Rh3AG315300

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006331
Physical Location & Seq
Reverse (-)
42793081 .. 42797597
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG315300.1

Sequence Viewer

Length: 861 bp
ATGACAATGACTCCGAACCTTGTATCACTCACTCGTACATCCCCATTCTTAAATCCTTTTGTAGGAGGATGTTGTTCCCGTAAACCCATTTTGCATTCTACTACGATTTCAGCAAATCGAATTCAGACCCGTTCTCACTCGTACGCTCTGAATTCCGGTAATGGAATAGGATTCCGGCAACTGCGTTTTAGTCCGAAGGCGGTTTCTGATGATGGGTCCAACGGAAGTGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGAAGGTGAAGGTGGTGGCAAAGGTGATGATAGCAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCAAAGTATCCTGCGTCGATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACGTTGCCTGGAGCATCAGGTGCATTCGTGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTACATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTCCAGGTTCTTACCGCTAATGTTATTGCTTTGGCATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

286

Amino Acids

31.02

Weight (kDa)

9.25

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 217 - 276 1.5e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 200, 246, 789
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 2 cut(s) 120, 151
AfaI GTAC 4 cut(s) 37, 143, 678, 765
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 854
AjiI CACGTC 1 cut(s) 463
AjnI CCWGG 2 cut(s) 559, 777
AluBI AGCT 4 cut(s) 386, 433, 685, 836
AluI AGCT 4 cut(s) 386, 433, 685, 836
AlwI GGATC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 2 cut(s) 120, 151
Asp700I GAANNNNTTC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 216, 509
AsuHPI GGTGA 3 cut(s) 302, 308, 326
AvaII GGWCC 2 cut(s) 216, 509
BbsI GAAGAC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 504
BccI CCATC 2 cut(s) 206, 224
BciT130I CCWGG 2 cut(s) 561, 779
BciVI GTATCC 2 cut(s) 378, 726
BclI TGATCA 2 cut(s) 442, 595
BfuI GTATCC 2 cut(s) 378, 726
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
Bme1390I CCNGG 2 cut(s) 561, 779
Bme18I GGWCC 2 cut(s) 216, 509
BmgBI CACGTC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 216, 509
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 561, 779
BmsI GCATC 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 667
BpmI CTGGAG 2 cut(s) 582, 674
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 552, 657
BseBI CCWGG 2 cut(s) 561, 779
BseGI GGATG 2 cut(s) 38, 74
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 2 cut(s) 552, 657
BseXI GCAGC 1 cut(s) 504
BseYI CCCAGC 1 cut(s) 490
BsiSI CCGG 2 cut(s) 156, 175
BsiWI CGTACG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 62
BsmI GAATGC 2 cut(s) 94, 575
Bsp143I GATC 3 cut(s) 352, 442, 595
BspACI CCGC 3 cut(s) 200, 246, 789
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 360
BsrI ACTGG 2 cut(s) 552, 657
BssMI GATC 3 cut(s) 352, 442, 595
Bst2UI CCWGG 2 cut(s) 561, 779
Bst4CI ACNGT 1 cut(s) 729
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 431, 714
BstDEI CTNAG 1 cut(s) 539
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 38, 74
BstKTI GATC 3 cut(s) 355, 445, 598
BstMBI GATC 3 cut(s) 352, 442, 595
BstMWI GCNNNNNNNGC 2 cut(s) 572, 713
BstNI CCWGG 2 cut(s) 561, 779
BstSCI CCNGG 2 cut(s) 559, 777
BstV1I GCAGC 1 cut(s) 504
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuI GTATCC 2 cut(s) 378, 726
BtrI CACGTC 1 cut(s) 463
BtsCI GGATG 2 cut(s) 38, 74
BtsIMutI CAGTG 1 cut(s) 650
Cac8I GCNNGC 2 cut(s) 431, 714
Cfr13I GGNCC 2 cut(s) 216, 509
CseI GACGC 2 cut(s) 363, 523
Csp6I GTAC 4 cut(s) 36, 142, 677, 764
CspCI CAANNNNNGTGG 2 cut(s) 677, 712
CviAII CATG 4 cut(s) 257, 342, 453, 810
CviJI RGCY 5 cut(s) 386, 433, 585, 685, 836
CviKI_1 RGCY 5 cut(s) 386, 433, 585, 685, 836
CviQI GTAC 4 cut(s) 36, 142, 677, 764
DdeI CTNAG 1 cut(s) 539
DpnI GATC 3 cut(s) 354, 444, 597
DpnII GATC 3 cut(s) 352, 442, 595
DraI TTTAAA 1 cut(s) 832
EciI GGCGGA 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 216, 509
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRI GAATTC 2 cut(s) 120, 151
EcoRII CCWGG 2 cut(s) 559, 777
FaeI CATG 4 cut(s) 260, 345, 456, 813
FaiI YATR 4 cut(s) 258, 343, 454, 811
FalI AAGNNNNNCTT 1 cut(s) 834
FatI CATG 4 cut(s) 256, 341, 452, 809
FbaI TGATCA 2 cut(s) 442, 595
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 2 cut(s) 25, 81
Fsp4HI GCNGC 1 cut(s) 518
GluI GCNGC 1 cut(s) 518
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 2 cut(s) 582, 674
HapII CCGG 2 cut(s) 156, 175
HgaI GACGC 2 cut(s) 363, 523
Hin1II CATG 4 cut(s) 260, 345, 456, 813
HinfI GANTC 2 cut(s) 10, 171
HpaII CCGG 2 cut(s) 156, 175
HphI GGTGA 3 cut(s) 302, 308, 326
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 7 cut(s) 15, 126, 150, 195, 208, 390, 513
Hpy188III TCNNGA 2 cut(s) 458, 580
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 2 cut(s) 379, 517
HpyAV CCTTC 5 cut(s) 190, 287, 293, 596, 675
HpyCH4III ACNGT 1 cut(s) 729
HpyCH4IV ACGT 2 cut(s) 462, 554
HpyCH4V TGCA 5 cut(s) 94, 362, 398, 520, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 713
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 462, 554
Hsp92II CATG 4 cut(s) 260, 345, 456, 813
Ksp22I TGATCA 2 cut(s) 442, 595
Kzo9I GATC 3 cut(s) 352, 442, 595
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 1 cut(s) 575
MaeII ACGT 2 cut(s) 462, 554
MaeIII GTNAC 1 cut(s) 550
MalI GATC 3 cut(s) 354, 444, 597
MboI GATC 3 cut(s) 352, 442, 595
MboII GAAGA 3 cut(s) 347, 672, 842
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 352
MluCI AATT 8 cut(s) 120, 151, 235, 325, 672, 718, 743, 773
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 243, 536
MroXI GAANNNNTTC 1 cut(s) 664
MseI TTAA 4 cut(s) 50, 404, 750, 831
MspI CCGG 2 cut(s) 156, 175
MspR9I CCNGG 2 cut(s) 561, 779
MunI CAATTG 1 cut(s) 325
Mva1269I GAATGC 2 cut(s) 94, 575
MvaI CCWGG 2 cut(s) 561, 779
MwoI GCNNNNNNNGC 2 cut(s) 572, 713
NdeII GATC 3 cut(s) 352, 442, 595
NlaIII CATG 4 cut(s) 260, 345, 456, 813
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 550
PctI GAATGC 2 cut(s) 94, 575
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 519
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 559, 777
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 559, 777
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 216, 509
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 4 cut(s) 37, 143, 678, 765
RsaNI GTAC 4 cut(s) 36, 142, 677, 764
SaqAI TTAA 4 cut(s) 50, 404, 750, 831
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 3 cut(s) 352, 442, 595
Sau96I GGNCC 2 cut(s) 216, 509
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 561, 779
SfaNI GCATC 1 cut(s) 575
SinI GGWCC 2 cut(s) 216, 509
Sse9I AATT 8 cut(s) 120, 151, 235, 325, 672, 718, 743, 773
SsiI CCGC 3 cut(s) 200, 246, 789
StyD4I CCNGG 2 cut(s) 559, 777
TaaI ACNGT 1 cut(s) 729
TaiI ACGT 2 cut(s) 465, 557
TaqI TCGA 2 cut(s) 118, 377
TasI AATT 8 cut(s) 120, 151, 235, 325, 672, 718, 743, 773
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 50, 404, 750, 831
Tru9I TTAA 4 cut(s) 50, 404, 750, 831
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 550
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 657
VpaK11BI GGWCC 2 cut(s) 216, 509
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 2 cut(s) 120, 151
XmnI GAANNNNTTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.