Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Reverse (-)

3050803 .. 3052725

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCCATAAACCTCCAGTCCCATGCCTTTGCTGGCAATCCTATGAGATCCAAGACCCCAAAACCCAGTGATCCATTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCAACTTTTGGACAATCCCCACTTGCCCTCTTCTTCACCAAGCTTCAAGGTCCTGCCTTTCAGAAAGGGCAGGCCTTTGGCATCAACCATTGGTGGGGTCAGTGATTTGAAGCCAAATTGGTATTTGGGTTGGGTCAGTTTGGCTGATTGTAAAGGCTTGTTGGGTAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATTGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGAGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGTTGGCTGTTGCTGGTCATGCCAGGGCTTTGCTTGAGTGGCACAGTACATCACTGTTTTGTGGACATTGTGGAGAAAAGACAGTCCCCAAGGAAGCTGGGAGACGCAAGCAGTGTTCTAGTGAGCTGTGCAGAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAGAACGACCGTGCTCTGTTGAGTAGACAATCCCGATTTGTACCTAGAATGTGGAGTTGCTTAGCTGGGTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGAGAGAAACATGGGAGGAAACTGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGACCAAGTAGCATGCCATGCCAGTTGATGGTTGGCTTCTTTGCATATGCCAAATCACTTGAAATAAATGTCGACAAGGAAGAGTTGGAAGACGCCCAGTGGCACAGTAGAGAAGATGTAAAAAAAGCTTTGACATTTACTGAATATGAGAAGGCACAGAAAACAGCGGCAGAGAAGGTTGAGCAGATGTGCAGGGGCGTTGAGAAAGGGCAGAACTTTTCTGCAGACTACAATGTGGAAAGTGGCGAACTTACTCCCATGTTTATACCGGGACCATTTGCAATTGCCCATCACCTCATCTCTTCTTGGGTCTATCAGGATGCACCAGACAGTGTTGATACACGTCCAAAACATCCTTGTGGTTCAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

405

Amino Acids

44.86

Weight (kDa)

5.5

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	54 - 171	2.1e-06	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	173 - 206	3.4e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	212 - 323	3.1e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	868
AccI	GTMKAC	3 cut(s)	615, 685, 912
AciI	CCGC	4 cut(s)	341, 610, 761, 1007
AclWI	GGATC	3 cut(s)	42, 65, 623
AcsI	RAATTY	1 cut(s)	1207
AcyI	GRCGYC	1 cut(s)	933
AfaI	GTAC	2 cut(s)	520, 702
AfiI	CCNNNNNNNGG	3 cut(s)	204, 392, 868
AflIII	ACRYGT	1 cut(s)	1181
AgsI	TTSAA	6 cut(s)	157, 220, 324, 797, 902, 1206
AjiI	CACGTC	1 cut(s)	1184
AjnI	CCWGG	2 cut(s)	494, 739
AluBI	AGCT	8 cut(s)	153, 421, 569, 598, 725, 750, 822, 968
AluI	AGCT	8 cut(s)	153, 421, 569, 598, 725, 750, 822, 968
Alw21I	GWGCWC	2 cut(s)	423, 676
Alw26I	GTCTC	2 cut(s)	92, 568
AlwI	GGATC	3 cut(s)	42, 65, 623
AoxI	GGCC	3 cut(s)	182, 326, 833
ApoI	RAATTY	1 cut(s)	1207
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspS9I	GGNCC	3 cut(s)	160, 842, 1112
AsuC2I	CCSGG	1 cut(s)	1110
AsuHPI	GGTGA	5 cut(s)	72, 138, 311, 775, 1124
AvaII	GGWCC	3 cut(s)	160, 842, 1112
AxyI	CCTNAGG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	2 cut(s)	423, 676
BccI	CCATC	3 cut(s)	368, 862, 1137
BciT130I	CCWGG	2 cut(s)	496, 741
BcnI	CCSGG	1 cut(s)	1110
BcoDI	GTCTC	2 cut(s)	92, 568
BfaI	CTAG	2 cut(s)	591, 705
BfmI	CTRYAG	1 cut(s)	1062
BisI	GCNGC	1 cut(s)	1008
BlpI	GCTNAGC	1 cut(s)	721
BlsI	GCNGC	1 cut(s)	1009
Bme1390I	CCNGG	3 cut(s)	496, 741, 1110
Bme18I	GGWCC	3 cut(s)	160, 842, 1112
BmgBI	CACGTC	1 cut(s)	1184
BmgT120I	GGNCC	3 cut(s)	160, 842, 1112
BmiI	GGNNCC	2 cut(s)	384, 1113
BmrFI	CCNGG	3 cut(s)	496, 741, 1110
BmrI	ACTGGG	2 cut(s)	60, 931
BmsI	GCATC	3 cut(s)	200, 328, 1150
BmuI	ACTGGG	2 cut(s)	60, 931
BpiI	GAAGAC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	721
BpuEI	CTTGAG	3 cut(s)	89, 116, 527
BpuMI	CCSGG	1 cut(s)	1110
BsaHI	GRCGYC	1 cut(s)	933
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	495, 561, 830
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 392, 868
Bse1I	ACTGG	5 cut(s)	16, 66, 793, 862, 937
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	496, 741
BseDI	CCNNGG	3 cut(s)	495, 561, 830
BseGI	GGATG	4 cut(s)	343, 379, 1165, 1192
BseLI	CCNNNNNNNGG	3 cut(s)	204, 392, 868
BseMII	CTCAG	2 cut(s)	321, 436
BseNI	ACTGG	5 cut(s)	16, 66, 793, 862, 937
BseRI	GAGGAG	1 cut(s)	347
BseYI	CCCAGC	2 cut(s)	569, 725
BsgI	GTGCAG	2 cut(s)	622, 1051
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	3 cut(s)	184, 328, 835
BsiEI	CGRYCG	1 cut(s)	670
BsiHKAI	GWGCWC	2 cut(s)	423, 676
BsiSI	CCGG	2 cut(s)	632, 1109
BslFI	GGGAC	3 cut(s)	4, 542, 1125
BslI	CCNNNNNNNGG	3 cut(s)	204, 392, 868
BsmAI	GTCTC	2 cut(s)	92, 568
BsmBI	CGTCTC	1 cut(s)	568
BsmFI	GGGAC	3 cut(s)	4, 542, 1125
BsnI	GGCC	3 cut(s)	184, 328, 835
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	423, 676
Bsp143I	GATC	3 cut(s)	47, 70, 628
Bsp1720I	GCTNAGC	1 cut(s)	721
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	4 cut(s)	341, 610, 761, 1007
BspANI	GGCC	3 cut(s)	184, 328, 835
BspCNI	CTCAG	2 cut(s)	322, 435
BspLI	GGNNCC	2 cut(s)	384, 1113
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	3 cut(s)	42, 65, 623
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	5 cut(s)	16, 66, 793, 862, 937
BssECI	CCNNGG	3 cut(s)	495, 561, 830
BssMI	GATC	3 cut(s)	47, 70, 628
BssNI	GRCGYC	1 cut(s)	933
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	561, 830
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	496, 741
Bst4CI	ACNGT	6 cut(s)	518, 528, 556, 671, 947, 1172
Bst6I	CTCTTC	4 cut(s)	145, 761, 915, 1147
BstACI	GRCGYC	1 cut(s)	933
BstAPI	GCANNNNNTGC	1 cut(s)	858
BstC8I	GCNNGC	4 cut(s)	34, 182, 581, 854
BstDEI	CTNAG	5 cut(s)	330, 366, 422, 721, 751
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	4 cut(s)	343, 379, 1165, 1192
BstKTI	GATC	3 cut(s)	50, 73, 631
BstMAI	GTCTC	2 cut(s)	92, 568
BstMBI	GATC	3 cut(s)	47, 70, 628
BstMCI	CGRYCG	1 cut(s)	670
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 491, 511, 858
BstNI	CCWGG	2 cut(s)	496, 741
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	494, 739, 1108
BstSFI	CTRYAG	1 cut(s)	1062
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	184, 328, 835
BtgI	CCRYGG	1 cut(s)	830
BtrI	CACGTC	1 cut(s)	1184
BtsCI	GGATG	4 cut(s)	343, 379, 1165, 1192
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	6 cut(s)	73, 217, 524, 590, 944, 1177
Cac8I	GCNNGC	4 cut(s)	34, 182, 581, 854
Cfr13I	GGNCC	3 cut(s)	160, 842, 1112
CseI	GACGC	2 cut(s)	585, 941
Csp6I	GTAC	2 cut(s)	519, 701
CviAII	CATG	7 cut(s)	23, 491, 777, 831, 853, 858, 1099
CviQI	GTAC	2 cut(s)	519, 701
DdeI	CTNAG	5 cut(s)	330, 366, 422, 721, 751
DpnI	GATC	3 cut(s)	49, 72, 630
DpnII	GATC	3 cut(s)	47, 70, 628
Eam1104I	CTCTTC	4 cut(s)	145, 761, 915, 1147
EarI	CTCTTC	4 cut(s)	145, 761, 915, 1147
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	561, 830
Eco147I	AGGCCT	2 cut(s)	184, 328
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	3 cut(s)	160, 842, 1112
Eco53kI	GAGCTC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	494, 739
EcoT14I	CCWWGG	2 cut(s)	561, 830
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	561, 830
Esp3I	CGTCTC	1 cut(s)	568
FaeI	CATG	7 cut(s)	26, 494, 780, 834, 856, 861, 1102
FaqI	GGGAC	3 cut(s)	4, 542, 1125
FatI	CATG	7 cut(s)	22, 490, 776, 830, 852, 857, 1098
FauI	CCCGC	1 cut(s)	603
FauNDI	CATATG	1 cut(s)	886
FblI	GTMKAC	3 cut(s)	615, 685, 912
Fnu4HI	GCNGC	1 cut(s)	1008
FokI	GGATG	4 cut(s)	350, 386, 1172, 1179
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	1008
FspBI	CTAG	2 cut(s)	591, 705
GluI	GCNGC	1 cut(s)	1008
GsaI	CCCAGC	2 cut(s)	573, 729
HaeIII	GGCC	3 cut(s)	184, 328, 835
HapII	CCGG	2 cut(s)	632, 1109
HgaI	GACGC	2 cut(s)	585, 941
Hin1I	GRCGYC	1 cut(s)	933
Hin1II	CATG	7 cut(s)	26, 494, 780, 834, 856, 861, 1102
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HindIII	AAGCTT	3 cut(s)	151, 748, 966
HinfI	GANTC	2 cut(s)	109, 302
HpaII	CCGG	2 cut(s)	632, 1109
HphI	GGTGA	5 cut(s)	72, 138, 311, 775, 1124
Hpy166II	GTNNAC	4 cut(s)	536, 616, 686, 913
Hpy188I	TCNGA	2 cut(s)	173, 425
Hpy188III	TCNNGA	4 cut(s)	106, 386, 693, 1157
Hpy8I	GTNNAC	4 cut(s)	536, 616, 686, 913
HpyAV	CCTTC	2 cut(s)	985, 1009
HpyCH4III	ACNGT	6 cut(s)	518, 528, 556, 671, 947, 1172
HpyCH4IV	ACGT	1 cut(s)	1183
HpyCH4V	TGCA	6 cut(s)	603, 884, 1032, 1064, 1121, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 491, 511, 858
HpyF3I	CTNAG	5 cut(s)	330, 366, 422, 721, 751
HpySE526I	ACGT	1 cut(s)	1183
Hsp92I	GRCGYC	1 cut(s)	933
Hsp92II	CATG	7 cut(s)	26, 494, 780, 834, 856, 861, 1102
Kzo9I	GATC	3 cut(s)	47, 70, 628
LweI	GCATC	3 cut(s)	200, 328, 1150
MaeI	CTAG	2 cut(s)	591, 705
MaeII	ACGT	1 cut(s)	1183
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	49, 72, 630
MboI	GATC	3 cut(s)	47, 70, 628
MboII	GAAGA	8 cut(s)	132, 135, 767, 778, 932, 941, 965, 1134
MfeI	CAATTG	2 cut(s)	404, 1122
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	2 cut(s)	423, 676
MluCI	AATT	6 cut(s)	226, 277, 389, 404, 1122, 1207
MlyI	GAGTC	2 cut(s)	103, 296
MmeI	TCCRAC	2 cut(s)	820, 906
MslI	CAYNNNNRTG	1 cut(s)	1197
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	2 cut(s)	632, 1109
MspR9I	CCNGG	3 cut(s)	496, 741, 1110
MunI	CAATTG	2 cut(s)	404, 1122
MvaI	CCWGG	2 cut(s)	496, 741
MwoI	GCNNNNNNNGC	4 cut(s)	476, 491, 511, 858
NciI	CCSGG	1 cut(s)	1110
NcoI	CCATGG	1 cut(s)	830
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	3 cut(s)	47, 70, 628
NlaIII	CATG	7 cut(s)	26, 494, 780, 834, 856, 861, 1102
NlaIV	GGNNCC	2 cut(s)	384, 1113
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	856
PaeI	GCATGC	1 cut(s)	856
PceI	AGGCCT	2 cut(s)	184, 328
PflMI	CCANNNNNTGG	1 cut(s)	868
PkrI	GCNGC	1 cut(s)	1009
PleI	GAGTC	2 cut(s)	103, 296
PpsI	GAGTC	2 cut(s)	103, 296
PpuMI	RGGWCCY	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	494, 739
PspFI	CCCAGC	2 cut(s)	569, 725
PspGI	CCWGG	2 cut(s)	494, 739
PspN4I	GGNNCC	2 cut(s)	384, 1113
PspPI	GGNCC	3 cut(s)	160, 842, 1112
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	520, 702
RsaNI	GTAC	2 cut(s)	519, 701
RseI	CAYNNNNRTG	1 cut(s)	1197
SacI	GAGCTC	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	911
SatI	GCNGC	1 cut(s)	1008
Sau3AI	GATC	3 cut(s)	47, 70, 628
Sau96I	GGNCC	3 cut(s)	160, 842, 1112
SchI	GAGTC	2 cut(s)	103, 296
ScrFI	CCNGG	3 cut(s)	496, 741, 1110
SduI	GDGCHC	2 cut(s)	423, 676
SfaNI	GCATC	3 cut(s)	200, 328, 1150
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	3 cut(s)	160, 842, 1112
SmiMI	CAYNNNNRTG	1 cut(s)	1197
SmlI	CTYRAG	3 cut(s)	95, 104, 506
SmoI	CTYRAG	3 cut(s)	95, 104, 506
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	6 cut(s)	226, 277, 389, 404, 1122, 1207
SseBI	AGGCCT	2 cut(s)	184, 328
SsiI	CCGC	4 cut(s)	341, 610, 761, 1007
SspMI	CTAG	2 cut(s)	591, 705
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	2 cut(s)	184, 328
StyD4I	CCNGG	3 cut(s)	494, 739, 1108
StyI	CCWWGG	2 cut(s)	561, 830
TaaI	ACNGT	6 cut(s)	518, 528, 556, 671, 947, 1172
TaiI	ACGT	1 cut(s)	1186
TaqI	TCGA	1 cut(s)	912
TasI	AATT	6 cut(s)	226, 277, 389, 404, 1122, 1207
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	1 cut(s)	1010
TscAI	CASTG	6 cut(s)	73, 217, 531, 590, 944, 1177
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	6 cut(s)	73, 217, 531, 590, 944, 1177
Van91I	CCANNNNNTGG	1 cut(s)	868
VpaK11BI	GGWCC	3 cut(s)	160, 842, 1112
XapI	RAATTY	1 cut(s)	1207
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	29, 869
XmiI	GTMKAC	3 cut(s)	615, 685, 912
XspI	CTAG	2 cut(s)	591, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.