RLG00000022675

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006331
Physical Location & Seq
Forward (+)
7405448 .. 7409953
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022675

Sequence Viewer

Length: 837 bp
ATGACTCCAAACCTTGTATCACTCACTCGTACATCCCCATTCTTAAATCCTTTTGTAGGAGGATGTTGTTCCCGTAAACCCATTTTGCATTCTACGACGATTGCAGCAAATCGAATTCAGACCCGTTCTCACTCGTATGCTCTGAATTCCGGGAATGGAATAGGATTCCGGCAACTGCGTTTTAGTCCGAAGGCGGTTTCCGATGATGGGTCCAACGGAAGTGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGATGAAGGTGGTGGCAAAGGTGATGATAGTAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCACAGTATCCTGTGTCGATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACGTTGCCTGGAGCATCAGGTGCATTCATGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTATATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTCCAGGTTCTTACTGCTAATGTTATTGCTTTGGTATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

279

Amino Acids

30.52

Weight (kDa)

9.12

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 209 - 268 1.2e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 194, 240
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 114, 145
AfaI GTAC 3 cut(s) 31, 654, 741
AfiI CCNNNNNNNGG 2 cut(s) 56, 207
AgsI TTSAA 1 cut(s) 830
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 2 cut(s) 535, 753
AluBI AGCT 4 cut(s) 362, 409, 661, 812
AluI AGCT 4 cut(s) 362, 409, 661, 812
AlwI GGATC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 104, 493
ApoI RAATTY 2 cut(s) 114, 145
Asp700I GAANNNNTTC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 210, 485
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 210, 485
BbsI GAAGAC 1 cut(s) 643
BbvI GCAGC 2 cut(s) 116, 480
BccI CCATC 2 cut(s) 200, 218
BciT130I CCWGG 2 cut(s) 537, 755
BciVI GTATCC 2 cut(s) 354, 702
BclI TGATCA 2 cut(s) 418, 571
BcnI CCSGG 1 cut(s) 151
BfuI GTATCC 2 cut(s) 354, 702
BisI GCNGC 2 cut(s) 105, 494
BlsI GCNGC 2 cut(s) 106, 495
Bme1390I CCNGG 3 cut(s) 151, 537, 755
Bme18I GGWCC 2 cut(s) 210, 485
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 210, 485
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 151, 537, 755
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 2 cut(s) 558, 650
BpuMI CCSGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 207
Bse1I ACTGG 2 cut(s) 528, 633
BseBI CCWGG 2 cut(s) 537, 755
BseGI GGATG 2 cut(s) 32, 68
BseLI CCNNNNNNNGG 2 cut(s) 56, 207
BseNI ACTGG 2 cut(s) 528, 633
BseXI GCAGC 2 cut(s) 116, 480
BseYI CCCAGC 1 cut(s) 466
BsiSI CCGG 2 cut(s) 150, 169
BslI CCNNNNNNNGG 2 cut(s) 56, 207
BsmI GAATGC 2 cut(s) 88, 551
Bsp143I GATC 3 cut(s) 328, 418, 571
BspACI CCGC 2 cut(s) 194, 240
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 2 cut(s) 528, 633
BssMI GATC 3 cut(s) 328, 418, 571
Bst2UI CCWGG 2 cut(s) 537, 755
Bst4CI ACNGT 2 cut(s) 342, 705
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 407, 690
BstDEI CTNAG 1 cut(s) 515
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 32, 68
BstKTI GATC 3 cut(s) 331, 421, 574
BstMBI GATC 3 cut(s) 328, 418, 571
BstMWI GCNNNNNNNGC 2 cut(s) 548, 689
BstNI CCWGG 2 cut(s) 537, 755
BstSCI CCNGG 3 cut(s) 149, 535, 753
BstV1I GCAGC 2 cut(s) 116, 480
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 2 cut(s) 354, 702
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 2 cut(s) 32, 68
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 2 cut(s) 407, 690
CciI TCATGA 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 210, 485
CseI GACGC 1 cut(s) 499
Csp6I GTAC 3 cut(s) 30, 653, 740
CspCI CAANNNNNGTGG 2 cut(s) 653, 688
CviAII CATG 4 cut(s) 251, 318, 429, 556
CviJI RGCY 5 cut(s) 362, 409, 561, 661, 812
CviKI_1 RGCY 5 cut(s) 362, 409, 561, 661, 812
CviQI GTAC 3 cut(s) 30, 653, 740
DdeI CTNAG 1 cut(s) 515
DpnI GATC 3 cut(s) 330, 420, 573
DpnII GATC 3 cut(s) 328, 418, 571
DraI TTTAAA 1 cut(s) 808
EciI GGCGGA 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 210, 485
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRI GAATTC 2 cut(s) 114, 145
EcoRII CCWGG 2 cut(s) 535, 753
FaeI CATG 4 cut(s) 254, 321, 432, 559
FaiI YATR 7 cut(s) 138, 252, 319, 430, 557, 593, 787
FalI AAGNNNNNCTT 1 cut(s) 810
FatI CATG 4 cut(s) 250, 317, 428, 555
FbaI TGATCA 2 cut(s) 418, 571
Fnu4HI GCNGC 2 cut(s) 105, 494
FokI GGATG 2 cut(s) 19, 75
Fsp4HI GCNGC 2 cut(s) 105, 494
GluI GCNGC 2 cut(s) 105, 494
GsaI CCCAGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 558, 650
HapII CCGG 2 cut(s) 150, 169
HgaI GACGC 1 cut(s) 499
Hin1II CATG 4 cut(s) 254, 321, 432, 559
HinfI GANTC 2 cut(s) 4, 165
HpaII CCGG 2 cut(s) 150, 169
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 6 cut(s) 120, 144, 189, 202, 366, 489
Hpy188III TCNNGA 2 cut(s) 434, 556
Hpy8I GTNNAC 1 cut(s) 77
Hpy99I CGWCG 2 cut(s) 100, 493
HpyAV CCTTC 4 cut(s) 184, 269, 572, 651
HpyCH4III ACNGT 2 cut(s) 342, 705
HpyCH4IV ACGT 2 cut(s) 438, 530
HpyCH4V TGCA 6 cut(s) 88, 104, 338, 374, 496, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 689
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 2 cut(s) 438, 530
Hsp92II CATG 4 cut(s) 254, 321, 432, 559
Ksp22I TGATCA 2 cut(s) 418, 571
Kzo9I GATC 3 cut(s) 328, 418, 571
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 2 cut(s) 116, 480
LweI GCATC 1 cut(s) 551
MaeII ACGT 2 cut(s) 438, 530
MaeIII GTNAC 1 cut(s) 526
MalI GATC 3 cut(s) 330, 420, 573
MboI GATC 3 cut(s) 328, 418, 571
MboII GAAGA 3 cut(s) 323, 648, 818
MflI RGATCY 1 cut(s) 328
MluCI AATT 8 cut(s) 114, 145, 229, 301, 648, 694, 719, 749
MmeI TCCRAC 2 cut(s) 237, 512
MnlI CCTC 8 cut(s) 53, 251, 257, 323, 395, 625, 809, 814
MroXI GAANNNNTTC 1 cut(s) 640
MseI TTAA 4 cut(s) 44, 380, 726, 807
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 2 cut(s) 150, 169
MspR9I CCNGG 3 cut(s) 151, 537, 755
Mva1269I GAATGC 2 cut(s) 88, 551
MvaI CCWGG 2 cut(s) 537, 755
MwoI GCNNNNNNNGC 2 cut(s) 548, 689
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 328, 418, 571
NlaIII CATG 4 cut(s) 254, 321, 432, 559
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 555
PctI GAATGC 2 cut(s) 88, 551
PdmI GAANNNNTTC 1 cut(s) 640
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 2 cut(s) 106, 495
Psp6I CCWGG 2 cut(s) 535, 753
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 2 cut(s) 535, 753
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 210, 485
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 3 cut(s) 31, 654, 741
RsaNI GTAC 3 cut(s) 30, 653, 740
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 4 cut(s) 44, 380, 726, 807
SatI GCNGC 2 cut(s) 105, 494
Sau3AI GATC 3 cut(s) 328, 418, 571
Sau96I GGNCC 2 cut(s) 210, 485
ScrFI CCNGG 3 cut(s) 151, 537, 755
SfaNI GCATC 1 cut(s) 551
SinI GGWCC 2 cut(s) 210, 485
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 8 cut(s) 114, 145, 229, 301, 648, 694, 719, 749
SsiI CCGC 2 cut(s) 194, 240
StyD4I CCNGG 3 cut(s) 149, 535, 753
TaaI ACNGT 2 cut(s) 342, 705
TaiI ACGT 2 cut(s) 441, 533
TaqI TCGA 2 cut(s) 112, 353
TasI AATT 8 cut(s) 114, 145, 229, 301, 648, 694, 719, 749
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 4 cut(s) 44, 380, 726, 807
Tru9I TTAA 4 cut(s) 44, 380, 726, 807
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 2 cut(s) 104, 493
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 288, 544
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 1 cut(s) 633
VpaK11BI GGWCC 2 cut(s) 210, 485
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 2 cut(s) 114, 145
XmnI GAANNNNTTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.