Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Forward (+)

6779841 .. 6782501

Gene Structure 2661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCTTGCTCTCTTCCTCTCTTCTTCTTCGTATCCAACTCTCTCTTTCCTCTCCAGATCAGTAACTCTAAACTTAGCCAGAACAACAACACTCTCAGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTCGAAAACTCCGAAATCTACCGATCCATTCTCACCCACCTCCGCTTTCGAATCTCTGAAAACCCTAATTCCAGTAATCCCTAATCACTCAACACCTTCCCCTGATTTTAAAGTCCTTCCCTTTAGCAAGGGTCGTCCACTGGTGTTCTCAAGCGGTGGAGATGCTAATACGACGCCGATTTGGCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCAAGTTGTGGGGTTGATCTGAATGAGGACTCACTCGTGTATTTAGGACCCAAGTTGGAAGAAGATTTGGTGTATTGGGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGTAGGAAGTTGTGTTTTGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGAGTTGGCTATTGCCGGCAATGCCAGGGCGTTACTTGAATGGCACAACGTGTCACAATTTTGTGGATCATGTGGAAGTAAAACTTTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAGACGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGATCCGGTGGTTATAATGTTAGTTATTGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTGGAGTTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGAAACATGGGAAGAGACAGGCATTGAAGTAGGAGATGTTGTATACCACAGCTCTCAGCCTTGGCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTCGGTTTCTTTGCTTTCGCCAAGACGCTCGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGAAGAGGTGAAGAAAGCATTGGCGGTTGCAGAATACAGGAAGGCTCAAAGAACAGCAGCTGCAAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAATCTTGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCGGGGCCATTTGCCATCGCGCACCACCTGATCTCAGCATGGGTAAATCAGGCTCCTGACGATGTTCACTCAAAACAACAAGCGGGTGTCTCTCTCTCAAGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

438

Amino Acids

48.35

Weight (kDa)

5.7

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	89 - 205	5.6e-06	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	209 - 240	2.8e-06	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	246 - 364	1.1e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
AccI	GTMKAC	2 cut(s)	915, 1014
AccII	CGCG	2 cut(s)	774, 1229
AciI	CCGC	7 cut(s)	195, 306, 554, 871, 1076, 1185, 1292
AclWI	GGATC	4 cut(s)	170, 564, 646, 725
AcyI	GRCGYC	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	1 cut(s)	804
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	151, 611, 899, 1174, 1181
AjnI	CCWGG	2 cut(s)	596, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AluBI	AGCT	9 cut(s)	98, 354, 523, 542, 827, 852, 924, 1112, 1192
AluI	AGCT	9 cut(s)	98, 354, 523, 542, 827, 852, 924, 1112, 1192
Alw26I	GTCTC	2 cut(s)	881, 1303
AlwI	GGATC	4 cut(s)	170, 564, 646, 725
AlwNI	CAGNNNCTG	1 cut(s)	1112
Ama87I	CYCGRG	1 cut(s)	1210
AoxI	GGCC	2 cut(s)	935, 1214
ApeKI	GCWGC	3 cut(s)	542, 1109, 1112
AspLEI	GCGC	2 cut(s)	776, 1231
AspS9I	GGNCC	3 cut(s)	425, 944, 1214
AsuC2I	CCSGG	2 cut(s)	1211, 1212
AsuHPI	GGTGA	3 cut(s)	177, 1072, 1199
AsuII	TTCGAA	2 cut(s)	201, 526
AvaI	CYCGRG	1 cut(s)	1210
AvaII	GGWCC	2 cut(s)	425, 944
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	3 cut(s)	529, 1099, 1121
BccI	CCATC	2 cut(s)	470, 1232
BciT130I	CCWGG	2 cut(s)	598, 843
BciVI	GTATCC	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	1211, 1212
BcoDI	GTCTC	2 cut(s)	881, 1303
BfaI	CTAG	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	1128
BisI	GCNGC	3 cut(s)	543, 1110, 1113
BlsI	GCNGC	3 cut(s)	544, 1111, 1114
Bme1390I	CCNGG	4 cut(s)	598, 843, 1211, 1212
Bme18I	GGWCC	2 cut(s)	425, 944
BmeT110I	CYCGRG	1 cut(s)	1210
BmgT120I	GGNCC	3 cut(s)	425, 944, 1214
BmiI	GGNNCC	4 cut(s)	427, 945, 1215, 1263
BmrFI	CCNGG	4 cut(s)	598, 843, 1211, 1212
BmsI	GCATC	4 cut(s)	304, 346, 960, 1024
BpmI	CTGGAG	1 cut(s)	37
Bpu14I	TTCGAA	2 cut(s)	201, 526
BpuEI	CTTGAG	2 cut(s)	286, 1291
BpuMI	CCSGG	2 cut(s)	1211, 1212
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	5 cut(s)	597, 842, 932, 1210, 1211
BsaWI	WCCGGW	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	224, 297
Bse3DI	GCAATG	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	1173
BseBI	CCWGG	2 cut(s)	598, 843
BseDI	CCNNGG	5 cut(s)	597, 842, 932, 1210, 1211
BseGI	GGATG	2 cut(s)	481, 577
BseJI	GATNNNNATC	1 cut(s)	1173
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	4 cut(s)	108, 705, 941, 1257
BseNI	ACTGG	2 cut(s)	224, 297
BseXI	GCAGC	3 cut(s)	529, 1099, 1121
Bsh1236I	CGCG	2 cut(s)	774, 1229
BshFI	GGCC	2 cut(s)	937, 1216
BsiHKCI	CYCGRG	1 cut(s)	1210
BsiSI	CCGG	3 cut(s)	588, 734, 1211
BslFI	GGGAC	1 cut(s)	957
BsmAI	GTCTC	2 cut(s)	881, 1303
BsmFI	GGGAC	1 cut(s)	957
BsnI	GGCC	2 cut(s)	937, 1216
BsoBI	CYCGRG	1 cut(s)	1210
Bsp119I	TTCGAA	2 cut(s)	201, 526
BspACI	CCGC	7 cut(s)	195, 306, 554, 871, 1076, 1185, 1292
BspANI	GGCC	2 cut(s)	937, 1216
BspCNI	CTCAG	4 cut(s)	107, 704, 940, 1256
BspFNI	CGCG	2 cut(s)	774, 1229
BspLI	GGNNCC	4 cut(s)	427, 945, 1215, 1263
BspPI	GGATC	4 cut(s)	170, 564, 646, 725
BspT104I	TTCGAA	2 cut(s)	201, 526
BsrDI	GCAATG	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	224, 297
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	5 cut(s)	597, 842, 932, 1210, 1211
BssNAI	GTATAC	1 cut(s)	916
BssNI	GRCGYC	1 cut(s)	326
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	932
Bst1107I	GTATAC	1 cut(s)	916
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	598, 843
Bst4CI	ACNGT	1 cut(s)	1049
Bst6I	CTCTTC	6 cut(s)	17, 25, 852, 879, 1017, 1050
BstACI	GRCGYC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstBI	TTCGAA	2 cut(s)	201, 526
BstC8I	GCNNGC	6 cut(s)	6, 139, 589, 788, 956, 1194
BstDEI	CTNAG	6 cut(s)	73, 94, 691, 853, 927, 1243
BstF5I	GGATG	2 cut(s)	481, 577
BstFNI	CGCG	2 cut(s)	774, 1229
BstHHI	GCGC	2 cut(s)	776, 1231
BstMAI	GTCTC	2 cut(s)	881, 1303
BstMWI	GCNNNNNNNGC	4 cut(s)	334, 551, 593, 960
BstNI	CCWGG	2 cut(s)	598, 843
BstNSI	RCATGY	2 cut(s)	705, 958
BstSCI	CCNGG	4 cut(s)	596, 841, 1209, 1210
BstUI	CGCG	2 cut(s)	774, 1229
BstV1I	GCAGC	3 cut(s)	529, 1099, 1121
BstX2I	RGATCY	1 cut(s)	1128
BstYI	RGATCY	1 cut(s)	1128
BstZ17I	GTATAC	1 cut(s)	916
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	937, 1216
BtgZI	GCGATG	1 cut(s)	1210
BtsCI	GGATG	2 cut(s)	481, 577
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	6 cut(s)	6, 139, 589, 788, 956, 1194
CaiI	CAGNNNCTG	1 cut(s)	1112
CfoI	GCGC	2 cut(s)	776, 1231
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	3 cut(s)	425, 944, 1214
Cfr9I	CCCGGG	1 cut(s)	1210
CseI	GACGC	2 cut(s)	334, 1006
Csp6I	GTAC	1 cut(s)	803
CviAII	CATG	7 cut(s)	128, 642, 702, 879, 955, 960, 1248
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	6 cut(s)	73, 94, 691, 853, 927, 1243
DraI	TTTAAA	1 cut(s)	262
DraIII	CACNNNGTG	1 cut(s)	622
Eam1104I	CTCTTC	6 cut(s)	17, 25, 852, 879, 1017, 1050
EarI	CTCTTC	6 cut(s)	17, 25, 852, 879, 1017, 1050
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	932
Eco47I	GGWCC	2 cut(s)	425, 944
Eco88I	CYCGRG	1 cut(s)	1210
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	596, 841
EcoT14I	CCWWGG	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	7 cut(s)	131, 645, 705, 882, 958, 963, 1251
FalI	AAGNNNNNCTT	2 cut(s)	640, 672
FaqI	GGGAC	1 cut(s)	957
FatI	CATG	7 cut(s)	127, 641, 701, 878, 954, 959, 1247
FauI	CCCGC	2 cut(s)	864, 1285
FblI	GTMKAC	2 cut(s)	915, 1014
Fnu4HI	GCNGC	3 cut(s)	543, 1110, 1113
FokI	GGATG	2 cut(s)	488, 584
Fsp4HI	GCNGC	3 cut(s)	543, 1110, 1113
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	2 cut(s)	775, 1230
GluI	GCNGC	3 cut(s)	543, 1110, 1113
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	937, 1216
HapII	CCGG	3 cut(s)	588, 734, 1211
HgaI	GACGC	2 cut(s)	334, 1006
HhaI	GCGC	2 cut(s)	776, 1231
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	7 cut(s)	131, 645, 705, 882, 958, 963, 1251
Hin6I	GCGC	2 cut(s)	774, 1229
HinP1I	GCGC	2 cut(s)	774, 1229
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	4 cut(s)	124, 203, 407, 1156
HpaII	CCGG	3 cut(s)	588, 734, 1211
HphI	GGTGA	3 cut(s)	177, 1072, 1199
Hpy166II	GTNNAC	4 cut(s)	290, 916, 1015, 1276
Hpy188I	TCNGA	5 cut(s)	165, 210, 399, 490, 694
Hpy188III	TCNNGA	5 cut(s)	54, 761, 795, 1178, 1265
Hpy8I	GTNNAC	4 cut(s)	290, 916, 1015, 1276
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	5 cut(s)	142, 258, 278, 669, 1087
HpyCH4III	ACNGT	1 cut(s)	1049
HpyCH4IV	ACGT	3 cut(s)	562, 621, 1011
HpyCH4V	TGCA	3 cut(s)	705, 1082, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	334, 551, 593, 960
HpyF3I	CTNAG	6 cut(s)	73, 94, 691, 853, 927, 1243
HpySE526I	ACGT	3 cut(s)	562, 621, 1011
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	7 cut(s)	131, 645, 705, 882, 958, 963, 1251
HspAI	GCGC	2 cut(s)	774, 1229
KroI	GCCGGC	1 cut(s)	587
KroNI	GCCGGC	1 cut(s)	589
LmnI	GCTCC	2 cut(s)	1201, 1267
Lsp1109I	GCAGC	3 cut(s)	529, 1099, 1121
LweI	GCATC	4 cut(s)	304, 346, 960, 1024
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	3 cut(s)	562, 621, 1011
MaeIII	GTNAC	3 cut(s)	61, 603, 624
MfeI	CAATTG	1 cut(s)	965
MflI	RGATCY	1 cut(s)	1128
MluCI	AATT	4 cut(s)	219, 491, 629, 965
MlyI	GAGTC	3 cut(s)	118, 401, 1165
MmeI	TCCRAC	2 cut(s)	59, 414
MroNI	GCCGGC	1 cut(s)	587
MseI	TTAA	2 cut(s)	261, 782
MspA1I	CMGCKG	1 cut(s)	1112
MspI	CCGG	3 cut(s)	588, 734, 1211
MspR9I	CCNGG	4 cut(s)	598, 843, 1211, 1212
MunI	CAATTG	1 cut(s)	965
MvaI	CCWGG	2 cut(s)	598, 843
MvnI	CGCG	2 cut(s)	774, 1229
MwoI	GCNNNNNNNGC	4 cut(s)	334, 551, 593, 960
NaeI	GCCGGC	1 cut(s)	589
NciI	CCSGG	2 cut(s)	1211, 1212
NgoMIV	GCCGGC	1 cut(s)	587
NlaIII	CATG	7 cut(s)	131, 645, 705, 882, 958, 963, 1251
NlaIV	GGNNCC	4 cut(s)	427, 945, 1215, 1263
NmuCI	GTSAC	1 cut(s)	624
NspI	RCATGY	2 cut(s)	705, 958
NspV	TTCGAA	2 cut(s)	201, 526
PaeI	GCATGC	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 1008
PdiI	GCCGGC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	544, 1111, 1114
PleI	GAGTC	3 cut(s)	118, 401, 1164
PpsI	GAGTC	3 cut(s)	118, 401, 1164
PpuMI	RGGWCCY	1 cut(s)	425
PsiI	TTATAA	1 cut(s)	743
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	596, 841
PspGI	CCWGG	2 cut(s)	596, 841
PspN4I	GGNNCC	4 cut(s)	427, 945, 1215, 1263
PspPI	GGNCC	3 cut(s)	425, 944, 1214
PspPPI	RGGWCCY	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	1112
PsuI	RGATCY	1 cut(s)	1128
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
SaqAI	TTAA	2 cut(s)	261, 782
SatI	GCNGC	3 cut(s)	543, 1110, 1113
Sau96I	GGNCC	3 cut(s)	425, 944, 1214
SchI	GAGTC	3 cut(s)	118, 401, 1165
ScrFI	CCNGG	4 cut(s)	598, 843, 1211, 1212
SfaNI	GCATC	4 cut(s)	304, 346, 960, 1024
SfuI	TTCGAA	2 cut(s)	201, 526
SinI	GGWCC	2 cut(s)	425, 944
SmaI	CCCGGG	1 cut(s)	1212
SmlI	CTYRAG	2 cut(s)	301, 1306
SmoI	CTYRAG	2 cut(s)	301, 1306
SphI	GCATGC	1 cut(s)	958
Sse9I	AATT	4 cut(s)	219, 491, 629, 965
SsiI	CCGC	7 cut(s)	195, 306, 554, 871, 1076, 1185, 1292
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	4 cut(s)	596, 841, 1209, 1210
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	1 cut(s)	1049
TaiI	ACGT	3 cut(s)	565, 624, 1014
TaqI	TCGA	6 cut(s)	110, 155, 201, 526, 760, 1002
TasI	AATT	4 cut(s)	219, 491, 629, 965
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	261, 782
Tru9I	TTAA	2 cut(s)	261, 782
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	3 cut(s)	542, 1109, 1112
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	1 cut(s)	128
TspMI	CCCGGG	1 cut(s)	1210
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	425, 944
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	2 cut(s)	705, 958
XmaI	CCCGGG	1 cut(s)	1210
XmiI	GTMKAC	2 cut(s)	915, 1014
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.