Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Reverse (-)

3434813 .. 3439760

Gene Structure 4948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTCAAGCTCTCTCTTCTCTCTTCTTCCTCTCTTCATCTCCTAGCTTTATCCAAAAAGCTTGCTCTCCCCAATTTCACAAGAAGAACCCTTTGCTCAATTCCCACCACCATGTCCATAAACCTCCAGTCCCATGCCTTTGCTGGCAATCCTATGAGATCCAAGACCCCAAAACCCAGTGACCCATTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCGACTTTTGGACAATCCCCACTTGCCCTCTTCTTCACCAAGCTTCAAGGTCCTGCCTTTCAGAAAGGGCAGGCCTTTGGCCTCAACCATCGGTGGGATGAGTGATTTGAAGCCAACATGGTATCTGGGTTGGATCAGTTTGGCTGATTGTAAAGGCTTGTTGGGCAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATTGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGTGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGTTGGCTGTTGCTGGCCATGCCAGGGCTTTGCTTGAGTGGCACAGTACATCACTGTTTTGTGGACATTGTGGAGAAAAGACAGTCCCCAAGGAAGCTGGGAGACGCAAGCAGTGTTCTAGTGAGCTTTGCAAAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAGAATGACCGTGCTCTGTTGAGTAGACAATCCCGATTTGTACCTAGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGAGAGAAACATGGGAGGAGACCGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGGTATGAACATTTCAAACTTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

324

Amino Acids

35.81

Weight (kDa)

8.04

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	91 - 208	5.6e-07	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	210 - 235	1.9e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	249 - 310	3.3e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	947
AccI	GTMKAC	2 cut(s)	726, 796
AciI	CCGC	3 cut(s)	452, 721, 872
AclWI	GGATC	3 cut(s)	153, 362, 734
AcoI	YGGCCR	1 cut(s)	598
AfaI	GTAC	2 cut(s)	631, 813
AfiI	CCNNNNNNNGG	4 cut(s)	315, 503, 607, 947
AgeI	ACCGGT	1 cut(s)	899
AgsI	TTSAA	5 cut(s)	268, 331, 435, 908, 963
AjnI	CCWGG	3 cut(s)	605, 850, 946
Alw21I	GWGCWC	2 cut(s)	534, 787
Alw26I	GTCTC	3 cut(s)	203, 679, 890
AlwI	GGATC	3 cut(s)	153, 362, 734
AoxI	GGCC	5 cut(s)	293, 300, 437, 598, 944
ArsI	GACNNNNNNTTYG	4 cut(s)	211, 243, 708, 740
AsiGI	ACCGGT	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	4 cut(s)	183, 249, 422, 886
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	534, 787
BccI	CCATC	2 cut(s)	317, 479
BciT130I	CCWGG	3 cut(s)	607, 852, 948
BcoDI	GTCTC	3 cut(s)	203, 679, 890
BfaI	CTAG	3 cut(s)	44, 702, 816
BlpI	GCTNAGC	1 cut(s)	832
Bme1390I	CCNGG	3 cut(s)	607, 852, 948
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	3 cut(s)	607, 852, 948
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	832
BpuEI	CTTGAG	3 cut(s)	200, 227, 638
BsaI	GGTCTC	2 cut(s)	203, 890
BsaJI	CCNNGG	3 cut(s)	606, 672, 941
BsaWI	WCCGGW	2 cut(s)	742, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 503, 607, 947
Bse118I	RCCGGY	1 cut(s)	899
Bse1I	ACTGG	2 cut(s)	127, 177
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	3 cut(s)	607, 852, 948
BseDI	CCNNGG	3 cut(s)	606, 672, 941
BseGI	GGATG	3 cut(s)	324, 454, 490
BseLI	CCNNNNNNNGG	4 cut(s)	315, 503, 607, 947
BseMII	CTCAG	2 cut(s)	432, 547
BseNI	ACTGG	2 cut(s)	127, 177
BseRI	GAGGAG	2 cut(s)	458, 908
BseYI	CCCAGC	1 cut(s)	680
BshFI	GGCC	5 cut(s)	295, 302, 439, 600, 946
BshTI	ACCGGT	1 cut(s)	899
BsiHKAI	GWGCWC	2 cut(s)	534, 787
BsiSI	CCGG	2 cut(s)	743, 900
BslFI	GGGAC	2 cut(s)	115, 653
BslI	CCNNNNNNNGG	4 cut(s)	315, 503, 607, 947
BsmAI	GTCTC	3 cut(s)	203, 679, 890
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	2 cut(s)	115, 653
BsnI	GGCC	5 cut(s)	295, 302, 439, 600, 946
Bso31I	GGTCTC	2 cut(s)	203, 890
Bsp1286I	GDGCHC	2 cut(s)	534, 787
Bsp143I	GATC	3 cut(s)	158, 354, 739
Bsp1720I	GCTNAGC	1 cut(s)	832
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	3 cut(s)	452, 721, 872
BspANI	GGCC	5 cut(s)	295, 302, 439, 600, 946
BspCNI	CTCAG	2 cut(s)	433, 546
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	3 cut(s)	153, 362, 734
BspTNI	GGTCTC	2 cut(s)	203, 890
BsrFI	RCCGGY	1 cut(s)	899
BsrI	ACTGG	2 cut(s)	127, 177
BssAI	RCCGGY	1 cut(s)	899
BssECI	CCNNGG	3 cut(s)	606, 672, 941
BssMI	GATC	3 cut(s)	158, 354, 739
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	672, 941
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	607, 852, 948
Bst4CI	ACNGT	4 cut(s)	629, 639, 667, 782
Bst6I	CTCTTC	5 cut(s)	21, 28, 39, 256, 872
BstC8I	GCNNGC	5 cut(s)	63, 145, 293, 598, 692
BstDEI	CTNAG	5 cut(s)	441, 477, 533, 832, 862
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	324, 454, 490
BstKTI	GATC	3 cut(s)	161, 357, 742
BstMAI	GTCTC	3 cut(s)	203, 679, 890
BstMBI	GATC	3 cut(s)	158, 354, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	384, 587, 602, 622
BstNI	CCWGG	3 cut(s)	607, 852, 948
BstSCI	CCNGG	3 cut(s)	605, 850, 946
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	5 cut(s)	295, 302, 439, 600, 946
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	324, 454, 490
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	3 cut(s)	184, 635, 701
Cac8I	GCNNGC	5 cut(s)	63, 145, 293, 598, 692
Cfr10I	RCCGGY	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	630, 812
CspAI	ACCGGT	1 cut(s)	899
CviAII	CATG	6 cut(s)	112, 134, 339, 602, 888, 942
CviQI	GTAC	2 cut(s)	630, 812
DdeI	CTNAG	5 cut(s)	441, 477, 533, 832, 862
DpnI	GATC	3 cut(s)	160, 356, 741
DpnII	GATC	3 cut(s)	158, 354, 739
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	5 cut(s)	21, 28, 39, 256, 872
EarI	CTCTTC	5 cut(s)	21, 28, 39, 256, 872
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	672, 941
Eco147I	AGGCCT	2 cut(s)	295, 439
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	2 cut(s)	203, 890
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	532
Eco81I	CCTNAGG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	3 cut(s)	605, 850, 946
EcoT14I	CCWWGG	2 cut(s)	672, 941
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	672, 941
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	6 cut(s)	115, 137, 342, 605, 891, 945
FaqI	GGGAC	2 cut(s)	115, 653
FatI	CATG	6 cut(s)	111, 133, 338, 601, 887, 941
FauI	CCCGC	1 cut(s)	714
FblI	GTMKAC	2 cut(s)	726, 796
FokI	GGATG	3 cut(s)	331, 461, 497
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	44, 702, 816
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	5 cut(s)	295, 302, 439, 600, 946
HapII	CCGG	2 cut(s)	743, 900
HgaI	GACGC	1 cut(s)	696
Hin1II	CATG	6 cut(s)	115, 137, 342, 605, 891, 945
HindIII	AAGCTT	3 cut(s)	59, 262, 859
HinfI	GANTC	2 cut(s)	220, 413
HpaII	CCGG	2 cut(s)	743, 900
HphI	GGTGA	4 cut(s)	183, 249, 422, 886
Hpy166II	GTNNAC	3 cut(s)	647, 727, 797
Hpy188I	TCNGA	2 cut(s)	284, 536
Hpy188III	TCNNGA	3 cut(s)	217, 497, 804
Hpy8I	GTNNAC	3 cut(s)	647, 727, 797
HpyCH4III	ACNGT	4 cut(s)	629, 639, 667, 782
HpyCH4V	TGCA	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	384, 587, 602, 622
HpyF3I	CTNAG	5 cut(s)	441, 477, 533, 832, 862
Hsp92II	CATG	6 cut(s)	115, 137, 342, 605, 891, 945
Kzo9I	GATC	3 cut(s)	158, 354, 739
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	44, 702, 816
MaeIII	GTNAC	2 cut(s)	179, 410
MalI	GATC	3 cut(s)	160, 356, 741
MboI	GATC	3 cut(s)	158, 354, 739
MboII	GAAGA	9 cut(s)	8, 15, 18, 26, 96, 243, 246, 878, 889
MfeI	CAATTG	2 cut(s)	388, 515
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	534, 787
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	5 cut(s)	73, 99, 388, 500, 515
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	2 cut(s)	214, 407
MmeI	TCCRAC	1 cut(s)	332
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	600
MspI	CCGG	2 cut(s)	743, 900
MspR9I	CCNGG	3 cut(s)	607, 852, 948
MunI	CAATTG	2 cut(s)	388, 515
MvaI	CCWGG	3 cut(s)	607, 852, 948
MwoI	GCNNNNNNNGC	4 cut(s)	384, 587, 602, 622
NcoI	CCATGG	1 cut(s)	941
NdeII	GATC	3 cut(s)	158, 354, 739
NlaIII	CATG	6 cut(s)	115, 137, 342, 605, 891, 945
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	179, 410
PceI	AGGCCT	2 cut(s)	295, 439
PflMI	CCANNNNNTGG	1 cut(s)	947
PinAI	ACCGGT	1 cut(s)	899
PleI	GAGTC	2 cut(s)	214, 407
PpsI	GAGTC	2 cut(s)	214, 407
PpuMI	RGGWCCY	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	3 cut(s)	605, 850, 946
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	3 cut(s)	605, 850, 946
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	631, 813
RsaNI	GTAC	2 cut(s)	630, 812
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	534
Sau3AI	GATC	3 cut(s)	158, 354, 739
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	214, 407
ScrFI	CCNGG	3 cut(s)	607, 852, 948
SduI	GDGCHC	2 cut(s)	534, 787
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	3 cut(s)	206, 215, 617
SmoI	CTYRAG	3 cut(s)	206, 215, 617
Sse9I	AATT	5 cut(s)	73, 99, 388, 500, 515
SseBI	AGGCCT	2 cut(s)	295, 439
SsiI	CCGC	3 cut(s)	452, 721, 872
SspMI	CTAG	3 cut(s)	44, 702, 816
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	2 cut(s)	295, 439
StyD4I	CCNGG	3 cut(s)	605, 850, 946
StyI	CCWWGG	2 cut(s)	672, 941
TaaI	ACNGT	4 cut(s)	629, 639, 667, 782
TaqI	TCGA	1 cut(s)	223
TasI	AATT	5 cut(s)	73, 99, 388, 500, 515
TatI	WGTACW	1 cut(s)	629
TscAI	CASTG	3 cut(s)	184, 642, 701
TseFI	GTSAC	2 cut(s)	179, 410
Tsp45I	GTSAC	2 cut(s)	179, 410
TspDTI	ATGAA	3 cut(s)	26, 582, 968
TspRI	CASTG	3 cut(s)	184, 642, 701
Van91I	CCANNNNNTGG	1 cut(s)	947
VpaK11BI	GGWCC	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmiI	GTMKAC	2 cut(s)	726, 796
XspI	CTAG	3 cut(s)	44, 702, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.