Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029975.1

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Forward (+)

8205 .. 8714

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029975.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtccataaacctccagtcccatgcctttgctggcaatcctatgagatccaagaccccaaaacccagtgacccattttcaccaacccaagcccttgagaccctcaagactcagcttttggacaatccccacttgccctcttcttcaccaagcttcaaggtcctgcctttcagaaagggcaggcctttggcctcaaccatcggtgggatcagtgatttgaagccgacatggtatctgggttggatcagtttggctgattgtaaaggcttgttgggcaattgtggggttgagttgagtggtgactcattggtgtatctgggttcaaggcctgaggaggatgcggtttattgggctattgatgtgtctaaggaggatggtgtggttcctgaattgggtgggaagcaattgtgttttgttgagctcagaacactgatggtggctactgattgggctgacgaaagggctatggcggagttggccgttgctggccatgtaagtgcttgtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

169

Amino Acids

18.14

Weight (kDa)

5.33

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	341, 470
AclWI	GGATC	3 cut(s)	42, 215, 251
AcoI	YGGCCR	2 cut(s)	477, 487
AfiI	CCNNNNNNNGG	2 cut(s)	204, 392
AgsI	TTSAA	3 cut(s)	157, 220, 324
AluBI	AGCT	3 cut(s)	115, 153, 421
AluI	AGCT	3 cut(s)	115, 153, 421
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	42, 215, 251
AoxI	GGCC	5 cut(s)	182, 189, 326, 477, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	72, 138, 311
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	3 cut(s)	206, 368, 427
BceAI	ACGGC	1 cut(s)	464
BcoDI	GTCTC	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	89, 116
BsaI	GGTCTC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 392
Bse1I	ACTGG	2 cut(s)	16, 66
Bse21I	CCTNAGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	343, 379
BseLI	CCNNNNNNNGG	2 cut(s)	204, 392
BseMII	CTCAG	3 cut(s)	125, 321, 436
BseNI	ACTGG	2 cut(s)	16, 66
BseRI	GAGGAG	1 cut(s)	347
BshFI	GGCC	5 cut(s)	184, 191, 328, 479, 489
BsiHKAI	GWGCWC	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	204, 392
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	5 cut(s)	184, 191, 328, 479, 489
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	47, 207, 243
BspACI	CCGC	2 cut(s)	341, 470
BspANI	GGCC	5 cut(s)	184, 191, 328, 479, 489
BspCNI	CTCAG	3 cut(s)	124, 322, 435
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	42, 215, 251
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	16, 66
BssMI	GATC	3 cut(s)	47, 207, 243
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	34, 182, 487
BstDEI	CTNAG	4 cut(s)	111, 330, 366, 422
BstF5I	GGATG	2 cut(s)	343, 379
BstKTI	GATC	3 cut(s)	50, 210, 246
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	47, 207, 243
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 476
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	5 cut(s)	184, 191, 328, 479, 489
BtsCI	GGATG	2 cut(s)	343, 379
BtsIMutI	CAGTG	3 cut(s)	73, 217, 428
Cac8I	GCNNGC	3 cut(s)	34, 182, 487
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	3 cut(s)	23, 228, 491
DdeI	CTNAG	4 cut(s)	111, 330, 366, 422
DpnI	GATC	3 cut(s)	49, 209, 245
DpnII	GATC	3 cut(s)	47, 207, 243
EaeI	YGGCCR	2 cut(s)	477, 487
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	421
Eco147I	AGGCCT	2 cut(s)	184, 328
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	421
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	3 cut(s)	26, 231, 494
FaiI	YATR	6 cut(s)	8, 24, 44, 229, 467, 492
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	22, 227, 490
FokI	GGATG	2 cut(s)	350, 386
FriOI	GRGCYC	1 cut(s)	423
HaeIII	GGCC	5 cut(s)	184, 191, 328, 479, 489
Hin1II	CATG	3 cut(s)	26, 231, 494
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	2 cut(s)	109, 302
HphI	GGTGA	3 cut(s)	72, 138, 311
Hpy188I	TCNGA	2 cut(s)	173, 425
Hpy188III	TCNNGA	2 cut(s)	106, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 476
HpyF3I	CTNAG	4 cut(s)	111, 330, 366, 422
Hsp92II	CATG	3 cut(s)	26, 231, 494
Kzo9I	GATC	3 cut(s)	47, 207, 243
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	68, 299
MalI	GATC	3 cut(s)	49, 209, 245
MboI	GATC	3 cut(s)	47, 207, 243
MboII	GAAGA	2 cut(s)	132, 135
MfeI	CAATTG	2 cut(s)	277, 404
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	423
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	3 cut(s)	277, 389, 404
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	103, 296
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	23, 113, 148, 202, 325, 328, 364
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	489
MunI	CAATTG	2 cut(s)	277, 404
MwoI	GCNNNNNNNGC	2 cut(s)	273, 476
NdeII	GATC	3 cut(s)	47, 207, 243
NlaIII	CATG	3 cut(s)	26, 231, 494
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	2 cut(s)	68, 299
PceI	AGGCCT	2 cut(s)	184, 328
PleI	GAGTC	2 cut(s)	103, 296
PpsI	GAGTC	2 cut(s)	103, 296
PpuMI	RGGWCCY	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	508
Sau3AI	GATC	3 cut(s)	47, 207, 243
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	103, 296
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	5 cut(s)	15, 117, 155, 162, 423
SfaNI	GCATC	1 cut(s)	328
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	95, 104
SmoI	CTYRAG	2 cut(s)	95, 104
Sse9I	AATT	3 cut(s)	277, 389, 404
SseBI	AGGCCT	2 cut(s)	184, 328
SsiI	CCGC	2 cut(s)	341, 470
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	2 cut(s)	184, 328
TasI	AATT	3 cut(s)	277, 389, 404
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	3 cut(s)	73, 217, 435
TseFI	GTSAC	2 cut(s)	68, 299
Tsp45I	GTSAC	2 cut(s)	68, 299
TspRI	CASTG	3 cut(s)	73, 217, 435
VpaK11BI	GGWCC	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.