Rh3DG349800

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006331
Physical Location & Seq
Reverse (-)
41504139 .. 41508596
4458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG349800.1

Sequence Viewer

Length: 837 bp
ATGACAATGACTCCAAACCTTGTATCACTCACTCGTACATCCCCATTCTTAAGTCATTTTGTAGGAGGTTGTTGTTCCCGTAAACCCATTTTGCATTCTACTACGATCTCAGCAAATCGAATTCAGACCCGTTCTCACTCGTACGCTCTGAATTCCGGTAATGGAATAGGATTCCGGCAACTGCGTTTTAGTCCGAAGGCGGTTTCCGATGATGGGTCCAACGGAAGTGATGGTAATTCTGGTGGCGGAAACAATCATGGCAGAGGTGGAGGTGGAGGTGGTGGCAAAGGTGATGATAGTAATTGGTCTTTCCTCTCATGGTATTTGGATCTTCTTGCAAAGTATCCTGCGTCCATAAAAGCTCTGACATCTGCATTTTTAACCCTCATTGGAGATGTTATCTGCCAGCTTGTTATTGATCAAGTTCCATGTCTTGACGTGAAAAGAACATTCTTATTTACCTTGCTGGGTCTGGTGTTAGTAGGTCCGACGCTGCATTTCTGGTATTTGTATCTAAGCAAACTGGTCACGTTGCCTGGAGCATCAGGTGCATTCATGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTATATTTATTGGAGTTTTCTTATCGGCATTGATGACACTGGAGGGAAGACCTTCCCAAATTGTACCCAAGCTACAACAGGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAACTGTGGATACCTTTCCAATTTCTTAACTTTCGGTTTGTACCACAGCAATTCCAGGTTCTTACTGCTAATGTTATTGCTTTGGCATGGAATGTTATCCTCTCGTTTAAAGCTCACAAAGAGGTTCTTCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

278

Amino Acids

30.48

Weight (kDa)

9.51

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 209 - 268 1.4e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 200, 246
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 120, 151
AfaI GTAC 4 cut(s) 37, 143, 654, 741
AfiI CCNNNNNNNGG 1 cut(s) 213
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 830
AjiI CACGTC 1 cut(s) 439
AjnI CCWGG 2 cut(s) 535, 753
AluBI AGCT 4 cut(s) 362, 409, 661, 812
AluI AGCT 4 cut(s) 362, 409, 661, 812
AlwI GGATC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 120, 151
Asp700I GAANNNNTTC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 216, 485
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 216, 485
BbsI GAAGAC 1 cut(s) 643
BbvI GCAGC 1 cut(s) 480
BccI CCATC 2 cut(s) 206, 224
BciT130I CCWGG 2 cut(s) 537, 755
BciVI GTATCC 2 cut(s) 354, 702
BclI TGATCA 2 cut(s) 418, 571
BfrI CTTAAG 1 cut(s) 49
BfuI GTATCC 2 cut(s) 354, 702
BisI GCNGC 1 cut(s) 494
BlsI GCNGC 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 537, 755
Bme18I GGWCC 2 cut(s) 216, 485
BmgBI CACGTC 1 cut(s) 439
BmgT120I GGNCC 2 cut(s) 216, 485
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 537, 755
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 2 cut(s) 558, 650
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 528, 633
BseBI CCWGG 2 cut(s) 537, 755
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 528, 633
BseXI GCAGC 1 cut(s) 480
BseYI CCCAGC 1 cut(s) 466
BsiSI CCGG 2 cut(s) 156, 175
BsiWI CGTACG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 213
BsmI GAATGC 2 cut(s) 94, 551
Bsp143I GATC 4 cut(s) 105, 328, 418, 571
BspACI CCGC 2 cut(s) 200, 246
BspCNI CTCAG 1 cut(s) 122
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 336
BspTI CTTAAG 1 cut(s) 49
BsrI ACTGG 2 cut(s) 528, 633
BssMI GATC 4 cut(s) 105, 328, 418, 571
Bst2UI CCWGG 2 cut(s) 537, 755
Bst4CI ACNGT 1 cut(s) 705
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 407, 690
BstDEI CTNAG 2 cut(s) 109, 515
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 4 cut(s) 108, 331, 421, 574
BstMBI GATC 4 cut(s) 105, 328, 418, 571
BstMWI GCNNNNNNNGC 2 cut(s) 548, 689
BstNI CCWGG 2 cut(s) 537, 755
BstSCI CCNGG 2 cut(s) 535, 753
BstV1I GCAGC 1 cut(s) 480
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 2 cut(s) 354, 702
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 626
Cac8I GCNNGC 2 cut(s) 407, 690
CciI TCATGA 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 216, 485
CseI GACGC 2 cut(s) 339, 499
Csp6I GTAC 4 cut(s) 36, 142, 653, 740
CspCI CAANNNNNGTGG 2 cut(s) 653, 688
CviAII CATG 5 cut(s) 257, 318, 429, 556, 786
CviJI RGCY 5 cut(s) 362, 409, 561, 661, 812
CviKI_1 RGCY 5 cut(s) 362, 409, 561, 661, 812
CviQI GTAC 4 cut(s) 36, 142, 653, 740
DdeI CTNAG 2 cut(s) 109, 515
DpnI GATC 4 cut(s) 107, 330, 420, 573
DpnII GATC 4 cut(s) 105, 328, 418, 571
DraI TTTAAA 1 cut(s) 808
EciI GGCGGA 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 216, 485
EcoRI GAATTC 2 cut(s) 120, 151
EcoRII CCWGG 2 cut(s) 535, 753
FaeI CATG 5 cut(s) 260, 321, 432, 559, 789
FaiI YATR 7 cut(s) 258, 319, 356, 430, 557, 593, 787
FalI AAGNNNNNCTT 1 cut(s) 810
FatI CATG 5 cut(s) 256, 317, 428, 555, 785
FbaI TGATCA 2 cut(s) 418, 571
Fnu4HI GCNGC 1 cut(s) 494
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 494
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 470
GsuI CTGGAG 2 cut(s) 558, 650
HapII CCGG 2 cut(s) 156, 175
HgaI GACGC 2 cut(s) 339, 499
Hin1II CATG 5 cut(s) 260, 321, 432, 559, 789
HinfI GANTC 2 cut(s) 10, 171
HpaII CCGG 2 cut(s) 156, 175
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 6 cut(s) 126, 150, 195, 208, 366, 489
Hpy188III TCNNGA 2 cut(s) 434, 556
Hpy8I GTNNAC 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 3 cut(s) 190, 572, 651
HpyCH4III ACNGT 1 cut(s) 705
HpyCH4IV ACGT 2 cut(s) 438, 530
HpyCH4V TGCA 5 cut(s) 94, 338, 374, 496, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 689
HpyF3I CTNAG 2 cut(s) 109, 515
HpySE526I ACGT 2 cut(s) 438, 530
Hsp92II CATG 5 cut(s) 260, 321, 432, 559, 789
Ksp22I TGATCA 2 cut(s) 418, 571
Kzo9I GATC 4 cut(s) 105, 328, 418, 571
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 1 cut(s) 551
MaeII ACGT 2 cut(s) 438, 530
MaeIII GTNAC 1 cut(s) 526
MalI GATC 4 cut(s) 107, 330, 420, 573
MboI GATC 4 cut(s) 105, 328, 418, 571
MboII GAAGA 3 cut(s) 323, 648, 818
MflI RGATCY 1 cut(s) 328
MluCI AATT 8 cut(s) 120, 151, 235, 301, 648, 694, 719, 749
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 2 cut(s) 243, 512
MnlI CCTC 9 cut(s) 59, 257, 263, 269, 323, 395, 625, 809, 814
MroXI GAANNNNTTC 1 cut(s) 640
MseI TTAA 4 cut(s) 50, 380, 726, 807
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 2 cut(s) 156, 175
MspR9I CCNGG 2 cut(s) 537, 755
Mva1269I GAATGC 2 cut(s) 94, 551
MvaI CCWGG 2 cut(s) 537, 755
MwoI GCNNNNNNNGC 2 cut(s) 548, 689
NdeII GATC 4 cut(s) 105, 328, 418, 571
NlaIII CATG 5 cut(s) 260, 321, 432, 559, 789
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 555
PctI GAATGC 2 cut(s) 94, 551
PdmI GAANNNNTTC 1 cut(s) 640
PfeI GAWTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 141
PkrI GCNGC 1 cut(s) 495
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 535, 753
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 2 cut(s) 535, 753
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 216, 485
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 37, 143, 654, 741
RsaNI GTAC 4 cut(s) 36, 142, 653, 740
SaqAI TTAA 4 cut(s) 50, 380, 726, 807
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 4 cut(s) 105, 328, 418, 571
Sau96I GGNCC 2 cut(s) 216, 485
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 537, 755
SfaNI GCATC 1 cut(s) 551
SinI GGWCC 2 cut(s) 216, 485
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 8 cut(s) 120, 151, 235, 301, 648, 694, 719, 749
SsiI CCGC 2 cut(s) 200, 246
StyD4I CCNGG 2 cut(s) 535, 753
TaaI ACNGT 1 cut(s) 705
TaiI ACGT 2 cut(s) 441, 533
TaqI TCGA 1 cut(s) 118
TasI AATT 8 cut(s) 120, 151, 235, 301, 648, 694, 719, 749
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 50, 380, 726, 807
Tru9I TTAA 4 cut(s) 50, 380, 726, 807
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 1 cut(s) 544
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 633
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 216, 485
XapI RAATTY 2 cut(s) 120, 151
XmnI GAANNNNTTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.