Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Reverse (-)

2910378 .. 2912972

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTCAAGCTCTCTTCTTCCTCTCTTCATCTCCTAGCTTTATCCAAAAAGCTTGCTCTCCCCAATTTCACAAGAAGAACCCTTTGCTCAATTCCCACCACCATGTCCATAAACCTCCAGTCTCATGCCTTTGCTGGCAATCCTATGAGATCCAAGACCCCAAAACCCAGTGACCCATTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCGACTTTTGGACAATCCCCACTTGCCCTCTTCTTCACCAAGCTTCAAGGTCCTGCCTTTCAGAAAGGGCAGGCCTTTGGCCTCAACCATTGGTGGGATCAGTGATTTGAAGCCAAATTGGTATCTGGGTTGGATCAGTTTGGCTGATTGTAAAGGCTTGTTGGGGAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATGGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGTGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGTTGGCTGTTGCTGGCCATGCCAGGGCTTTGCTTGAGTGGCACAGTACATCACTGTTTTGTGGACATTGTGGAGAAAAGACAGTCCCCAAGGAAGCTGGGAGACGCAAGGAGTGTTCTAGTGAGCTGTGCAGAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAGAATGACCGTGCTCTGTTGAGTAGACAATCCGGATTTGTACCTAGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGAGAGAAACATGGGAGGAGACCGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGCCCAAGTAGCATGCCATGCCAGTTGATGGTTGGTTTCTTTGCATATGCCAAATCACTTGAAATAAATGTCGACAAGGAAGAGTTGGAAGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

346

Amino Acids

38.18

Weight (kDa)

6.21

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	88 - 205	1.1e-06	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	207 - 239	2e-06	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	246 - 342	1.3e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccI	GTMKAC	3 cut(s)	717, 787, 1014
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	3 cut(s)	443, 712, 863
AclWI	GGATC	4 cut(s)	144, 317, 353, 725
AcoI	YGGCCR	1 cut(s)	589
AfaI	GTAC	2 cut(s)	622, 804
AfiI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	5 cut(s)	259, 322, 426, 899, 1004
AjnI	CCWGG	2 cut(s)	596, 841
Alw21I	GWGCWC	2 cut(s)	525, 778
Alw26I	GTCTC	4 cut(s)	126, 194, 670, 881
AlwI	GGATC	4 cut(s)	144, 317, 353, 725
Aor13HI	TCCGGA	1 cut(s)	794
AoxI	GGCC	6 cut(s)	284, 291, 428, 589, 935, 943
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AsiGI	ACCGGT	1 cut(s)	890
AspS9I	GGNCC	2 cut(s)	262, 944
AsuHPI	GGTGA	4 cut(s)	174, 240, 413, 877
AvaII	GGWCC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	525
BauI	CACGAG	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	525, 778
BccI	CCATC	2 cut(s)	470, 964
BciT130I	CCWGG	2 cut(s)	598, 843
BcoDI	GTCTC	4 cut(s)	126, 194, 670, 881
BfaI	CTAG	3 cut(s)	35, 693, 807
BlpI	GCTNAGC	1 cut(s)	823
Bme1390I	CCNGG	2 cut(s)	598, 843
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	262, 944
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	598, 843
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	3 cut(s)	191, 218, 629
BsaI	GGTCTC	2 cut(s)	194, 881
BsaJI	CCNNGG	3 cut(s)	597, 663, 932
BsaWI	WCCGGW	3 cut(s)	733, 794, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	3 cut(s)	118, 168, 964
Bse21I	CCTNAGG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	2 cut(s)	598, 843
BseDI	CCNNGG	3 cut(s)	597, 663, 932
BseGI	GGATG	3 cut(s)	445, 466, 481
BseLI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
BseMII	CTCAG	2 cut(s)	423, 538
BseNI	ACTGG	3 cut(s)	118, 168, 964
BseRI	GAGGAG	2 cut(s)	449, 899
BseYI	CCCAGC	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 945
BshTI	ACCGGT	1 cut(s)	890
BsiHKAI	GWGCWC	2 cut(s)	525, 778
BsiSI	CCGG	3 cut(s)	734, 795, 891
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	4 cut(s)	306, 494, 598, 970
BsmAI	GTCTC	4 cut(s)	126, 194, 670, 881
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	644
BsnI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 945
Bso31I	GGTCTC	2 cut(s)	194, 881
Bsp1286I	GDGCHC	2 cut(s)	525, 778
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	4 cut(s)	149, 309, 345, 730
Bsp1720I	GCTNAGC	1 cut(s)	823
Bsp19I	CCATGG	1 cut(s)	932
BspACI	CCGC	3 cut(s)	443, 712, 863
BspANI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 945
BspCNI	CTCAG	2 cut(s)	424, 537
BspEI	TCCGGA	1 cut(s)	794
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	4 cut(s)	144, 317, 353, 725
BspTNI	GGTCTC	2 cut(s)	194, 881
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	3 cut(s)	118, 168, 964
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	3 cut(s)	597, 663, 932
BssMI	GATC	4 cut(s)	149, 309, 345, 730
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	2 cut(s)	663, 932
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	598, 843
Bst4CI	ACNGT	4 cut(s)	620, 630, 658, 773
Bst6I	CTCTTC	5 cut(s)	19, 30, 247, 863, 1017
BstAPI	GCANNNNNTGC	1 cut(s)	960
BstC8I	GCNNGC	5 cut(s)	54, 136, 284, 589, 956
BstDEI	CTNAG	5 cut(s)	432, 468, 524, 823, 853
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	3 cut(s)	445, 466, 481
BstKTI	GATC	4 cut(s)	152, 312, 348, 733
BstMAI	GTCTC	4 cut(s)	126, 194, 670, 881
BstMBI	GATC	4 cut(s)	149, 309, 345, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	578, 593, 613, 951, 960
BstNI	CCWGG	2 cut(s)	598, 843
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	2 cut(s)	596, 841
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	6 cut(s)	286, 293, 430, 591, 937, 945
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	3 cut(s)	445, 466, 481
BtsIMutI	CAGTG	3 cut(s)	175, 319, 626
Cac8I	GCNNGC	5 cut(s)	54, 136, 284, 589, 956
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	262, 944
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	621, 803
CspAI	ACCGGT	1 cut(s)	890
CviAII	CATG	7 cut(s)	103, 125, 593, 879, 933, 955, 960
CviQI	GTAC	2 cut(s)	621, 803
DdeI	CTNAG	5 cut(s)	432, 468, 524, 823, 853
DpnI	GATC	4 cut(s)	151, 311, 347, 732
DpnII	GATC	4 cut(s)	149, 309, 345, 730
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	5 cut(s)	19, 30, 247, 863, 1017
EarI	CTCTTC	5 cut(s)	19, 30, 247, 863, 1017
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	2 cut(s)	663, 932
Eco147I	AGGCCT	2 cut(s)	286, 430
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	2 cut(s)	194, 881
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	523
Eco81I	CCTNAGG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	596, 841
EcoT14I	CCWWGG	2 cut(s)	663, 932
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	2 cut(s)	663, 932
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	7 cut(s)	106, 128, 596, 882, 936, 958, 963
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	7 cut(s)	102, 124, 592, 878, 932, 954, 959
FauI	CCCGC	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	988
FblI	GTMKAC	3 cut(s)	717, 787, 1014
FokI	GGATG	3 cut(s)	452, 473, 488
FriOI	GRGCYC	1 cut(s)	525
FspBI	CTAG	3 cut(s)	35, 693, 807
GsaI	CCCAGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	6 cut(s)	286, 293, 430, 591, 937, 945
HapII	CCGG	3 cut(s)	734, 795, 891
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	7 cut(s)	106, 128, 596, 882, 936, 958, 963
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	3 cut(s)	50, 253, 850
HinfI	GANTC	2 cut(s)	211, 404
HpaII	CCGG	3 cut(s)	734, 795, 891
HphI	GGTGA	4 cut(s)	174, 240, 413, 877
Hpy166II	GTNNAC	4 cut(s)	638, 718, 788, 1015
Hpy188I	TCNGA	2 cut(s)	275, 527
Hpy188III	TCNNGA	3 cut(s)	208, 488, 795
Hpy8I	GTNNAC	4 cut(s)	638, 718, 788, 1015
HpyAV	CCTTC	1 cut(s)	1025
HpyCH4III	ACNGT	4 cut(s)	620, 630, 658, 773
HpyCH4V	TGCA	2 cut(s)	705, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	578, 593, 613, 951, 960
HpyF3I	CTNAG	5 cut(s)	432, 468, 524, 823, 853
Hsp92II	CATG	7 cut(s)	106, 128, 596, 882, 936, 958, 963
Kpn2I	TCCGGA	1 cut(s)	794
Kzo9I	GATC	4 cut(s)	149, 309, 345, 730
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	35, 693, 807
MaeIII	GTNAC	2 cut(s)	170, 401
MalI	GATC	4 cut(s)	151, 311, 347, 732
MboI	GATC	4 cut(s)	149, 309, 345, 730
MboII	GAAGA	9 cut(s)	6, 9, 17, 87, 234, 237, 869, 880, 1034
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	525, 778
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	6 cut(s)	64, 90, 328, 379, 491, 506
MluNI	TGGCCA	1 cut(s)	591
MlyI	GAGTC	2 cut(s)	205, 398
MmeI	TCCRAC	2 cut(s)	323, 1008
Mox20I	TGGCCA	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	591
MspI	CCGG	3 cut(s)	734, 795, 891
MspR9I	CCNGG	2 cut(s)	598, 843
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	2 cut(s)	598, 843
MwoI	GCNNNNNNNGC	5 cut(s)	578, 593, 613, 951, 960
NcoI	CCATGG	1 cut(s)	932
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	4 cut(s)	149, 309, 345, 730
NlaIII	CATG	7 cut(s)	106, 128, 596, 882, 936, 958, 963
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	2 cut(s)	170, 401
NspI	RCATGY	1 cut(s)	958
PaeI	GCATGC	1 cut(s)	958
PceI	AGGCCT	2 cut(s)	286, 430
PflMI	CCANNNNNTGG	1 cut(s)	970
PinAI	ACCGGT	1 cut(s)	890
PleI	GAGTC	2 cut(s)	205, 398
PpsI	GAGTC	2 cut(s)	205, 398
PpuMI	RGGWCCY	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	262
Psp6I	CCWGG	2 cut(s)	596, 841
PspFI	CCCAGC	1 cut(s)	671
PspGI	CCWGG	2 cut(s)	596, 841
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	262, 944
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	622, 804
RsaNI	GTAC	2 cut(s)	621, 803
RseI	CAYNNNNRTG	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	1013
Sau3AI	GATC	4 cut(s)	149, 309, 345, 730
Sau96I	GGNCC	2 cut(s)	262, 944
SchI	GAGTC	2 cut(s)	205, 398
ScrFI	CCNGG	2 cut(s)	598, 843
SduI	GDGCHC	2 cut(s)	525, 778
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	3 cut(s)	197, 206, 608
SmoI	CTYRAG	3 cut(s)	197, 206, 608
SphI	GCATGC	1 cut(s)	958
Sse9I	AATT	6 cut(s)	64, 90, 328, 379, 491, 506
SseBI	AGGCCT	2 cut(s)	286, 430
SsiI	CCGC	3 cut(s)	443, 712, 863
SspMI	CTAG	3 cut(s)	35, 693, 807
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	2 cut(s)	286, 430
StyD4I	CCNGG	2 cut(s)	596, 841
StyI	CCWWGG	2 cut(s)	663, 932
TaaI	ACNGT	4 cut(s)	620, 630, 658, 773
TaqI	TCGA	2 cut(s)	214, 1014
TasI	AATT	6 cut(s)	64, 90, 328, 379, 491, 506
TatI	WGTACW	1 cut(s)	620
TscAI	CASTG	3 cut(s)	175, 319, 633
TseFI	GTSAC	2 cut(s)	170, 401
Tsp45I	GTSAC	2 cut(s)	170, 401
TspDTI	ATGAA	2 cut(s)	17, 573
TspRI	CASTG	3 cut(s)	175, 319, 633
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	971
XmiI	GTMKAC	3 cut(s)	717, 787, 1014
XspI	CTAG	3 cut(s)	35, 693, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.