Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

6798832 .. 6800977

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTACCGTTAATCAGCAGCTTTACCGGCCAATACTCACCGCCGTCGGAAGTGACTGCCGGCGGCATGTAACCACCCGTTTCCTCCCTGTTCCGAGACGCAACGTAACCACTCGTCTACGGCCAATTTTGAGTCTTGAGGTGGGCAAGGAAGTGGCTTCAGCACCGTCGACAGTGAACATGGAAGAGCTCGTCGGATTCTTGTACGAGGATCTTCCTCACCTTTTCGACGACCAAGGAATCGATAAAACGGCGTACGATGAGCGCGTGAAGTTCAGAGACCCAATCACTAAGCACGACACCATCTCTGGCTATCTCTTCAACATTGCTTTCCTCAAGAATATCTTCACTCCTCAGTTTCAGCTTCACTGGGCTAAACAGACAGGTCCATATGAGATCACTACGAGATGGACAATGGTGATGAAGTTCATACCTTTACCATGGAAACCAGAACTTGTCTTCACTGGATTATCAATCATGGAAGTTAATCCTGAAACTAACAAATTTTGTAGTCATCTGGACTTGTGGGATTCTATCAAGAACAATGACTACTTTTCTCTTGAAGGTCTTGTTGATGTTTTTAAGCAGTTACGGATATATAAAACGCCAGACTTGGAAACTCCAAAGTATCAAATACTGAAAAGAACAGCAAACTATGAGGTTAGAAACTATGAGCCCTTCATTGTGGTGGAGACAATTGGTGACAAGCTTTCTGGTTCTTCAGGTTTCAACAATGTTGCTGGCTACATATTTGGAAAGAACTCGACCATGGAGAAAATACCAATGACAACTCCAGTGTTTACTCAAACAACAGATACTCAACTCTCTTCTGATGTCTCTGTACAAATTGTTATTCCATCAGGAAAAGATCTTAGCAGCTTACCAATGCCTAATGAAGAAAAGGTAAATTTGAAGAAGTTGGAAGGCGGTTTTGCTGCAGCAGTGAAATTCAGTGGTAAACCGACAGAGGATGTTGTCCAAGCAAAAGAGAATGAACTGAGGAGCAGTCTGAGTAAAGATGGTCTGAGAGCTAAGAAAGGTTGTATGCTTGCTCGTTACAACGATCCAGGACGAACATGGAACTTCATAATGAGGAACGAAGTTATCATATGGCTTGAAGATTTCAGTCTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

378

Amino Acids

43.16

Weight (kDa)

6.98

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	63 - 172	2.4e-29	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	205 - 370	1.2e-41	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	118, 170
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	42, 64, 927
AclWI	GGATC	2 cut(s)	219, 1058
AcoI	YGGCCR	2 cut(s)	29, 122
AcsI	RAATTY	3 cut(s)	503, 907, 947
AcuI	CTGAAG	2 cut(s)	144, 705
AfaI	GTAC	3 cut(s)	206, 257, 843
AgsI	TTSAA	5 cut(s)	322, 563, 730, 913, 1118
AjnI	CCWGG	1 cut(s)	1066
AluBI	AGCT	6 cut(s)	22, 190, 364, 709, 879, 1031
AluI	AGCT	6 cut(s)	22, 190, 364, 709, 879, 1031
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	4 cut(s)	91, 273, 686, 841
AlwI	GGATC	2 cut(s)	219, 1058
AoxI	GGCC	2 cut(s)	29, 122
ApeKI	GCWGC	4 cut(s)	19, 876, 935, 938
ApoI	RAATTY	3 cut(s)	503, 907, 947
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	31, 212, 430, 713
AvaII	GGWCC	1 cut(s)	386
BanII	GRGCYC	2 cut(s)	192, 678
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	31, 888, 922, 950
BccI	CCATC	4 cut(s)	311, 402, 865, 1013
BceAI	ACGGC	3 cut(s)	29, 137, 267
BciT130I	CCWGG	1 cut(s)	1068
BcoDI	GTCTC	4 cut(s)	91, 273, 686, 841
BfmI	CTRYAG	1 cut(s)	936
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	5 cut(s)	20, 65, 877, 936, 939
BlsI	GCNGC	5 cut(s)	21, 66, 878, 937, 940
Bme1390I	CCNGG	1 cut(s)	1068
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	1068
BmrI	ACTGGG	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	2 cut(s)	158, 320
Bsa29I	ATCGAT	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	235, 440, 768
Bse118I	RCCGGY	2 cut(s)	27, 60
Bse1I	ACTGG	3 cut(s)	374, 469, 794
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	1068
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	235, 440, 768
BseGI	GGATG	1 cut(s)	976
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	4 cut(s)	368, 989, 1001, 1016
BseNI	ACTGG	3 cut(s)	374, 469, 794
BseRI	GAGGAG	2 cut(s)	342, 1015
BseXI	GCAGC	4 cut(s)	31, 888, 922, 950
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	31, 124
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	28, 61
BsiWI	CGTACG	1 cut(s)	255
BsmAI	GTCTC	4 cut(s)	91, 273, 686, 841
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	31, 124
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	192, 678
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	211, 396, 868, 1063
Bsp19I	CCATGG	2 cut(s)	440, 768
BspACI	CCGC	3 cut(s)	42, 64, 927
BspANI	GGCC	2 cut(s)	31, 124
BspCNI	CTCAG	4 cut(s)	367, 990, 1002, 1017
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	2 cut(s)	219, 1058
BspQI	GCTCTTC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	2 cut(s)	27, 60
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	3 cut(s)	374, 469, 794
BssAI	RCCGGY	2 cut(s)	27, 60
BssECI	CCNNGG	3 cut(s)	235, 440, 768
BssMI	GATC	4 cut(s)	211, 396, 868, 1063
BssT1I	CCWWGG	3 cut(s)	235, 440, 768
Bst2UI	CCWGG	1 cut(s)	1068
Bst4CI	ACNGT	3 cut(s)	10, 168, 175
Bst6I	CTCTTC	3 cut(s)	180, 323, 832
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	3 cut(s)	62, 742, 1050
BstDEI	CTNAG	7 cut(s)	291, 354, 872, 998, 1010, 1025, 1032
BstDSI	CCRYGG	2 cut(s)	440, 768
BstF5I	GGATG	1 cut(s)	976
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	4 cut(s)	214, 399, 871, 1066
BstMAI	GTCTC	4 cut(s)	91, 273, 686, 841
BstMBI	GATC	4 cut(s)	211, 396, 868, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	1068
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	1066
BstSFI	CTRYAG	1 cut(s)	936
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	4 cut(s)	31, 888, 922, 950
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	211, 868
BstYI	RGATCY	2 cut(s)	211, 868
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	31, 124
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	2 cut(s)	440, 768
BtsCI	GGATG	1 cut(s)	976
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	6 cut(s)	180, 367, 462, 801, 948, 958
Cac8I	GCNNGC	3 cut(s)	62, 742, 1050
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	2 cut(s)	27, 60
Cfr13I	GGNCC	1 cut(s)	386
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	205, 256, 842
CviAII	CATG	6 cut(s)	68, 181, 441, 478, 769, 1077
CviQI	GTAC	3 cut(s)	205, 256, 842
DdeI	CTNAG	7 cut(s)	291, 354, 872, 998, 1010, 1025, 1032
DpnI	GATC	4 cut(s)	213, 398, 870, 1065
DpnII	GATC	4 cut(s)	211, 396, 868, 1063
EaeI	YGGCCR	2 cut(s)	29, 122
Eam1104I	CTCTTC	3 cut(s)	180, 323, 832
EarI	CTCTTC	3 cut(s)	180, 323, 832
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	3 cut(s)	235, 440, 768
Eco24I	GRGCYC	2 cut(s)	192, 678
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	144, 705
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	1066
EcoT14I	CCWWGG	3 cut(s)	235, 440, 768
EcoT38I	GRGCYC	2 cut(s)	192, 678
ErhI	CCWWGG	3 cut(s)	235, 440, 768
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	6 cut(s)	71, 184, 444, 481, 772, 1080
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	6 cut(s)	67, 180, 440, 477, 768, 1076
FauNDI	CATATG	2 cut(s)	391, 1109
FblI	GTMKAC	2 cut(s)	118, 170
Fnu4HI	GCNGC	5 cut(s)	20, 65, 877, 936, 939
FokI	GGATG	1 cut(s)	983
FriOI	GRGCYC	2 cut(s)	192, 678
Fsp4HI	GCNGC	5 cut(s)	20, 65, 877, 936, 939
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	20, 65, 877, 936, 939
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	31, 124
HapII	CCGG	2 cut(s)	28, 61
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	6 cut(s)	71, 184, 444, 481, 772, 1080
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	133, 198, 240, 530
HpaII	CCGG	2 cut(s)	28, 61
HphI	GGTGA	4 cut(s)	31, 212, 430, 713
Hpy166II	GTNNAC	5 cut(s)	119, 171, 178, 801, 959
Hpy188I	TCNGA	7 cut(s)	50, 96, 197, 278, 832, 1011, 1026
Hpy188III	TCNNGA	8 cut(s)	137, 337, 491, 518, 538, 560, 861, 1130
Hpy8I	GTNNAC	5 cut(s)	119, 171, 178, 801, 959
Hpy99I	CGWCG	4 cut(s)	50, 172, 197, 233
HpyAV	CCTTC	3 cut(s)	557, 688, 917
HpyCH4III	ACNGT	3 cut(s)	10, 168, 175
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	7 cut(s)	291, 354, 872, 998, 1010, 1025, 1032
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	71, 184, 444, 481, 772, 1080
HspAI	GCGC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	60
KroNI	GCCGGC	1 cut(s)	62
Kzo9I	GATC	4 cut(s)	211, 396, 868, 1063
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	1002
Lsp1109I	GCAGC	4 cut(s)	31, 888, 922, 950
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	6 cut(s)	53, 70, 106, 588, 701, 1055
MalI	GATC	4 cut(s)	213, 398, 870, 1065
MboI	GATC	4 cut(s)	211, 396, 868, 1063
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	211, 868
MhlI	GDGCHC	2 cut(s)	192, 678
MluCI	AATT	6 cut(s)	126, 503, 696, 846, 907, 947
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	3 cut(s)	28, 175, 900
MroNI	GCCGGC	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	3 cut(s)	12, 486, 582
MslI	CAYNNNNRTG	1 cut(s)	686
MspI	CCGG	2 cut(s)	28, 61
MspR9I	CCNGG	1 cut(s)	1068
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	1068
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	28
NaeI	GCCGGC	1 cut(s)	62
NcoI	CCATGG	2 cut(s)	440, 768
NdeI	CATATG	2 cut(s)	391, 1109
NdeII	GATC	4 cut(s)	211, 396, 868, 1063
NgoMIV	GCCGGC	1 cut(s)	60
NlaIII	CATG	6 cut(s)	71, 184, 444, 481, 772, 1080
NmuCI	GTSAC	2 cut(s)	53, 701
NspI	RCATGY	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	198, 240, 530
Pfl23II	CGTACG	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	1066
PkrI	GCNGC	5 cut(s)	21, 66, 878, 937, 940
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	1066
PspGI	CCWGG	1 cut(s)	1066
PspLI	CGTACG	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	386
PsrI	GAACNNNNNNTAC	2 cut(s)	533, 565
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	211, 868
RsaI	GTAC	3 cut(s)	206, 257, 843
RsaNI	GTAC	3 cut(s)	205, 256, 842
RseI	CAYNNNNRTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	12, 486, 582
SatI	GCNGC	5 cut(s)	20, 65, 877, 936, 939
Sau3AI	GATC	4 cut(s)	211, 396, 868, 1063
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	1068
SduI	GDGCHC	2 cut(s)	192, 678
SfcI	CTRYAG	1 cut(s)	936
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	137, 335
SmoI	CTYRAG	2 cut(s)	137, 335
Sse9I	AATT	6 cut(s)	126, 503, 696, 846, 907, 947
SsiI	CCGC	3 cut(s)	42, 64, 927
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	1066
StyI	CCWWGG	3 cut(s)	235, 440, 768
TaaI	ACNGT	3 cut(s)	10, 168, 175
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	170, 228, 243, 764
TasI	AATT	6 cut(s)	126, 503, 696, 846, 907, 947
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	198, 240, 530
Tru1I	TTAA	3 cut(s)	12, 486, 582
Tru9I	TTAA	3 cut(s)	12, 486, 582
TscAI	CASTG	6 cut(s)	180, 374, 469, 801, 948, 958
TseFI	GTSAC	2 cut(s)	53, 701
TseI	GCWGC	4 cut(s)	19, 876, 935, 938
Tsp45I	GTSAC	2 cut(s)	53, 701
TspDTI	ATGAA	6 cut(s)	418, 437, 670, 909, 1008, 1075
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	6 cut(s)	180, 374, 469, 801, 948, 958
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	3 cut(s)	503, 907, 947
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1074
XmiI	GTMKAC	2 cut(s)	118, 170
XmnI	GAANNNNTTC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.