pycom15g15780

Nudix hydrolase 19

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
10981299 .. 10983238
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15780.5

Sequence Viewer

Length: 1215 bp
ATGTCCATAAACCTCCAGTCCCACGCCTTCGCTGGCAATCCTCTGCTATCCAAGACCCCAAATCCCAGCGACCCGTTTTCACCATCCCAAGCCCTCGAGACCCTCAAGACCCAACTTTTGGAAGGGGCCCAATTGCCTTCTTCCCTCAGCTTCAAGGTTCTGCCCTTCAGAAAGGGCAGTCCTTTAGCCTCCTCCAGCCGTGGGGCCGGCGATTCCGCGCCAAATTGTCATCTGGGTTGGATCAGTTTGTCTGAGTGTAAAGGTTTCCTGGCCAATTGTGGGGTTCAACTGAGTGGAGAGTCGCTGGTTTATCTGGGTTCTCGGCCCGAAGACGATGTCGTTTATTGGGCAATTGATGTTTCTGCTGAGAGTAACTTGGTTACTGAATTGGGTAGCAAGCAATTGTGTTTTGTTGAGCTGAGGACGCTTATGATGGCTACTGATTGGGCTGATGCTCGAGCTATGGGGGAGTTGGCTATTGCTGGACATGCCAGGGCTTTGCTAGATTGGCATAGTATAACACAATTTTGTGGACATTGTGGAGAAAAAACAGTCCCCAAGGAAGCCGGAAGGCGGAAGCAATGTTCGAGTGAGCTGTGCCCAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTCATTGATGGAGAGAATGACCGTGCTCTATTAAGTAGACAGTCTCGATATGTACCTCGAATGTGGAGCTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCAGTGAGGAGGGAAACGTGGGAGGAGACCAGAATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAGCCATGGCCTGTTGGACCAAGTAGCATGCCGTGCCAGTTGATGGTTGGCTTTTTGGCATATGCAAAGTCACTTGAAATAAGTGTGGACAAGGAAGAGTTGGAAGATGCTCAGTGGCACAGTAGAGAAGATGTAAAGAGAGCTTTGGCATTTGCTGAGTACAAGAAGGCACAGAGTACGGTGGCATCAAAGGTAGAACAGATGTGCAAAGGAGTAGAGAAGGAGCAGCGCTTGTCTGCCGACTTCAATGTTGAAAGTGGTGAACTCGCCTCCATGTGTATACGCGGGCCATTTTCAATTGCCCATCACCTTATCTCTTCATGGGCCTATCAGGATGCAACCGATGGTGCCGCAGTTCTAAAACAATCTAGCGGTTCTACTTGGAATTTGTAG

Protein Analysis

405

Amino Acids

44.38

Weight (kDa)

5.5

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1169
AccB7I CCANNNNNTGG 2 cut(s) 118, 865
AccI GTMKAC 3 cut(s) 612, 682, 1102
AccII CGCG 2 cut(s) 218, 1107
AciI CCGC 6 cut(s) 216, 574, 607, 1107, 1173, 1194
AclWI GGATC 2 cut(s) 248, 620
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 1207
AcuI CTGAAG 1 cut(s) 151
AfaI GTAC 3 cut(s) 699, 983, 1000
AfeI AGCGCT 1 cut(s) 1052
AfiI CCNNNNNNNGG 6 cut(s) 118, 201, 279, 573, 607, 865
AgsI TTSAA 7 cut(s) 154, 287, 794, 899, 1069, 1076, 1119
AjnI CCWGG 3 cut(s) 267, 491, 736
AloI GAACNNNNNNTCC 2 cut(s) 568, 600
AluBI AGCT 9 cut(s) 150, 418, 461, 595, 714, 722, 747, 819, 965
AluI AGCT 9 cut(s) 150, 418, 461, 595, 714, 722, 747, 819, 965
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 92, 693, 776
AlwI GGATC 2 cut(s) 248, 620
Ama87I CYCGRG 2 cut(s) 95, 456
Aor51HI AGCGCT 1 cut(s) 1052
AoxI GGCC 7 cut(s) 126, 204, 270, 323, 830, 1109, 1146
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 714, 1048
ApoI RAATTY 1 cut(s) 1207
ArsI GACNNNNNNTTYG 4 cut(s) 100, 132, 321, 353
AspLEI GCGC 2 cut(s) 220, 1053
AspS9I GGNCC 7 cut(s) 126, 127, 204, 324, 839, 1109, 1146
AsuHPI GGTGA 3 cut(s) 72, 1094, 1121
AvaI CYCGRG 2 cut(s) 95, 456
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 2 cut(s) 130, 602
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 1169
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 673
BbvCI CCTCAGC 2 cut(s) 146, 419
BbvI GCAGC 2 cut(s) 701, 1060
BccI CCATC 6 cut(s) 91, 427, 647, 859, 1134, 1160
BceAI ACGGC 2 cut(s) 183, 838
BciT130I CCWGG 3 cut(s) 269, 493, 738
BcoDI GTCTC 3 cut(s) 92, 693, 776
BfaI CTAG 2 cut(s) 503, 1191
BfoI RGCGCY 1 cut(s) 1054
BisI GCNGC 3 cut(s) 715, 1049, 1173
BlpI GCTNAGC 1 cut(s) 718
BlsI GCNGC 3 cut(s) 716, 1050, 1174
Bme1390I CCNGG 3 cut(s) 269, 493, 738
Bme18I GGWCC 1 cut(s) 839
BmeT110I CYCGRG 2 cut(s) 95, 456
BmgT120I GGNCC 7 cut(s) 126, 127, 204, 324, 839, 1109, 1146
BmiI GGNNCC 4 cut(s) 127, 128, 205, 1171
BmrFI CCNGG 3 cut(s) 269, 493, 738
BmsI GCATC 4 cut(s) 442, 919, 1016, 1147
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 2 cut(s) 146, 419
Bpu1102I GCTNAGC 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 89
BsaI GGTCTC 2 cut(s) 92, 776
BsaJI CCNNGG 4 cut(s) 199, 492, 558, 827
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 201, 279, 573, 607, 865
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 16, 859
Bse3DI GCAATG 1 cut(s) 587
BseBI CCWGG 3 cut(s) 269, 493, 738
BseDI CCNNGG 4 cut(s) 199, 492, 558, 827
BseGI GGATG 2 cut(s) 83, 1162
BseLI CCNNNNNNNGG 6 cut(s) 118, 201, 279, 573, 607, 865
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 8 cut(s) 160, 243, 281, 357, 410, 836, 947, 969
BseNI ACTGG 2 cut(s) 16, 859
BseRI GAGGAG 3 cut(s) 181, 778, 794
BseSI GKGCMC 2 cut(s) 130, 602
BseXI GCAGC 2 cut(s) 701, 1060
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 218, 1107
BshFI GGCC 7 cut(s) 128, 206, 272, 325, 832, 1111, 1148
BshNI GGYRCC 1 cut(s) 1169
BsiHKAI GWGCWC 1 cut(s) 673
BsiHKCI CYCGRG 2 cut(s) 95, 456
BsiSI CCGG 3 cut(s) 207, 567, 629
BslFI GGGAC 2 cut(s) 4, 539
BslI CCNNNNNNNGG 6 cut(s) 118, 201, 279, 573, 607, 865
BsmAI GTCTC 3 cut(s) 92, 693, 776
BsmFI GGGAC 2 cut(s) 4, 539
BsnI GGCC 7 cut(s) 128, 206, 272, 325, 832, 1111, 1148
Bso31I GGTCTC 2 cut(s) 92, 776
BsoBI CYCGRG 2 cut(s) 95, 456
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 602, 673
Bsp143I GATC 2 cut(s) 240, 625
Bsp1720I GCTNAGC 1 cut(s) 718
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 6 cut(s) 216, 574, 607, 1107, 1173, 1194
BspANI GGCC 7 cut(s) 128, 206, 272, 325, 832, 1111, 1148
BspCNI CTCAG 8 cut(s) 159, 244, 282, 358, 411, 835, 946, 970
BspFNI CGCG 2 cut(s) 218, 1107
BspLI GGNNCC 4 cut(s) 127, 128, 205, 1171
BspPI GGATC 2 cut(s) 248, 620
BspT107I GGYRCC 1 cut(s) 1169
BspTNI GGTCTC 2 cut(s) 92, 776
BsrDI GCAATG 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 16, 859
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 4 cut(s) 199, 492, 558, 827
BssMI GATC 2 cut(s) 240, 625
BssNAI GTATAC 1 cut(s) 1103
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 558, 827
Bst1107I GTATAC 1 cut(s) 1103
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 3 cut(s) 269, 493, 738
Bst4CI ACNGT 5 cut(s) 553, 668, 687, 944, 1003
Bst6I CTCTTC 2 cut(s) 912, 1144
BstAPI GCANNNNNTGC 1 cut(s) 855
BstC8I GCNNGC 5 cut(s) 34, 208, 398, 851, 1109
BstDSI CCRYGG 2 cut(s) 199, 827
BstF5I GGATG 2 cut(s) 83, 1162
BstFNI CGCG 2 cut(s) 218, 1107
BstH2I RGCGCY 1 cut(s) 1054
BstHHI GCGC 2 cut(s) 220, 1053
BstKTI GATC 2 cut(s) 243, 628
BstMAI GTCTC 3 cut(s) 92, 693, 776
BstMBI GATC 2 cut(s) 240, 625
BstMWI GCNNNNNNNGC 4 cut(s) 424, 488, 508, 855
BstNI CCWGG 3 cut(s) 269, 493, 738
BstNSI RCATGY 2 cut(s) 491, 853
BstSCI CCNGG 3 cut(s) 267, 491, 736
BstSLI GKGCMC 2 cut(s) 130, 602
BstUI CGCG 2 cut(s) 218, 1107
BstV1I GCAGC 2 cut(s) 701, 1060
BstV2I GAAGAC 1 cut(s) 336
BstZ17I GTATAC 1 cut(s) 1103
BsuRI GGCC 7 cut(s) 128, 206, 272, 325, 832, 1111, 1148
BtgI CCRYGG 2 cut(s) 199, 827
BtsCI GGATG 2 cut(s) 83, 1162
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 2 cut(s) 765, 941
Cac8I GCNNGC 5 cut(s) 34, 208, 398, 851, 1109
CfoI GCGC 2 cut(s) 220, 1053
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 7 cut(s) 126, 127, 204, 324, 839, 1109, 1146
CseI GACGC 1 cut(s) 433
Csp6I GTAC 3 cut(s) 698, 982, 999
CviAII CATG 5 cut(s) 488, 828, 850, 1096, 1143
CviQI GTAC 3 cut(s) 698, 982, 999
DpnI GATC 2 cut(s) 242, 627
DpnII GATC 2 cut(s) 240, 625
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 912, 1144
EarI CTCTTC 2 cut(s) 912, 1144
EciI GGCGGA 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 558, 827
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 2 cut(s) 92, 776
Eco47I GGWCC 1 cut(s) 839
Eco47III AGCGCT 1 cut(s) 1052
Eco57I CTGAAG 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 95, 456
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 3 cut(s) 267, 491, 736
EcoT14I CCWWGG 2 cut(s) 558, 827
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 558, 827
FaeI CATG 5 cut(s) 491, 831, 853, 1099, 1146
FaqI GGGAC 2 cut(s) 4, 539
FatI CATG 5 cut(s) 487, 827, 849, 1095, 1142
FauI CCCGC 2 cut(s) 600, 1100
FauNDI CATATG 1 cut(s) 883
FblI GTMKAC 3 cut(s) 612, 682, 1102
Fnu4HI GCNGC 3 cut(s) 715, 1049, 1173
FokI GGATG 2 cut(s) 70, 1169
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 715, 1049, 1173
FspBI CTAG 2 cut(s) 503, 1191
GlaI GCGC 2 cut(s) 219, 1052
GluI GCNGC 3 cut(s) 715, 1049, 1173
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 1054
HaeIII GGCC 7 cut(s) 128, 206, 272, 325, 832, 1111, 1148
HapII CCGG 3 cut(s) 207, 567, 629
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 220, 1053
Hin1II CATG 5 cut(s) 491, 831, 853, 1099, 1146
Hin6I GCGC 2 cut(s) 218, 1051
HinP1I GCGC 2 cut(s) 218, 1051
HindIII AAGCTT 1 cut(s) 745
HinfI GANTC 2 cut(s) 212, 299
HpaII CCGG 3 cut(s) 207, 567, 629
HphI GGTGA 3 cut(s) 72, 1094, 1121
Hpy166II GTNNAC 6 cut(s) 533, 613, 683, 910, 1085, 1103
Hpy188I TCNGA 2 cut(s) 170, 253
Hpy188III TCNNGA 4 cut(s) 97, 106, 690, 1154
Hpy8I GTNNAC 6 cut(s) 533, 613, 683, 910, 1085, 1103
HpyAV CCTTC 7 cut(s) 37, 116, 147, 175, 564, 982, 1036
HpyCH4III ACNGT 5 cut(s) 553, 668, 687, 944, 1003
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 3 cut(s) 887, 1029, 1160
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 488, 508, 855
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 5 cut(s) 491, 831, 853, 1099, 1146
HspAI GCGC 2 cut(s) 218, 1051
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 240, 625
LmnI GCTCC 2 cut(s) 711, 1045
Lsp1109I GCAGC 2 cut(s) 701, 1060
LweI GCATC 4 cut(s) 442, 919, 1016, 1147
MaeI CTAG 2 cut(s) 503, 1191
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 3 cut(s) 371, 379, 891
MalI GATC 2 cut(s) 242, 627
MboI GATC 2 cut(s) 240, 625
MboII GAAGA 7 cut(s) 132, 341, 764, 929, 938, 962, 1131
MfeI CAATTG 5 cut(s) 131, 274, 351, 401, 1119
MhlI GDGCHC 3 cut(s) 130, 602, 673
MlsI TGGCCA 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 3 cut(s) 218, 817, 903
Mox20I TGGCCA 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 272
MseI TTAA 1 cut(s) 677
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 3 cut(s) 207, 567, 629
MspR9I CCNGG 3 cut(s) 269, 493, 738
MunI CAATTG 5 cut(s) 131, 274, 351, 401, 1119
MvaI CCWGG 3 cut(s) 269, 493, 738
MvnI CGCG 2 cut(s) 218, 1107
MwoI GCNNNNNNNGC 4 cut(s) 424, 488, 508, 855
NaeI GCCGGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 827
NdeI CATATG 1 cut(s) 883
NdeII GATC 2 cut(s) 240, 625
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 5 cut(s) 491, 831, 853, 1099, 1146
NlaIV GGNNCC 4 cut(s) 127, 128, 205, 1171
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 891
NspI RCATGY 2 cut(s) 491, 853
PaeI GCATGC 1 cut(s) 853
PaeR7I CTCGAG 2 cut(s) 95, 456
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 2 cut(s) 118, 865
PkrI GCNGC 3 cut(s) 716, 1050, 1174
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 3 cut(s) 267, 491, 736
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 267, 491, 736
PspN4I GGNNCC 4 cut(s) 127, 128, 205, 1171
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 7 cut(s) 126, 127, 204, 324, 839, 1109, 1146
PspXI VCTCGAGB 1 cut(s) 456
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 3 cut(s) 699, 983, 1000
RsaNI GTAC 3 cut(s) 698, 982, 999
SaqAI TTAA 1 cut(s) 677
SatI GCNGC 3 cut(s) 715, 1049, 1173
Sau3AI GATC 2 cut(s) 240, 625
Sau96I GGNCC 7 cut(s) 126, 127, 204, 324, 839, 1109, 1146
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 3 cut(s) 269, 493, 738
SduI GDGCHC 3 cut(s) 130, 602, 673
SfaNI GCATC 4 cut(s) 442, 919, 1016, 1147
Sfr274I CTCGAG 2 cut(s) 95, 456
SinI GGWCC 1 cut(s) 839
SlaI CTCGAG 2 cut(s) 95, 456
SmlI CTYRAG 3 cut(s) 95, 104, 456
SmoI CTYRAG 3 cut(s) 95, 104, 456
SphI GCATGC 1 cut(s) 853
SsiI CCGC 6 cut(s) 216, 574, 607, 1107, 1173, 1194
SspMI CTAG 2 cut(s) 503, 1191
StyD4I CCNGG 3 cut(s) 267, 491, 736
StyI CCWWGG 2 cut(s) 558, 827
TaaI ACNGT 5 cut(s) 553, 668, 687, 944, 1003
TaiI ACGT 1 cut(s) 776
TaqI TCGA 5 cut(s) 96, 457, 587, 691, 703
TatI WGTACW 1 cut(s) 981
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 677
Tru9I TTAA 1 cut(s) 677
TscAI CASTG 2 cut(s) 765, 941
TseFI GTSAC 1 cut(s) 891
TseI GCWGC 2 cut(s) 714, 1048
Tsp45I GTSAC 1 cut(s) 891
TspDTI ATGAA 1 cut(s) 1131
TspRI CASTG 2 cut(s) 765, 941
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 2 cut(s) 118, 865
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 1 cut(s) 1207
XceI RCATGY 2 cut(s) 491, 853
XcmI CCANNNNNNNNNTGG 2 cut(s) 29, 866
XhoI CTCGAG 2 cut(s) 95, 456
XmiI GTMKAC 3 cut(s) 612, 682, 1102
XspI CTAG 2 cut(s) 503, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.