Rorug03G0264800

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006331
Physical Location & Seq
Forward (+)
25731895 .. 25735683
3789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0264800.1

Sequence Viewer

Length: 1002 bp
ATGTATAAGTTATATTATCTTTTGTCTCTATTCTCTCCAACACGTTCCCTCAAGCGCAACCTACGCAACCTAGCTATCTCTAGTGCGTTGTTATTCGATGGTGGCTATTGTGAGGTTGGCTTTTTGCAGTCGAAGGGAGTAGAGCACAGGAAGCTATTAAATCGTTGGAATCATCACGTGAAGAAGGGAAGAGATTGGTTTCTGTTCGGTTTGGATAAGTGGTCGGCTTTTGGTTGCGTGGATTGTGAAAGGTTTAACATCGAAGGTATTACGCGGGATATTGTTCATTGTGCGATTTCCGATTTCAGTAATTGGTTGGAAGAGCTTGGAGGGATATTGTTTGTTGTGGAGTTTGCGATTTCAGTAATTGGTTGGAAGAGGTTGGAGGTTCTATGCAAAGGAGACTCTCAATTGTTTTTCTGCCATTGTTCCTGTATCTGTTATTTGCTATTGGTTTCGTGTTCTATTGTTATTCAGATATCAGGAACAGTGAACTGTCAAAATCTCCAAGATTGTAAGTATTTCTGTTCAGAAGATCCTCAGATGAATCAGGTGATGATGAGTTGTGATGAGAAACTGAAGCATAACCTTATGCTGATGGAGCGACAGAGAGAAATGATGGCATCGAAAATCGTATCGAGAGAAACAAAGAGAATGCTAGCACAGTGTGATAATAGTCAGAATTCTACTTCAATGAGAACTGACAAGTCAAGGAGATCAAAGAGGTGGAAAACAGCATGTCAACAGCAAGCTACTGAAGCATCAAATAGTTTCTGTGGAAATGACGAACAGAATTCTGCTGTAATTCTGAATAGGGATGTATCAGTTAATGCAGAGGATCATGAATATCATCAGGTTACATCAAGGAGGTCAAAGAGGTTAAAGACTGTGTCTCAACAACAAACTGCTGAAATGTCAAATAGTTTTTGTGCAAATGATGAACAAAATACTGCTTCAAGTACAGAAGTTATTGGTCTTAATTTCACCACATTTACAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

333

Amino Acids

38.24

Weight (kDa)

8.06

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 530, 846
AcsI RAATTY 2 cut(s) 682, 793
AcuI CTGAAG 2 cut(s) 599, 777
AcvI CACGTG 1 cut(s) 178
AdeI CACNNNGTG 1 cut(s) 668
AfaI GTAC 1 cut(s) 961
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 693, 957
AluBI AGCT 4 cut(s) 74, 154, 325, 752
AluI AGCT 4 cut(s) 74, 154, 325, 752
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 30, 396, 897
AlwI GGATC 2 cut(s) 530, 846
ApoI RAATTY 2 cut(s) 682, 793
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 565, 976
AsuNHI GCTAGC 1 cut(s) 658
BbrPI CACGTG 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 92, 592, 613
BcoDI GTCTC 3 cut(s) 30, 396, 897
BfaI CTAG 3 cut(s) 71, 81, 659
BmsI GCATC 2 cut(s) 632, 770
BmtI GCTAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 178
BseGI GGATG 1 cut(s) 823
BseMII CTCAG 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 147
BsmAI GTCTC 3 cut(s) 30, 396, 897
BsmI GAATGC 1 cut(s) 660
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 535, 716, 838
BspACI CCGC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 841
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 2 cut(s) 530, 846
BspQI GCTCTTC 1 cut(s) 315
BssMI GATC 3 cut(s) 535, 716, 838
Bst4CI ACNGT 4 cut(s) 490, 497, 666, 889
Bst6I CTCTTC 3 cut(s) 184, 315, 371
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 660, 750
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 823
BstFNI CGCG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 538, 719, 841
BstMAI GTCTC 3 cut(s) 30, 396, 897
BstMBI GATC 3 cut(s) 535, 716, 838
BstMWI GCNNNNNNNGC 4 cut(s) 63, 151, 601, 758
BstNSI RCATGY 1 cut(s) 741
BstUI CGCG 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 2 cut(s) 495, 671
Cac8I GCNNGC 2 cut(s) 660, 750
CciI TCATGA 1 cut(s) 841
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 960
CviAII CATG 2 cut(s) 738, 842
CviJI RGCY 7 cut(s) 74, 105, 120, 154, 227, 325, 752
CviKI_1 RGCY 7 cut(s) 74, 105, 120, 154, 227, 325, 752
CviQI GTAC 1 cut(s) 960
DdeI CTNAG 1 cut(s) 540
DpnI GATC 3 cut(s) 537, 718, 840
DpnII GATC 3 cut(s) 535, 716, 838
DraIII CACNNNGTG 1 cut(s) 668
Eam1104I CTCTTC 3 cut(s) 184, 315, 371
EarI CTCTTC 3 cut(s) 184, 315, 371
Eco32I GATATC 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 599, 777
Eco72I CACGTG 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 682, 793
EcoRV GATATC 1 cut(s) 480
FaeI CATG 2 cut(s) 741, 845
FaiI YATR 7 cut(s) 6, 13, 394, 585, 593, 739, 843
FatI CATG 2 cut(s) 737, 841
FauI CCCGC 1 cut(s) 267
FokI GGATG 1 cut(s) 830
FspBI CTAG 3 cut(s) 71, 81, 659
GlaI GCGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 741, 845
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 3 cut(s) 169, 404, 547
HphI GGTGA 2 cut(s) 565, 976
Hpy166II GTNNAC 2 cut(s) 493, 743
Hpy188I TCNGA 6 cut(s) 301, 477, 532, 543, 681, 810
Hpy188III TCNNGA 3 cut(s) 483, 639, 842
Hpy8I GTNNAC 2 cut(s) 493, 743
HpyAV CCTTC 3 cut(s) 127, 178, 257
HpyCH4III ACNGT 4 cut(s) 490, 497, 666, 889
HpyCH4IV ACGT 2 cut(s) 43, 177
HpyCH4V TGCA 4 cut(s) 127, 396, 833, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 151, 601, 758
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 2 cut(s) 43, 177
Hsp92II CATG 2 cut(s) 741, 845
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 535, 716, 838
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 601
LpnPI CCDG 5 cut(s) 133, 445, 468, 536, 839
LweI GCATC 2 cut(s) 632, 770
MaeI CTAG 3 cut(s) 71, 81, 659
MaeII ACGT 2 cut(s) 43, 177
MaeIII GTNAC 1 cut(s) 856
MalI GATC 3 cut(s) 537, 718, 840
MboI GATC 3 cut(s) 535, 716, 838
MboII GAAGA 5 cut(s) 193, 201, 332, 388, 545
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 7 cut(s) 310, 366, 410, 682, 793, 804, 979
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 5 cut(s) 62, 146, 297, 353, 363
MseI TTAA 5 cut(s) 158, 255, 828, 881, 978
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 660
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 4 cut(s) 63, 151, 601, 758
NdeII GATC 3 cut(s) 535, 716, 838
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 741, 845
NspI RCATGY 1 cut(s) 741
PagI TCATGA 1 cut(s) 841
PciSI GCTCTTC 1 cut(s) 315
PctI GAATGC 1 cut(s) 660
PfeI GAWTC 2 cut(s) 169, 547
PflFI GACNNNGTC 1 cut(s) 889
PleI GAGTC 1 cut(s) 398
PmaCI CACGTG 1 cut(s) 178
PmlI CACGTG 1 cut(s) 178
PpsI GAGTC 1 cut(s) 398
Ppu21I YACGTR 1 cut(s) 178
PspCI CACGTG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 535
PsyI GACNNNGTC 1 cut(s) 889
RsaI GTAC 1 cut(s) 961
RsaNI GTAC 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 5 cut(s) 158, 255, 828, 881, 978
Sau3AI GATC 3 cut(s) 535, 716, 838
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 632, 770
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 7 cut(s) 310, 366, 410, 682, 793, 804, 979
SsiI CCGC 1 cut(s) 274
SspMI CTAG 3 cut(s) 71, 81, 659
TaaI ACNGT 4 cut(s) 490, 497, 666, 889
TaiI ACGT 2 cut(s) 46, 180
TaqI TCGA 5 cut(s) 96, 131, 261, 626, 638
TasI AATT 7 cut(s) 310, 366, 410, 682, 793, 804, 979
TatI WGTACW 1 cut(s) 959
TfiI GAWTC 2 cut(s) 169, 547
Tru1I TTAA 5 cut(s) 158, 255, 828, 881, 978
Tru9I TTAA 5 cut(s) 158, 255, 828, 881, 978
TscAI CASTG 2 cut(s) 495, 671
TspDTI ATGAA 4 cut(s) 275, 560, 858, 954
TspRI CASTG 2 cut(s) 495, 671
Tth111I GACNNNGTC 1 cut(s) 889
XapI RAATTY 2 cut(s) 682, 793
XceI RCATGY 1 cut(s) 741
XspI CTAG 3 cut(s) 71, 81, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.