Rroxscaffold_2G00152220

Nudix hydrolase 19

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
89271029 .. 89273294
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152220.1

Sequence Viewer

Length: 1326 bp
ATGGTCAAGCTCTCTCTTCTCTCTTCTTCCTCTCTTCATCTCCTAGCTTTATCCAAAAAGCTTGCTCTCCCCAATTTCACAAGAAGAACCCTTTGCTCAATTCCCACCACCATGTCCATAAACCTCCAGTCTCATGCCTTTGCTGGCAATCCTATGAGATCCAAGACCCCAAAACCCAGTGACCCATTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCAACTTTTGGACAATCCCCACTTGCCCTCTTGTTCACCAAGCTTCAAGGTCCTGCCTTTCAGAAAGGGCAGGCCTTTGGCCTCAACCATTGGTGGGATCAGTGATTTGAAGCCAACTTGGTATCTGGGTTGGATCAGTTTGGCTGATTGTAAAGGCTTGTTGGGTAATTGTGGGGTTGAGTTGAGTGGTGACTCATTGGTGTATCTGGGTTCAAGGCCTGAGGAGGATGCGGTTTATTGGGCTATTGATGTGTCTAAGGAGGATGGTGTGGTTCCTCAATTGGGTGGGAAGCAATTGTGTTTTGTTGAGCTCAGAACACTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGTTGGCTGTTGCTGGCCATGCCAGGGCTTTGCTTGAGTGGCACAGTACATCACTTTTTTGTGGACATTGTGGAGAAAGGACAGTCCCCAAGGAAGCTGGGAGACGCAAGCAGTGTTCTAGTGAGCTGTGCAGAAAGCGGGTCTACCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAGAATGACCGTGCTCTGTTGAGTAGACAATCCCGATTTGTACCTAGAATGTGGAGTTGCTTAGCTGGTTTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGAGAGAAACATGGGAGGAGACCGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGACCAAGTAGCATGCCGTGCCAGTTGATGGTTGGTTTCTTTGCATATGCCAAATCACTTGAAATAAATGTCGACAAGGAAGAGTTGGAAGACGCCCAGTGGCACAGTAGAGAAGATGTAAAAAAAGCTTTGACATTTACTGAATATGAGAAGGCACAGAAAACAGCGGCAGAGAAGGTTGAGCAGATGTGCAGGGGCGTTGAGAAAGGGCAGAACTTTTCTGCAGACTACAGTGTGGAAAGTGGCGAACTTACTCCCATGTTTATACCGGGGCCATTTGCAATTGCCCATCACCTCATCTCTTCTTGGGTCTATCAGGATGCACCAGACAGTGTTGAAGCACGTCCAAAACATCCTTGTGGTTCAAATTTGTAG

Protein Analysis

441

Amino Acids

48.9

Weight (kDa)

6.17

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX-like PF09296 91 - 208 1.3e-06 NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD PF09297 210 - 242 6.6e-07 NADH pyrophosphatase zinc ribbon domain
NUDIX PF00293 249 - 360 3.6e-19 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 979
AccI GTMKAC 3 cut(s) 726, 796, 1023
AciI CCGC 4 cut(s) 452, 721, 872, 1118
AclWI GGATC 4 cut(s) 153, 326, 362, 734
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 1 cut(s) 1318
AcyI GRCGYC 1 cut(s) 1044
AfaI GTAC 2 cut(s) 631, 813
AfiI CCNNNNNNNGG 4 cut(s) 315, 503, 607, 979
AgeI ACCGGT 1 cut(s) 899
AgsI TTSAA 7 cut(s) 268, 331, 435, 908, 1013, 1289, 1317
AjiI CACGTC 1 cut(s) 1295
AjnI CCWGG 2 cut(s) 605, 850
Alw21I GWGCWC 2 cut(s) 534, 787
Alw26I GTCTC 4 cut(s) 135, 203, 679, 890
AlwI GGATC 4 cut(s) 153, 326, 362, 734
AoxI GGCC 6 cut(s) 293, 300, 437, 598, 944, 1223
ApoI RAATTY 1 cut(s) 1318
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AsiGI ACCGGT 1 cut(s) 899
AspS9I GGNCC 3 cut(s) 271, 953, 1223
AsuC2I CCSGG 1 cut(s) 1221
AsuHPI GGTGA 5 cut(s) 183, 249, 422, 886, 1235
AvaII GGWCC 2 cut(s) 271, 953
AxyI CCTNAGG 1 cut(s) 441
BalI TGGCCA 1 cut(s) 600
BanII GRGCYC 1 cut(s) 534
BauI CACGAG 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 1047
Bbv12I GWGCWC 2 cut(s) 534, 787
BccI CCATC 3 cut(s) 479, 973, 1248
BceAI ACGGC 1 cut(s) 952
BciT130I CCWGG 2 cut(s) 607, 852
BcnI CCSGG 1 cut(s) 1221
BcoDI GTCTC 4 cut(s) 135, 203, 679, 890
BfaI CTAG 3 cut(s) 44, 702, 816
BfmI CTRYAG 2 cut(s) 1173, 1180
BisI GCNGC 1 cut(s) 1119
BlpI GCTNAGC 1 cut(s) 832
BlsI GCNGC 1 cut(s) 1120
Bme1390I CCNGG 3 cut(s) 607, 852, 1221
Bme18I GGWCC 2 cut(s) 271, 953
BmgBI CACGTC 1 cut(s) 1295
BmgT120I GGNCC 3 cut(s) 271, 953, 1223
BmiI GGNNCC 2 cut(s) 495, 1224
BmrFI CCNGG 3 cut(s) 607, 852, 1221
BmrI ACTGGG 2 cut(s) 171, 1042
BmsI GCATC 2 cut(s) 439, 1261
BmuI ACTGGG 2 cut(s) 171, 1042
BpiI GAAGAC 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 832
BpuEI CTTGAG 3 cut(s) 200, 227, 638
BpuMI CCSGG 1 cut(s) 1221
BsaHI GRCGYC 1 cut(s) 1044
BsaI GGTCTC 2 cut(s) 203, 890
BsaJI CCNNGG 4 cut(s) 606, 672, 941, 1220
BsaWI WCCGGW 2 cut(s) 742, 899
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 503, 607, 979
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 4 cut(s) 127, 177, 973, 1048
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 2 cut(s) 607, 852
BseDI CCNNGG 4 cut(s) 606, 672, 941, 1220
BseGI GGATG 4 cut(s) 454, 490, 1276, 1303
BseLI CCNNNNNNNGG 4 cut(s) 315, 503, 607, 979
BseMII CTCAG 2 cut(s) 432, 547
BseNI ACTGG 4 cut(s) 127, 177, 973, 1048
BseRI GAGGAG 2 cut(s) 458, 908
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 733, 1162
BshFI GGCC 6 cut(s) 295, 302, 439, 600, 946, 1225
BshTI ACCGGT 1 cut(s) 899
BsiHKAI GWGCWC 2 cut(s) 534, 787
BsiSI CCGG 3 cut(s) 743, 900, 1220
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 4 cut(s) 315, 503, 607, 979
BsmAI GTCTC 4 cut(s) 135, 203, 679, 890
BsmBI CGTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 6 cut(s) 295, 302, 439, 600, 946, 1225
Bso31I GGTCTC 2 cut(s) 203, 890
Bsp1286I GDGCHC 2 cut(s) 534, 787
Bsp143I GATC 4 cut(s) 158, 318, 354, 739
Bsp1720I GCTNAGC 1 cut(s) 832
Bsp19I CCATGG 1 cut(s) 941
BspACI CCGC 4 cut(s) 452, 721, 872, 1118
BspANI GGCC 6 cut(s) 295, 302, 439, 600, 946, 1225
BspCNI CTCAG 2 cut(s) 433, 546
BspLI GGNNCC 2 cut(s) 495, 1224
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 4 cut(s) 153, 326, 362, 734
BspTNI GGTCTC 2 cut(s) 203, 890
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 4 cut(s) 127, 177, 973, 1048
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 4 cut(s) 606, 672, 941, 1220
BssMI GATC 4 cut(s) 158, 318, 354, 739
BssNI GRCGYC 1 cut(s) 1044
BssSI CACGAG 1 cut(s) 732
BssT1I CCWWGG 2 cut(s) 672, 941
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 607, 852
Bst4CI ACNGT 6 cut(s) 629, 667, 782, 1058, 1184, 1283
Bst6I CTCTTC 6 cut(s) 21, 28, 39, 872, 1026, 1258
BstACI GRCGYC 1 cut(s) 1044
BstAPI GCANNNNNTGC 1 cut(s) 969
BstC8I GCNNGC 6 cut(s) 63, 145, 293, 598, 692, 965
BstDEI CTNAG 5 cut(s) 441, 477, 533, 832, 862
BstDSI CCRYGG 1 cut(s) 941
BstF5I GGATG 4 cut(s) 454, 490, 1276, 1303
BstKTI GATC 4 cut(s) 161, 321, 357, 742
BstMAI GTCTC 4 cut(s) 135, 203, 679, 890
BstMBI GATC 4 cut(s) 158, 318, 354, 739
BstMWI GCNNNNNNNGC 4 cut(s) 587, 602, 622, 969
BstNI CCWGG 2 cut(s) 607, 852
BstNSI RCATGY 1 cut(s) 967
BstSCI CCNGG 3 cut(s) 605, 850, 1219
BstSFI CTRYAG 2 cut(s) 1173, 1180
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 6 cut(s) 295, 302, 439, 600, 946, 1225
BtgI CCRYGG 1 cut(s) 941
BtrI CACGTC 1 cut(s) 1295
BtsCI GGATG 4 cut(s) 454, 490, 1276, 1303
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 6 cut(s) 184, 328, 701, 1055, 1189, 1288
Cac8I GCNNGC 6 cut(s) 63, 145, 293, 598, 692, 965
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 3 cut(s) 271, 953, 1223
CseI GACGC 2 cut(s) 696, 1052
Csp6I GTAC 2 cut(s) 630, 812
CspAI ACCGGT 1 cut(s) 899
CviAII CATG 7 cut(s) 112, 134, 602, 888, 942, 964, 1210
CviQI GTAC 2 cut(s) 630, 812
DdeI CTNAG 5 cut(s) 441, 477, 533, 832, 862
DpnI GATC 4 cut(s) 160, 320, 356, 741
DpnII GATC 4 cut(s) 158, 318, 354, 739
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 6 cut(s) 21, 28, 39, 872, 1026, 1258
EarI CTCTTC 6 cut(s) 21, 28, 39, 872, 1026, 1258
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 672, 941
Eco147I AGGCCT 2 cut(s) 295, 439
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 2 cut(s) 203, 890
Eco47I GGWCC 2 cut(s) 271, 953
Eco53kI GAGCTC 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 441
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 605, 850
EcoT14I CCWWGG 2 cut(s) 672, 941
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 2 cut(s) 672, 941
Esp3I CGTCTC 1 cut(s) 679
FaeI CATG 7 cut(s) 115, 137, 605, 891, 945, 967, 1213
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 111, 133, 601, 887, 941, 963, 1209
FauI CCCGC 1 cut(s) 714
FauNDI CATATG 1 cut(s) 997
FblI GTMKAC 3 cut(s) 726, 796, 1023
Fnu4HI GCNGC 1 cut(s) 1119
FokI GGATG 4 cut(s) 461, 497, 1283, 1290
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 1 cut(s) 1119
FspBI CTAG 3 cut(s) 44, 702, 816
GluI GCNGC 1 cut(s) 1119
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 6 cut(s) 295, 302, 439, 600, 946, 1225
HapII CCGG 3 cut(s) 743, 900, 1220
HgaI GACGC 2 cut(s) 696, 1052
Hin1I GRCGYC 1 cut(s) 1044
Hin1II CATG 7 cut(s) 115, 137, 605, 891, 945, 967, 1213
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 4 cut(s) 59, 262, 859, 1077
HinfI GANTC 2 cut(s) 220, 413
HpaII CCGG 3 cut(s) 743, 900, 1220
HphI GGTGA 5 cut(s) 183, 249, 422, 886, 1235
Hpy166II GTNNAC 5 cut(s) 257, 647, 727, 797, 1024
Hpy188I TCNGA 2 cut(s) 284, 536
Hpy188III TCNNGA 3 cut(s) 217, 804, 1268
Hpy8I GTNNAC 5 cut(s) 257, 647, 727, 797, 1024
HpyAV CCTTC 2 cut(s) 1096, 1120
HpyCH4III ACNGT 6 cut(s) 629, 667, 782, 1058, 1184, 1283
HpyCH4IV ACGT 1 cut(s) 1294
HpyCH4V TGCA 6 cut(s) 714, 995, 1143, 1175, 1232, 1274
HpyF10VI GCNNNNNNNGC 4 cut(s) 587, 602, 622, 969
HpyF3I CTNAG 5 cut(s) 441, 477, 533, 832, 862
HpySE526I ACGT 1 cut(s) 1294
Hsp92I GRCGYC 1 cut(s) 1044
Hsp92II CATG 7 cut(s) 115, 137, 605, 891, 945, 967, 1213
Kzo9I GATC 4 cut(s) 158, 318, 354, 739
LweI GCATC 2 cut(s) 439, 1261
MaeI CTAG 3 cut(s) 44, 702, 816
MaeII ACGT 1 cut(s) 1294
MaeIII GTNAC 2 cut(s) 179, 410
MalI GATC 4 cut(s) 160, 320, 356, 741
MboI GATC 4 cut(s) 158, 318, 354, 739
MfeI CAATTG 3 cut(s) 500, 515, 1233
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 2 cut(s) 534, 787
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 7 cut(s) 73, 99, 388, 500, 515, 1233, 1318
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 2 cut(s) 214, 407
MmeI TCCRAC 3 cut(s) 332, 931, 1017
Mox20I TGGCCA 1 cut(s) 600
MscI TGGCCA 1 cut(s) 600
MslI CAYNNNNRTG 2 cut(s) 110, 1308
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 1118
MspI CCGG 3 cut(s) 743, 900, 1220
MspR9I CCNGG 3 cut(s) 607, 852, 1221
MunI CAATTG 3 cut(s) 500, 515, 1233
MvaI CCWGG 2 cut(s) 607, 852
MwoI GCNNNNNNNGC 4 cut(s) 587, 602, 622, 969
NciI CCSGG 1 cut(s) 1221
NcoI CCATGG 1 cut(s) 941
NdeI CATATG 1 cut(s) 997
NdeII GATC 4 cut(s) 158, 318, 354, 739
NlaIII CATG 7 cut(s) 115, 137, 605, 891, 945, 967, 1213
NlaIV GGNNCC 2 cut(s) 495, 1224
NmuCI GTSAC 2 cut(s) 179, 410
NspI RCATGY 1 cut(s) 967
PaeI GCATGC 1 cut(s) 967
PceI AGGCCT 2 cut(s) 295, 439
PflMI CCANNNNNTGG 1 cut(s) 979
PinAI ACCGGT 1 cut(s) 899
PkrI GCNGC 1 cut(s) 1120
PleI GAGTC 2 cut(s) 214, 407
PpsI GAGTC 2 cut(s) 214, 407
PpuMI RGGWCCY 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 605, 850
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 2 cut(s) 605, 850
PspN4I GGNNCC 2 cut(s) 495, 1224
PspPI GGNCC 3 cut(s) 271, 953, 1223
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 1177
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 2 cut(s) 631, 813
RsaNI GTAC 2 cut(s) 630, 812
RseI CAYNNNNRTG 2 cut(s) 110, 1308
SacI GAGCTC 1 cut(s) 534
SalI GTCGAC 1 cut(s) 1022
SatI GCNGC 1 cut(s) 1119
Sau3AI GATC 4 cut(s) 158, 318, 354, 739
Sau96I GGNCC 3 cut(s) 271, 953, 1223
SchI GAGTC 2 cut(s) 214, 407
ScrFI CCNGG 3 cut(s) 607, 852, 1221
SduI GDGCHC 2 cut(s) 534, 787
SfaNI GCATC 2 cut(s) 439, 1261
SfcI CTRYAG 2 cut(s) 1173, 1180
SinI GGWCC 2 cut(s) 271, 953
SmiMI CAYNNNNRTG 2 cut(s) 110, 1308
SmlI CTYRAG 3 cut(s) 206, 215, 617
SmoI CTYRAG 3 cut(s) 206, 215, 617
SphI GCATGC 1 cut(s) 967
Sse9I AATT 7 cut(s) 73, 99, 388, 500, 515, 1233, 1318
SseBI AGGCCT 2 cut(s) 295, 439
SsiI CCGC 4 cut(s) 452, 721, 872, 1118
SspMI CTAG 3 cut(s) 44, 702, 816
SstI GAGCTC 1 cut(s) 534
StuI AGGCCT 2 cut(s) 295, 439
StyD4I CCNGG 3 cut(s) 605, 850, 1219
StyI CCWWGG 2 cut(s) 672, 941
TaaI ACNGT 6 cut(s) 629, 667, 782, 1058, 1184, 1283
TaiI ACGT 1 cut(s) 1297
TaqI TCGA 1 cut(s) 1023
TasI AATT 7 cut(s) 73, 99, 388, 500, 515, 1233, 1318
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 1121
TscAI CASTG 6 cut(s) 184, 328, 701, 1055, 1189, 1288
TseFI GTSAC 2 cut(s) 179, 410
Tsp45I GTSAC 2 cut(s) 179, 410
TspDTI ATGAA 2 cut(s) 26, 582
TspRI CASTG 6 cut(s) 184, 328, 701, 1055, 1189, 1288
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 2 cut(s) 271, 953
XapI RAATTY 1 cut(s) 1318
XceI RCATGY 1 cut(s) 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XmiI GTMKAC 3 cut(s) 726, 796, 1023
XspI CTAG 3 cut(s) 44, 702, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.