Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Forward (+)

20674229 .. 20676493

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGTCAAGCTTTCTCTCCTCTCTTCTTCCACTCATCTCCTTTCTTTCTGTAGAAAACTTACTGTCCAGACCTTAACCAGAAGAAGTCTTTGTTCTAGTTCGACCACCACCATGTCCATATACCTACAGTCCCATGCCTTTGCTGGCAATCCTCTGATACCCAAGACACCAAAATCAAGTGACCCATTTTCACCAACCCAAGCCTATGAGACCCTCAAAACCCAACTTTTAGACAATACCCACTTGCCCTCTTCTCTCAGTTTCAAGGTTTTGCCCTTCAGAAAGGGCAGGCCTTTAGCTTCCTCCACTGGTGGGACCAGTGATTCCACACCAAATTGGCATCTGGGTTGGATCAGTTTGTCCGAGTGTAAAGGTTTATTGGCCAATTCTGGGGTTGAGCTGAGTGGAGAATCGCTGGTCTATCTGGGTTCGCGGTCGGAGGATGATGTCGTTTATTGGGCCATTGATGTTTCTGGTGAGAGTAGCTTGGTTCCTGAATTGGGTAGCAAGCAATTATGTTTTGTTGAGCTACGAACGCTTATGGTGGCTACTGATTGGGCTGATGCCCGGGCTATGGGGGAGTTGGCTATTGCTGGTCATGCCAGGGCTTTGCTAGAATGGCATAATATATCACTATTTTGTGGACATTGTGGAGGAAAAACAGTCTCCAAGGAAGCTGGGAGGCGGAAGCAATGTTCAAATGAGCTGTGCAGAAAGAGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTCATTGATAGAGAGAACGATCGTGTTCTGCTAAGCAGACAATCTCGATTCGTACCTCGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCAGTGAGGAGAGAAACATGGGAGGAGACCGGTATTGAAGTAGGAGAAGTTGTATATCATAGCTCTCAGCCATGGCCTGTTGGACCAAATAGCATGCCATGCCAGTTGATGGTTGGGTTCTATGCATATGCAAAATCGCTTGAACTAAATGTGGACAAGGAAGAGTTGGAAGATGCTGAGTGGCACAGTAGAGAAGATGTCAAAAAAGCGTTAGCATATGCTGAATACAGGAAGGCACAGCAAACAGCGGCATCAAAGGTAGAACAGATGTGCAAGGGGGTTGAGAAAGGGCAGAACTTTTCTGCAGACTTCAATGTGGAAAGTGGTGAACTTGCACCCATGTTTATACCCGGGCCATTTGCAATTGCCCATCACCTCATCTCTTCTTGGGTCTATCAGGATGCAGGTGATAGTGTCGCAGCACGTCTAAAACAACCTAGTGGTTCTACTTCGAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

443

Amino Acids

48.82

Weight (kDa)

6.29

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1262
Acc36I	ACCTGC	1 cut(s)	1262
AccB7I	CCANNNNNTGG	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	433, 685, 1115
AclWI	GGATC	2 cut(s)	359, 731
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	1321
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	810
AfiI	CCNNNNNNNGG	5 cut(s)	312, 390, 500, 574, 976
AgeI	ACCGGT	1 cut(s)	896
AgsI	TTSAA	5 cut(s)	265, 699, 905, 1010, 1180
AjiI	CACGTC	1 cut(s)	1292
AjnI	CCWGG	2 cut(s)	602, 847
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
Alw26I	GTCTC	3 cut(s)	203, 670, 887
AlwI	GGATC	2 cut(s)	359, 731
Ama87I	CYCGRG	2 cut(s)	567, 1217
AoxI	GGCC	5 cut(s)	290, 381, 459, 941, 1220
ApeKI	GCWGC	1 cut(s)	1286
ApoI	RAATTY	1 cut(s)	1321
AsiGI	ACCGGT	1 cut(s)	896
AspS9I	GGNCC	4 cut(s)	315, 459, 950, 1220
AsuC2I	CCSGG	4 cut(s)	568, 569, 1218, 1219
AsuHPI	GGTGA	5 cut(s)	183, 488, 1205, 1232, 1286
AsuII	TTCGAA	1 cut(s)	1319
AvaI	CYCGRG	2 cut(s)	567, 1217
AvaII	GGWCC	2 cut(s)	315, 950
BalI	TGGCCA	1 cut(s)	383
BauI	CACGAG	1 cut(s)	729
BbvI	GCAGC	1 cut(s)	1298
BccI	CCATC	2 cut(s)	970, 1245
BciT130I	CCWGG	2 cut(s)	604, 849
BcnI	CCSGG	4 cut(s)	568, 569, 1218, 1219
BcoDI	GTCTC	3 cut(s)	203, 670, 887
BfaI	CTAG	3 cut(s)	96, 614, 1305
BfmI	CTRYAG	3 cut(s)	49, 125, 1170
BfuAI	ACCTGC	1 cut(s)	1262
BisI	GCNGC	2 cut(s)	1116, 1287
BlpI	GCTNAGC	2 cut(s)	788, 829
BlsI	GCNGC	2 cut(s)	1117, 1288
Bme1390I	CCNGG	6 cut(s)	568, 569, 604, 849, 1218, 1219
Bme18I	GGWCC	2 cut(s)	315, 950
BmeT110I	CYCGRG	2 cut(s)	567, 1217
BmgBI	CACGTC	1 cut(s)	1292
BmgT120I	GGNCC	4 cut(s)	315, 459, 950, 1220
BmiI	GGNNCC	2 cut(s)	316, 492
BmrFI	CCNGG	6 cut(s)	568, 569, 604, 849, 1218, 1219
BmsI	GCATC	5 cut(s)	349, 553, 1030, 1127, 1258
Bpu1102I	GCTNAGC	2 cut(s)	788, 829
Bpu14I	TTCGAA	1 cut(s)	1319
BpuMI	CCSGG	4 cut(s)	568, 569, 1218, 1219
BsaI	GGTCTC	2 cut(s)	203, 887
BsaJI	CCNNGG	5 cut(s)	567, 603, 669, 938, 1217
BsaWI	WCCGGW	2 cut(s)	739, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	5 cut(s)	312, 390, 500, 574, 976
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	3 cut(s)	313, 318, 970
Bse3DI	GCAATG	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	604, 849
BseDI	CCNNGG	5 cut(s)	567, 603, 669, 938, 1217
BseGI	GGATG	2 cut(s)	448, 1273
BseLI	CCNNNNNNNGG	5 cut(s)	312, 390, 500, 574, 976
BseMI	GCAATG	1 cut(s)	698
BseMII	CTCAG	4 cut(s)	271, 392, 947, 1035
BseNI	ACTGG	3 cut(s)	313, 318, 970
BseRI	GAGGAG	3 cut(s)	8, 889, 905
BseXI	GCAGC	1 cut(s)	1298
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	433
Bsh1285I	CGRYCG	2 cut(s)	437, 778
BshFI	GGCC	5 cut(s)	292, 383, 461, 943, 1222
BshTI	ACCGGT	1 cut(s)	896
BsiEI	CGRYCG	2 cut(s)	437, 778
BsiHKCI	CYCGRG	2 cut(s)	567, 1217
BsiSI	CCGG	4 cut(s)	568, 740, 897, 1218
BslFI	GGGAC	2 cut(s)	115, 328
BslI	CCNNNNNNNGG	5 cut(s)	312, 390, 500, 574, 976
BsmAI	GTCTC	3 cut(s)	203, 670, 887
BsmFI	GGGAC	2 cut(s)	115, 328
BsnI	GGCC	5 cut(s)	292, 383, 461, 943, 1222
Bso31I	GGTCTC	2 cut(s)	203, 887
BsoBI	CYCGRG	2 cut(s)	567, 1217
Bsp119I	TTCGAA	1 cut(s)	1319
Bsp143I	GATC	3 cut(s)	351, 736, 775
Bsp1720I	GCTNAGC	2 cut(s)	788, 829
Bsp19I	CCATGG	1 cut(s)	938
BspACI	CCGC	3 cut(s)	433, 685, 1115
BspANI	GGCC	5 cut(s)	292, 383, 461, 943, 1222
BspCNI	CTCAG	4 cut(s)	270, 393, 946, 1036
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	316, 492
BspMAI	CTGCAG	1 cut(s)	1174
BspMI	ACCTGC	1 cut(s)	1262
BspPI	GGATC	2 cut(s)	359, 731
BspT104I	TTCGAA	1 cut(s)	1319
BspTNI	GGTCTC	2 cut(s)	203, 887
BsrDI	GCAATG	1 cut(s)	698
BsrFI	RCCGGY	1 cut(s)	896
BsrI	ACTGG	3 cut(s)	313, 318, 970
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	5 cut(s)	567, 603, 669, 938, 1217
BssMI	GATC	3 cut(s)	351, 736, 775
BssSI	CACGAG	1 cut(s)	729
BssT1I	CCWWGG	2 cut(s)	669, 938
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	2 cut(s)	604, 849
Bst4CI	ACNGT	4 cut(s)	64, 129, 664, 1055
Bst6I	CTCTTC	4 cut(s)	28, 256, 1023, 1255
BstAPI	GCANNNNNTGC	1 cut(s)	966
BstBI	TTCGAA	1 cut(s)	1319
BstC8I	GCNNGC	4 cut(s)	145, 290, 509, 962
BstDEI	CTNAG	7 cut(s)	257, 401, 788, 829, 859, 933, 1044
BstDSI	CCRYGG	1 cut(s)	938
BstF5I	GGATG	2 cut(s)	448, 1273
BstFNI	CGCG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	354, 739, 778
BstMAI	GTCTC	3 cut(s)	203, 670, 887
BstMBI	GATC	3 cut(s)	351, 736, 775
BstMCI	CGRYCG	2 cut(s)	437, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	535, 599, 619, 966
BstNI	CCWGG	2 cut(s)	604, 849
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	6 cut(s)	566, 567, 602, 847, 1216, 1217
BstSFI	CTRYAG	3 cut(s)	49, 125, 1170
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	1298
BsuRI	GGCC	5 cut(s)	292, 383, 461, 943, 1222
BtgI	CCRYGG	1 cut(s)	938
BtrI	CACGTC	1 cut(s)	1292
BtsCI	GGATG	2 cut(s)	448, 1273
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	3 cut(s)	306, 325, 876
BveI	ACCTGC	1 cut(s)	1262
Cac8I	GCNNGC	4 cut(s)	145, 290, 509, 962
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	4 cut(s)	315, 459, 950, 1220
Cfr9I	CCCGGG	2 cut(s)	567, 1217
Csp6I	GTAC	1 cut(s)	809
CspAI	ACCGGT	1 cut(s)	896
CviAII	CATG	8 cut(s)	112, 134, 599, 885, 939, 961, 966, 1207
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	7 cut(s)	257, 401, 788, 829, 859, 933, 1044
DpnI	GATC	3 cut(s)	353, 738, 777
DpnII	GATC	3 cut(s)	351, 736, 775
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	4 cut(s)	28, 256, 1023, 1255
EarI	CTCTTC	4 cut(s)	28, 256, 1023, 1255
EciI	GGCGGA	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	669, 938
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	2 cut(s)	203, 887
Eco47I	GGWCC	2 cut(s)	315, 950
Eco57I	CTGAAG	1 cut(s)	262
Eco88I	CYCGRG	2 cut(s)	567, 1217
EcoRII	CCWGG	2 cut(s)	602, 847
EcoT14I	CCWWGG	2 cut(s)	669, 938
EcoT22I	ATGCAT	1 cut(s)	994
ErhI	CCWWGG	2 cut(s)	669, 938
FaeI	CATG	8 cut(s)	115, 137, 602, 888, 942, 964, 969, 1210
FaqI	GGGAC	2 cut(s)	115, 328
FatI	CATG	8 cut(s)	111, 133, 598, 884, 938, 960, 965, 1206
FauNDI	CATATG	2 cut(s)	994, 1084
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	2 cut(s)	1116, 1287
FokI	GGATG	2 cut(s)	455, 1280
Fsp4HI	GCNGC	2 cut(s)	1116, 1287
FspBI	CTAG	3 cut(s)	96, 614, 1305
GluI	GCNGC	2 cut(s)	1116, 1287
GsaI	CCCAGC	1 cut(s)	681
HaeIII	GGCC	5 cut(s)	292, 383, 461, 943, 1222
HapII	CCGG	4 cut(s)	568, 740, 897, 1218
Hin1II	CATG	8 cut(s)	115, 137, 602, 888, 942, 964, 969, 1210
HindIII	AAGCTT	2 cut(s)	8, 856
HinfI	GANTC	3 cut(s)	323, 410, 804
HpaII	CCGG	4 cut(s)	568, 740, 897, 1218
HphI	GGTGA	5 cut(s)	183, 488, 1205, 1232, 1286
Hpy166II	GTNNAC	4 cut(s)	644, 724, 1021, 1196
Hpy188I	TCNGA	4 cut(s)	156, 281, 364, 439
Hpy188III	TCNNGA	4 cut(s)	67, 494, 801, 1265
Hpy8I	GTNNAC	4 cut(s)	644, 724, 1021, 1196
HpyAV	CCTTC	2 cut(s)	286, 1093
HpyCH4III	ACNGT	4 cut(s)	64, 129, 664, 1055
HpyCH4IV	ACGT	1 cut(s)	1291
HpyCH4V	TGCA	8 cut(s)	711, 992, 998, 1140, 1172, 1202, 1229, 1271
HpyF10VI	GCNNNNNNNGC	4 cut(s)	535, 599, 619, 966
HpyF3I	CTNAG	7 cut(s)	257, 401, 788, 829, 859, 933, 1044
HpySE526I	ACGT	1 cut(s)	1291
Hsp92II	CATG	8 cut(s)	115, 137, 602, 888, 942, 964, 969, 1210
Kzo9I	GATC	3 cut(s)	351, 736, 775
Lsp1109I	GCAGC	1 cut(s)	1298
LweI	GCATC	5 cut(s)	349, 553, 1030, 1127, 1258
MaeI	CTAG	3 cut(s)	96, 614, 1305
MaeII	ACGT	1 cut(s)	1291
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	353, 738, 777
MboI	GATC	3 cut(s)	351, 736, 775
MboII	GAAGA	9 cut(s)	15, 18, 93, 243, 875, 1040, 1049, 1073, 1242
MfeI	CAATTG	1 cut(s)	1230
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	6 cut(s)	334, 385, 497, 512, 1230, 1321
MluNI	TGGCCA	1 cut(s)	383
MmeI	TCCRAC	4 cut(s)	329, 417, 928, 1014
Mox20I	TGGCCA	1 cut(s)	383
Mph1103I	ATGCAT	1 cut(s)	994
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	1115
MspI	CCGG	4 cut(s)	568, 740, 897, 1218
MspR9I	CCNGG	6 cut(s)	568, 569, 604, 849, 1218, 1219
MunI	CAATTG	1 cut(s)	1230
MvaI	CCWGG	2 cut(s)	604, 849
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	535, 599, 619, 966
NciI	CCSGG	4 cut(s)	568, 569, 1218, 1219
NcoI	CCATGG	1 cut(s)	938
NdeI	CATATG	2 cut(s)	994, 1084
NdeII	GATC	3 cut(s)	351, 736, 775
NlaIII	CATG	8 cut(s)	115, 137, 602, 888, 942, 964, 969, 1210
NlaIV	GGNNCC	2 cut(s)	316, 492
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	994
NspI	RCATGY	1 cut(s)	964
NspV	TTCGAA	1 cut(s)	1319
PaeI	GCATGC	1 cut(s)	964
PaqCI	CACCTGC	1 cut(s)	1262
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	3 cut(s)	323, 410, 804
PflMI	CCANNNNNTGG	1 cut(s)	976
PinAI	ACCGGT	1 cut(s)	896
PkrI	GCNGC	2 cut(s)	1117, 1288
Ple19I	CGATCG	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	602, 847
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	2 cut(s)	602, 847
PspN4I	GGNNCC	2 cut(s)	316, 492
PspPI	GGNCC	4 cut(s)	315, 459, 950, 1220
PstI	CTGCAG	1 cut(s)	1174
PvuI	CGATCG	1 cut(s)	778
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	1116, 1287
Sau3AI	GATC	3 cut(s)	351, 736, 775
Sau96I	GGNCC	4 cut(s)	315, 459, 950, 1220
ScrFI	CCNGG	6 cut(s)	568, 569, 604, 849, 1218, 1219
SfaNI	GCATC	5 cut(s)	349, 553, 1030, 1127, 1258
SfcI	CTRYAG	3 cut(s)	49, 125, 1170
SfuI	TTCGAA	1 cut(s)	1319
SinI	GGWCC	2 cut(s)	315, 950
SmaI	CCCGGG	2 cut(s)	569, 1219
SmiMI	CAYNNNNRTG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	964
SrfI	GCCCGGGC	1 cut(s)	569
Sse9I	AATT	6 cut(s)	334, 385, 497, 512, 1230, 1321
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	433, 685, 1115
SspMI	CTAG	3 cut(s)	96, 614, 1305
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	6 cut(s)	566, 567, 602, 847, 1216, 1217
StyI	CCWWGG	2 cut(s)	669, 938
TaaI	ACNGT	4 cut(s)	64, 129, 664, 1055
TaiI	ACGT	1 cut(s)	1294
TaqI	TCGA	4 cut(s)	101, 802, 814, 1319
TasI	AATT	6 cut(s)	334, 385, 497, 512, 1230, 1321
TauI	GCSGC	1 cut(s)	1118
TfiI	GAWTC	3 cut(s)	323, 410, 804
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	3 cut(s)	313, 325, 876
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	1286
Tsp45I	GTSAC	1 cut(s)	179
TspMI	CCCGGG	2 cut(s)	567, 1217
TspRI	CASTG	3 cut(s)	313, 325, 876
Van91I	CCANNNNNTGG	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	315, 950
XapI	RAATTY	1 cut(s)	1321
XceI	RCATGY	1 cut(s)	964
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 977
XmaI	CCCGGG	2 cut(s)	567, 1217
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	3 cut(s)	96, 614, 1305
Zsp2I	ATGCAT	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.