Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Forward (+)

203122 .. 206105

Gene Structure 2984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCGTCCATGCTGAATGCCCCACCCAATTGTATCTCTGTTCAGCCACAAAAGCCGACACTGCTGCCTGGAACTGCGACCAGTAGAGGATTGGGTGCTACTCGGAGTATCAATCTGAAGCAAAGACTTCCATCACCAGCTGTGAACAAGATGATGATCCCAAAGATGTCAATTTCAGCCCTACCCCTTGACAACCCTACTAAGTCCAACAACAAGTTTGACATTCCTATCATGGTAAACGGTTGTAATGGTAAAATGGGGAAGGCCATTATCAGTGCAGCGGAGTCTGCTGGACTCGATGTGGTTCCCGTCTCCTTTGGATCTGCTCAAGAGTCTGGCCAAACCGTCCAAGTCGGCACAAAGGAGATTCTAGTGCATGGTCCTTCTCAAAGAGAAAGCATACTTGAATCTCTTCTTGTCAAATATCCCAATTTGATTGTGGTCGACTTCACTGTCCCTTCTGCAGTAAACGATAATGCAGAGCTATATTGCAGAGTCGGAGTGCCCTTTGTGATGGGAACAACCGGCGGAGATAGGGATCGGTTGTATAAGGCTGTAGAAGACTCAAAAGTCTATGCAGTAATTTCCCCTCAAATGGGGAAACAGGTCGTTGCATTTCTTGCAACCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCTTGCAGGTGATGGAATCTCATCAAGCAAGTAAACTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGAGTGTCTTTTGATATGGATCAGATCCAATTGATAAGGGATCCCCAGCAACAGCTAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTGACTTCACCCGATCTAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAAAGGCAGACAAGCGGATATATGATATGAGGGATGTCCTGCGAGAGGGTAACATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

349

Amino Acids

37.91

Weight (kDa)

7.08

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DapB_N	PF01113	75 - 199	1.2e-18	Dihydrodipicolinate reductase, N-terminus
DapB_C	PF05173	203 - 343	1.8e-14	Dihydrodipicolinate reductase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
AasI	GACNNNNNNGTC	2 cut(s)	452, 569
Acc36I	ACCTGC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	3 cut(s)	281, 528, 1003
AclWI	GGATC	7 cut(s)	151, 328, 546, 778, 786, 794, 807
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	949
AfiI	CCNNNNNNNGG	4 cut(s)	595, 596, 757, 1033
AgsI	TTSAA	2 cut(s)	407, 990
AjnI	CCWGG	2 cut(s)	67, 652
AluBI	AGCT	4 cut(s)	140, 484, 659, 814
AluI	AGCT	4 cut(s)	140, 484, 659, 814
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	7 cut(s)	151, 328, 546, 778, 786, 794, 807
AoxI	GGCC	2 cut(s)	264, 337
ApeKI	GCWGC	2 cut(s)	64, 278
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	126, 694, 873
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	799
BbsI	GAAGAC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	51, 290
BccI	CCATC	4 cut(s)	139, 508, 679, 814
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	69, 654
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	371, 815
BfmI	CTRYAG	2 cut(s)	462, 555
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	65, 279
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	2 cut(s)	66, 280
Bme1390I	CCNGG	2 cut(s)	69, 654
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	306, 801
BmrFI	CCNGG	2 cut(s)	69, 654
BmsI	GCATC	1 cut(s)	946
BpiI	GAAGAC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	312
BsaBI	GATNNNNATC	3 cut(s)	155, 537, 777
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	627
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	595, 596, 757, 1033
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	81
Bse8I	GATNNNNATC	3 cut(s)	155, 537, 777
BseBI	CCWGG	2 cut(s)	69, 654
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	1027
BseJI	GATNNNNATC	3 cut(s)	155, 537, 777
BseLI	CCNNNNNNNGG	4 cut(s)	595, 596, 757, 1033
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	851
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	51, 290
BseYI	CCCAGC	1 cut(s)	804
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	266, 339
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	4 cut(s)	595, 596, 757, 1033
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	266, 339
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	3 cut(s)	281, 528, 1003
BspANI	GGCC	2 cut(s)	266, 339
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	306, 801
BspMAI	CTGCAG	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	7 cut(s)	151, 328, 546, 778, 786, 794, 807
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	69, 654
Bst4CI	ACNGT	5 cut(s)	242, 346, 454, 895, 952
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstDEI	CTNAG	4 cut(s)	201, 642, 729, 975
BstDSI	CCRYGG	1 cut(s)	627
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	1 cut(s)	1027
BstKTI	GATC	8 cut(s)	159, 323, 541, 781, 786, 802, 889, 932
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 287, 620
BstNI	CCWGG	2 cut(s)	69, 654
BstNSI	RCATGY	1 cut(s)	1045
BstSCI	CCNGG	2 cut(s)	67, 652
BstSFI	CTRYAG	2 cut(s)	462, 555
BstSLI	GKGCMC	1 cut(s)	507
BstV1I	GCAGC	2 cut(s)	51, 290
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	3 cut(s)	320, 783, 799
BstYI	RGATCY	3 cut(s)	320, 783, 799
BsuRI	GGCC	2 cut(s)	266, 339
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	1027
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 280, 450
BveI	ACCTGC	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	948
CviAII	CATG	6 cut(s)	10, 232, 377, 628, 854, 1042
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	4 cut(s)	201, 642, 729, 975
DpnI	GATC	8 cut(s)	158, 322, 540, 780, 785, 801, 888, 931
DpnII	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
DrdI	GACNNNNNNGTC	2 cut(s)	452, 569
DseDI	GACNNNNNNGTC	2 cut(s)	452, 569
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	67, 652
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	6 cut(s)	13, 235, 380, 631, 857, 1045
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	6 cut(s)	9, 231, 376, 627, 853, 1041
FauNDI	CATATG	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	65, 279
FokI	GGATG	1 cut(s)	1034
Fsp4HI	GCNGC	2 cut(s)	65, 279
FspBI	CTAG	2 cut(s)	371, 815
GluI	GCNGC	2 cut(s)	65, 279
GsaI	CCCAGC	1 cut(s)	808
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	266, 339
HapII	CCGG	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	13, 235, 380, 631, 857, 1045
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	8 cut(s)	284, 294, 332, 367, 407, 495, 563, 689
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	3 cut(s)	126, 694, 873
Hpy166II	GTNNAC	5 cut(s)	145, 238, 445, 469, 707
Hpy188I	TCNGA	5 cut(s)	105, 117, 500, 783, 876
Hpy188III	TCNNGA	4 cut(s)	329, 720, 751, 833
Hpy8I	GTNNAC	5 cut(s)	145, 238, 445, 469, 707
HpyAV	CCTTC	4 cut(s)	256, 393, 468, 973
HpyCH4III	ACNGT	5 cut(s)	242, 346, 454, 895, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 287, 620
HpyF3I	CTNAG	4 cut(s)	201, 642, 729, 975
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	13, 235, 380, 631, 857, 1045
Kzo9I	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
LmnI	GCTCC	2 cut(s)	656, 838
Lsp1109I	GCAGC	2 cut(s)	51, 290
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	2 cut(s)	371, 815
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	8 cut(s)	158, 322, 540, 780, 785, 801, 888, 931
MboI	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
MboII	GAAGA	2 cut(s)	404, 572
MfeI	CAATTG	2 cut(s)	28, 788
MflI	RGATCY	3 cut(s)	320, 783, 799
MhlI	GDGCHC	1 cut(s)	507
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	8 cut(s)	28, 171, 430, 582, 633, 647, 788, 963
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	5 cut(s)	288, 293, 341, 504, 557
MmeI	TCCRAC	2 cut(s)	231, 478
MnlI	CCTC	6 cut(s)	80, 600, 829, 937, 1011, 1027
Mox20I	TGGCCA	1 cut(s)	339
Mph1103I	ATGCAT	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	140, 281
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	69, 654
MunI	CAATTG	2 cut(s)	28, 788
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	69, 654
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 287, 620
NcoI	CCATGG	1 cut(s)	627
NdeI	CATATG	1 cut(s)	864
NdeII	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
NlaIII	CATG	6 cut(s)	13, 235, 380, 631, 857, 1045
NlaIV	GGNNCC	2 cut(s)	306, 801
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	1045
PaqCI	CACCTGC	1 cut(s)	670
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	367, 407, 689
PflMI	CCANNNNNTGG	1 cut(s)	757
PfoI	TCCNGGA	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	66, 280
PleI	GAGTC	5 cut(s)	288, 292, 340, 503, 557
PpsI	GAGTC	5 cut(s)	288, 292, 340, 503, 557
Psp6I	CCWGG	2 cut(s)	67, 652
PspFI	CCCAGC	1 cut(s)	804
PspGI	CCWGG	2 cut(s)	67, 652
PspN4I	GGNNCC	2 cut(s)	306, 801
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	3 cut(s)	320, 783, 799
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
SalI	GTCGAC	1 cut(s)	443
SatI	GCNGC	2 cut(s)	65, 279
Sau3AI	GATC	8 cut(s)	156, 320, 538, 778, 783, 799, 886, 929
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	5 cut(s)	288, 293, 341, 504, 557
ScrFI	CCNGG	2 cut(s)	69, 654
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	7 cut(s)	142, 486, 609, 661, 684, 816, 984
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	2 cut(s)	462, 555
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	8 cut(s)	28, 171, 430, 582, 633, 647, 788, 963
SsiI	CCGC	3 cut(s)	281, 528, 1003
SspMI	CTAG	2 cut(s)	371, 815
StyD4I	CCNGG	2 cut(s)	67, 652
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	5 cut(s)	242, 346, 454, 895, 952
TaqI	TCGA	2 cut(s)	297, 444
TasI	AATT	8 cut(s)	28, 171, 430, 582, 633, 647, 788, 963
TfiI	GAWTC	3 cut(s)	367, 407, 689
TscAI	CASTG	3 cut(s)	66, 280, 457
TseI	GCWGC	2 cut(s)	64, 278
TspDTI	ATGAA	2 cut(s)	851, 974
TspRI	CASTG	3 cut(s)	66, 280, 457
Van91I	CCANNNNNTGG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	1031
XceI	RCATGY	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	3 cut(s)	88, 436, 634
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	371, 815
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.