Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1965241 .. 1967867

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03600.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGTCAAGCTATCTCTCTTCTCTTCTTGCTCACTGCATCTCCTAGCCCTATCCAAAAAGCTTGTTCTCCCCAATTTCACAAGAAGAACCCTTTGTTCAGTTCCCACCACCATGTCCATAAACCTCCAGTCCCATGCCTTTGCTGGCAATCCTCTGAGATCCAAGACCCCAAAACTCAGTGACCCTTTTTCACCAACCCAAGCCCTTGAGACCCTCAAGACTCAACTTTTGGACAATACCCACTTGCCCTCTTGTTCACCAAGCTTCAAGGTCCTGCCTTTCAGAAAGGGGAGGCCTTTGGCCTCAACCAATGGTGGGATCAGTGATTTGAAGCCAAATTGGTGTCTGGGTTGGATCAGTTTGGCTGATTGTAAGGGATTGTTGGGTAATTGTGGGGTTGAGTTGAGTGGTGATTCACTTGTGTATCTGGGTTCAAGGCCTGAGGAGGATGTGGTTTATTGGGCTGTTGATGTGTCTAAGGAGGATGGTGTGGTTCCTGAATTGGGTGGGAAGCAGTTGTGTTTTGTTGAGCTCAGAACGCTTATGGTGGCTACTGATTGGGCTGATGAAAGGGCTATGGCAGAGCTGGCCGTTGCTGGTCATGCCAGGGCTTTGCTTGAATGGCATAGTACAGCACTGTTTTGTGGACATTGTGGAGAAAAGACAGTCCCCAAAGAAGCTGGGAGACGTAAGCAGTGTTCTAGTGAGCTGTGCAGAAAGCGAGTTTATCCTCGTGTTGATCCGGTTGTCATAATGTTAGTGATTGATAAAGAAAATGACCGTGCTCTGTTAAGTAGGCAATCTCGATTTGTACCTAGAATGTGGAGTTGCTTGGCTGGATTTATAGAGCCAGGAGAAAGCTTAGAAGAAGCGGTGAAGCGAGAAACATGGGAGGAGACTGGTATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAACCATGGCCTGTTGGACCAAGTAGCATGCCATGCCAGTTGATGGTTGGTTTCTTTGCATATGCCAAATCACTTGATATAAATGTCGACAAGGAAGAGTTGGAAGACGCCGAGTGGCACAGTAGAGAAGATGTCAAAAAAGCTTTAACGTTTGCTGAATACGAGAAGGCACAGAAAACAGCGGTAGAGAAGGTTGAGCAGATGTGCAGGGGTGTTGAGAAAGGACAGAACTTGTCTGCCGACTTCAATGTGGAAAGCGGTGAACTTGCTCCCATGTTTATACCGGGGCCATTTGCAATTGCCCATCACCTCATATCTTCTTGGGTTTATCAGGATGCACCGGACAGTGCCAAAGCACATTCAAAACAACCTTGTGGTTCTAATTCGAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

444

Amino Acids

48.96

Weight (kDa)

6.05

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	91 - 208	1.2e-06	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	211 - 243	4.4e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	249 - 312	2.5e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	979
AccI	GTMKAC	1 cut(s)	1023
AciI	CCGC	3 cut(s)	872, 1118, 1194
AclI	AACGTT	1 cut(s)	1085
AclWI	GGATC	4 cut(s)	153, 326, 362, 734
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	1 cut(s)	1324
AcyI	GRCGYC	1 cut(s)	1044
AfaI	GTAC	2 cut(s)	631, 813
AfiI	CCNNNNNNNGG	3 cut(s)	315, 503, 979
AgsI	TTSAA	7 cut(s)	268, 331, 435, 620, 908, 1183, 1299
AjnI	CCWGG	2 cut(s)	605, 850
Alw21I	GWGCWC	2 cut(s)	534, 787
Alw26I	GTCTC	3 cut(s)	203, 679, 890
AlwI	GGATC	4 cut(s)	153, 326, 362, 734
AoxI	GGCC	6 cut(s)	293, 300, 437, 588, 944, 1223
ApoI	RAATTY	1 cut(s)	1324
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspS9I	GGNCC	3 cut(s)	271, 953, 1223
AsuC2I	CCSGG	1 cut(s)	1221
AsuHPI	GGTGA	6 cut(s)	183, 249, 422, 886, 1208, 1235
AsuII	TTCGAA	1 cut(s)	1322
AvaII	GGWCC	2 cut(s)	271, 953
AxyI	CCTNAGG	1 cut(s)	441
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	2 cut(s)	534, 787
BccI	CCATC	3 cut(s)	479, 973, 1248
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	2 cut(s)	607, 852
BcnI	CCSGG	1 cut(s)	1221
BcoDI	GTCTC	3 cut(s)	203, 679, 890
BfaI	CTAG	3 cut(s)	44, 702, 816
Bme1390I	CCNGG	3 cut(s)	607, 852, 1221
Bme18I	GGWCC	2 cut(s)	271, 953
BmgT120I	GGNCC	3 cut(s)	271, 953, 1223
BmiI	GGNNCC	2 cut(s)	495, 1224
BmrFI	CCNGG	3 cut(s)	607, 852, 1221
BmsI	GCATC	2 cut(s)	46, 1261
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	1322
BpuEI	CTTGAG	2 cut(s)	200, 227
BpuMI	CCSGG	1 cut(s)	1221
BsaHI	GRCGYC	1 cut(s)	1044
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	606, 941, 1220
BsaWI	WCCGGW	2 cut(s)	742, 1276
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 503, 979
Bse1I	ACTGG	3 cut(s)	127, 904, 973
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	607, 852
BseDI	CCNNGG	3 cut(s)	606, 941, 1220
BseGI	GGATG	3 cut(s)	454, 490, 1276
BseLI	CCNNNNNNNGG	3 cut(s)	315, 503, 979
BseMII	CTCAG	4 cut(s)	146, 190, 432, 547
BseNI	ACTGG	3 cut(s)	127, 904, 973
BseRI	GAGGAG	2 cut(s)	458, 908
BseYI	CCCAGC	1 cut(s)	680
BsgI	GTGCAG	2 cut(s)	733, 1162
BshFI	GGCC	6 cut(s)	295, 302, 439, 590, 946, 1225
BsiHKAI	GWGCWC	2 cut(s)	534, 787
BsiSI	CCGG	3 cut(s)	743, 1220, 1277
BslFI	GGGAC	2 cut(s)	115, 653
BslI	CCNNNNNNNGG	3 cut(s)	315, 503, 979
BsmAI	GTCTC	3 cut(s)	203, 679, 890
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	2 cut(s)	115, 653
BsnI	GGCC	6 cut(s)	295, 302, 439, 590, 946, 1225
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	1322
Bsp1286I	GDGCHC	2 cut(s)	534, 787
Bsp143I	GATC	4 cut(s)	158, 318, 354, 739
Bsp19I	CCATGG	1 cut(s)	941
BspACI	CCGC	3 cut(s)	872, 1118, 1194
BspANI	GGCC	6 cut(s)	295, 302, 439, 590, 946, 1225
BspCNI	CTCAG	4 cut(s)	147, 189, 433, 546
BspLI	GGNNCC	2 cut(s)	495, 1224
BspPI	GGATC	4 cut(s)	153, 326, 362, 734
BspT104I	TTCGAA	1 cut(s)	1322
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	127, 904, 973
BssECI	CCNNGG	3 cut(s)	606, 941, 1220
BssMI	GATC	4 cut(s)	158, 318, 354, 739
BssNI	GRCGYC	1 cut(s)	1044
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	941
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	607, 852
Bst4CI	ACNGT	5 cut(s)	639, 667, 782, 1058, 1283
Bst6I	CTCTTC	3 cut(s)	23, 28, 1026
BstACI	GRCGYC	1 cut(s)	1044
BstAPI	GCANNNNNTGC	1 cut(s)	969
BstBI	TTCGAA	1 cut(s)	1322
BstC8I	GCNNGC	3 cut(s)	145, 588, 965
BstDEI	CTNAG	6 cut(s)	155, 176, 441, 477, 533, 862
BstDSI	CCRYGG	1 cut(s)	941
BstF5I	GGATG	3 cut(s)	454, 490, 1276
BstKTI	GATC	4 cut(s)	161, 321, 357, 742
BstMAI	GTCTC	3 cut(s)	203, 679, 890
BstMBI	GATC	4 cut(s)	158, 318, 354, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	538, 587, 602, 622, 969
BstNI	CCWGG	2 cut(s)	607, 852
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	3 cut(s)	605, 850, 1219
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	6 cut(s)	295, 302, 439, 590, 946, 1225
BtgI	CCRYGG	1 cut(s)	941
BtsCI	GGATG	3 cut(s)	454, 490, 1276
BtsI	GCAGTG	2 cut(s)	32, 701
BtsIMutI	CAGTG	6 cut(s)	32, 184, 328, 635, 701, 1288
Cac8I	GCNNGC	3 cut(s)	145, 588, 965
Cfr13I	GGNCC	3 cut(s)	271, 953, 1223
CseI	GACGC	1 cut(s)	1052
Csp6I	GTAC	2 cut(s)	630, 812
CviAII	CATG	8 cut(s)	112, 134, 602, 888, 942, 964, 969, 1210
CviQI	GTAC	2 cut(s)	630, 812
DdeI	CTNAG	6 cut(s)	155, 176, 441, 477, 533, 862
DpnI	GATC	4 cut(s)	160, 320, 356, 741
DpnII	GATC	4 cut(s)	158, 318, 354, 739
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	23, 28, 1026
EarI	CTCTTC	3 cut(s)	23, 28, 1026
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	941
Eco147I	AGGCCT	2 cut(s)	295, 439
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	271, 953
Eco53kI	GAGCTC	1 cut(s)	532
Eco81I	CCTNAGG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	605, 850
EcoT14I	CCWWGG	1 cut(s)	941
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	941
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	8 cut(s)	115, 137, 605, 891, 945, 967, 972, 1213
FaqI	GGGAC	2 cut(s)	115, 653
FatI	CATG	8 cut(s)	111, 133, 601, 887, 941, 963, 968, 1209
FauNDI	CATATG	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	1023
FokI	GGATG	3 cut(s)	461, 497, 1283
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	44, 702, 816
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	6 cut(s)	295, 302, 439, 590, 946, 1225
HapII	CCGG	3 cut(s)	743, 1220, 1277
HgaI	GACGC	1 cut(s)	1052
Hin1I	GRCGYC	1 cut(s)	1044
Hin1II	CATG	8 cut(s)	115, 137, 605, 891, 945, 967, 972, 1213
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HindIII	AAGCTT	4 cut(s)	59, 262, 859, 1077
HinfI	GANTC	2 cut(s)	220, 413
HpaII	CCGG	3 cut(s)	743, 1220, 1277
HphI	GGTGA	6 cut(s)	183, 249, 422, 886, 1208, 1235
Hpy166II	GTNNAC	4 cut(s)	257, 647, 1024, 1199
Hpy188I	TCNGA	3 cut(s)	156, 284, 536
Hpy188III	TCNNGA	4 cut(s)	217, 497, 804, 1268
Hpy8I	GTNNAC	4 cut(s)	257, 647, 1024, 1199
HpyAV	CCTTC	2 cut(s)	1096, 1120
HpyCH4III	ACNGT	5 cut(s)	639, 667, 782, 1058, 1283
HpyCH4IV	ACGT	2 cut(s)	688, 1085
HpyCH4V	TGCA	6 cut(s)	37, 714, 995, 1143, 1232, 1274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	538, 587, 602, 622, 969
HpyF3I	CTNAG	6 cut(s)	155, 176, 441, 477, 533, 862
HpySE526I	ACGT	2 cut(s)	688, 1085
Hsp92I	GRCGYC	1 cut(s)	1044
Hsp92II	CATG	8 cut(s)	115, 137, 605, 891, 945, 967, 972, 1213
Kzo9I	GATC	4 cut(s)	158, 318, 354, 739
LmnI	GCTCC	1 cut(s)	1210
LweI	GCATC	2 cut(s)	46, 1261
MaeI	CTAG	3 cut(s)	44, 702, 816
MaeII	ACGT	2 cut(s)	688, 1085
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	4 cut(s)	160, 320, 356, 741
MboI	GATC	4 cut(s)	158, 318, 354, 739
MboII	GAAGA	8 cut(s)	10, 15, 96, 878, 1043, 1052, 1076, 1245
MfeI	CAATTG	1 cut(s)	1233
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	534, 787
MluCI	AATT	7 cut(s)	73, 337, 388, 500, 1233, 1318, 1324
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	3 cut(s)	332, 931, 1017
MseI	TTAA	2 cut(s)	791, 1082
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	1118
MspI	CCGG	3 cut(s)	743, 1220, 1277
MspR9I	CCNGG	3 cut(s)	607, 852, 1221
MunI	CAATTG	1 cut(s)	1233
MvaI	CCWGG	2 cut(s)	607, 852
MwoI	GCNNNNNNNGC	5 cut(s)	538, 587, 602, 622, 969
NciI	CCSGG	1 cut(s)	1221
NcoI	CCATGG	1 cut(s)	941
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	4 cut(s)	158, 318, 354, 739
NlaIII	CATG	8 cut(s)	115, 137, 605, 891, 945, 967, 972, 1213
NlaIV	GGNNCC	2 cut(s)	495, 1224
NmeAIII	GCCGAG	1 cut(s)	1072
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	967
NspV	TTCGAA	1 cut(s)	1322
PaeI	GCATGC	1 cut(s)	967
PceI	AGGCCT	2 cut(s)	295, 439
PfeI	GAWTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	979
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	1085
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	605, 850
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	605, 850
PspN4I	GGNNCC	2 cut(s)	495, 1224
PspPI	GGNCC	3 cut(s)	271, 953, 1223
PspPPI	RGGWCCY	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	631, 813
RsaNI	GTAC	2 cut(s)	630, 812
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	534
SalI	GTCGAC	1 cut(s)	1022
SaqAI	TTAA	2 cut(s)	791, 1082
Sau3AI	GATC	4 cut(s)	158, 318, 354, 739
Sau96I	GGNCC	3 cut(s)	271, 953, 1223
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	607, 852, 1221
SduI	GDGCHC	2 cut(s)	534, 787
SfaNI	GCATC	2 cut(s)	46, 1261
SfuI	TTCGAA	1 cut(s)	1322
SinI	GGWCC	2 cut(s)	271, 953
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	206, 215
SmoI	CTYRAG	2 cut(s)	206, 215
SphI	GCATGC	1 cut(s)	967
Sse9I	AATT	7 cut(s)	73, 337, 388, 500, 1233, 1318, 1324
SseBI	AGGCCT	2 cut(s)	295, 439
SsiI	CCGC	3 cut(s)	872, 1118, 1194
SspMI	CTAG	3 cut(s)	44, 702, 816
SstI	GAGCTC	1 cut(s)	534
StuI	AGGCCT	2 cut(s)	295, 439
StyD4I	CCNGG	3 cut(s)	605, 850, 1219
StyI	CCWWGG	1 cut(s)	941
TaaI	ACNGT	5 cut(s)	639, 667, 782, 1058, 1283
TaiI	ACGT	2 cut(s)	691, 1088
TaqI	TCGA	3 cut(s)	805, 1023, 1322
TasI	AATT	7 cut(s)	73, 337, 388, 500, 1233, 1318, 1324
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	791, 1082
Tru9I	TTAA	2 cut(s)	791, 1082
TscAI	CASTG	6 cut(s)	39, 184, 328, 642, 701, 1288
TseFI	GTSAC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	582
TspRI	CASTG	6 cut(s)	39, 184, 328, 642, 701, 1288
Van91I	CCANNNNNTGG	1 cut(s)	979
VpaK11BI	GGWCC	2 cut(s)	271, 953
XapI	RAATTY	1 cut(s)	1324
XceI	RCATGY	1 cut(s)	967
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 980
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	3 cut(s)	44, 702, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.