, 642, 860
BseGI GGATG 2 cut(s) 17, 940
BseLI CCNNNNNNNGG 3 cut(s) 55, 297, 573
BseNI ACTGG 6 cut(s) 116, 154, 261, 452, 511, 633
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 13
BshTI ACCGGT 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 3 cut(s) 49, 201, 960
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 3 cut(s) 55, 297, 573
BsmAI GTCTC 3 cut(s) 162, 312, 958
BsmBI CGTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 830
BsmI GAATGC 3 cut(s) 82, 175, 656
Bso31I GGTCTC 1 cut(s) 958
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 433, 676
BspACI CCGC 5 cut(s) 38, 164, 324, 348, 387
BspPI GGATC 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 958
BsrBI CCGCTC 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 6 cut(s) 116, 154, 261, 452, 511, 633
BssAI RCCGGY 1 cut(s) 48
BssMI GATC 2 cut(s) 433, 676
Bst2UI CCWGG 3 cut(s) 539, 642, 860
Bst4CI ACNGT 2 cut(s) 374, 810
BstAFI CTTAAG 1 cut(s) 218
BstAPI GCANNNNNTGC 2 cut(s) 172, 653
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 17, 940
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 2 cut(s) 436, 679
BstMAI GTCTC 3 cut(s) 162, 312, 958
BstMBI GATC 2 cut(s) 433, 676
BstMWI GCNNNNNNNGC 3 cut(s) 172, 464, 653
BstNI CCWGG 3 cut(s) 539, 642, 860
BstNSI RCATGY 1 cut(s) 170
BstPAI GACNNNNGTC 1 cut(s) 228
BstSCI CCNGG 4 cut(s) 537, 640, 858, 959
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BsuI GTATCC 2 cut(s) 459, 807
BtsCI GGATG 2 cut(s) 17, 940
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 541, 590, 862
CseI GACGC 1 cut(s) 739
Csp6I GTAC 5 cut(s) 90, 535, 671, 758, 997
CspAI ACCGGT 1 cut(s) 48
CspCI CAANNNNNGTGG 2 cut(s) 758, 793
CviAII CATG 2 cut(s) 167, 891
CviQI GTAC 5 cut(s) 90, 535, 671, 758, 997
DdeI CTNAG 1 cut(s) 620
DpnI GATC 2 cut(s) 435, 678
DpnII GATC 2 cut(s) 433, 676
Eco31I GGTCTC 1 cut(s) 958
Eco47I GGWCC 3 cut(s) 541, 590, 862
EcoO109I RGGNCCY 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 537, 640, 858
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 2 cut(s) 170, 894
FaqI GGGAC 1 cut(s) 830
FatI CATG 2 cut(s) 166, 890
FauI CCCGC 2 cut(s) 45, 171
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 108, 325, 349
FokI GGATG 2 cut(s) 4, 947
Fsp4HI GCNGC 3 cut(s) 108, 325, 349
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 665
GluI GCNGC 3 cut(s) 108, 325, 349
GsaI CCCAGC 1 cut(s) 17
GsuI CTGGAG 2 cut(s) 663, 755
HapII CCGG 3 cut(s) 49, 201, 960
HgaI GACGC 1 cut(s) 739
HhaI GCGC 1 cut(s) 666
Hin1II CATG 2 cut(s) 170, 894
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 1 cut(s) 210
HpaII CCGG 3 cut(s) 49, 201, 960
HphI GGTGA 5 cut(s) 152, 344, 368, 386, 410
Hpy166II GTNNAC 2 cut(s) 71, 564
Hpy188I TCNGA 5 cut(s) 123, 238, 292, 471, 594
Hpy8I GTNNAC 2 cut(s) 71, 564
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 5 cut(s) 84, 353, 371, 756, 978
HpyCH4III ACNGT 2 cut(s) 374, 810
HpyCH4IV ACGT 3 cut(s) 554, 596, 999
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 464, 653
HpyF3I CTNAG 1 cut(s) 620
HpySE526I ACGT 3 cut(s) 554, 596, 999
Hsp92II CATG 2 cut(s) 170, 894
HspAI GCGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 2 cut(s) 433, 676
LmnI GCTCC 6 cut(s) 45, 138, 308, 535, 644, 697
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 2 cut(s) 26, 656
MaeI CTAG 1 cut(s) 794
MaeII ACGT 3 cut(s) 554, 596, 999
MaeIII GTNAC 1 cut(s) 631
MalI GATC 2 cut(s) 435, 678
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 433, 676
MboII GAAGA 3 cut(s) 54, 428, 959
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 7 cut(s) 196, 340, 406, 799, 824, 854, 874
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 6 cut(s) 32, 203, 347, 356, 730, 914
MroXI GAANNNNTTC 1 cut(s) 745
MseI TTAA 4 cut(s) 219, 485, 798, 989
MslI CAYNNNNRTG 2 cut(s) 146, 165
MspCI CTTAAG 1 cut(s) 218
MspI CCGG 3 cut(s) 49, 201, 960
MspR9I CCNGG 4 cut(s) 539, 642, 860, 961
MunI CAATTG 1 cut(s) 406
Mva1269I GAATGC 3 cut(s) 82, 175, 656
MvaI CCWGG 3 cut(s) 539, 642, 860
MwoI GCNNNNNNNGC 3 cut(s) 172, 464, 653
NciI CCSGG 1 cut(s) 961
NdeII GATC 2 cut(s) 433, 676
NlaIII CATG 2 cut(s) 170, 894
NspI RCATGY 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 146
PaeI GCATGC 1 cut(s) 170
PctI GAATGC 3 cut(s) 82, 175, 656
PdmI GAANNNNTTC 1 cut(s) 745
PfoI TCCNGGA 1 cut(s) 959
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 3 cut(s) 109, 326, 350
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 862
Psp6I CCWGG 3 cut(s) 537, 640, 858
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 3 cut(s) 537, 640, 858
PspPI GGNCC 3 cut(s) 541, 590, 862
PspPPI RGGWCCY 1 cut(s) 862
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 5 cut(s) 91, 536, 672, 759, 998
RsaNI GTAC 5 cut(s) 90, 535, 671, 758, 997
RseI CAYNNNNRTG 2 cut(s) 146, 165
SaqAI TTAA 4 cut(s) 219, 485, 798, 989
SatI GCNGC 3 cut(s) 108, 325, 349
Sau3AI GATC 2 cut(s) 433, 676
Sau96I GGNCC 3 cut(s) 541, 590, 862
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 4 cut(s) 539, 642, 860, 961
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 2 cut(s) 26, 656
SinI GGWCC 3 cut(s) 541, 590, 862
SmiMI CAYNNNNRTG 2 cut(s) 146, 165
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SphI GCATGC 1 cut(s) 170
Sse9I AATT 7 cut(s) 196, 340, 406, 799, 824, 854, 874
SsiI CCGC 5 cut(s) 38, 164, 324, 348, 387
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 4 cut(s) 537, 640, 858, 959
TaaI ACNGT 2 cut(s) 374, 810
TaiI ACGT 3 cut(s) 557, 599, 1002
TasI AATT 7 cut(s) 196, 340, 406, 799, 824, 854, 874
TatI WGTACW 2 cut(s) 89, 670
TauI GCSGC 2 cut(s) 327, 351
Tru1I TTAA 4 cut(s) 219, 485, 798, 989
Tru9I TTAA 4 cut(s) 219, 485, 798, 989
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 691
TspGWI ACGGA 2 cut(s) 522, 965
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 3 cut(s) 541, 590, 862
XceI RCATGY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 745
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.