Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

2136488 .. 2140013

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTAGCACACAGCTTTCCGACCAAGTTTTCAGGCCTATCCCCGCCGTGTGCGTCAGTTTACGGCGGCTGAGCACCACCAAAGCGAATAAACTACCATGCCATCCACGTTCCAAAGCCTTGAAACACAAACACTTGGGGCTTCAAACAAGGCAAAACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTAGACCAAAGCCCGCCAAAATCAACCGTCGACATGGAAAGGGTGGTCGATTTTCTGTACCAGGATTTAGTTCACTTGTTTGATGATCAAGGAATTGATCGGACGGCGTATGATGAACGTGTGAAGTTCAGGGATCCAATCACCAAGCATGATTCTATAACTGGCTATTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCACTGGGTAAAACAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAGTTCGTCCCTCTGCCTTGGAAACCAGAATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCCGAAACTGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATTAAGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGACATACTAAAGAGAACAGCAAATTATGAGGTAAGAAAGTACTCCCCTTTTATAGTGGTAGAAGGAAGTGCAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTTGGAAAGAACTCAAAAATGGAAAAGATACCAATGACAACTCCGGTGTTCACTGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTTGACAAGGATTTAAGCAGTTTACCAGATCCTAATGCAGAAACAATTAGCTTGAAAAAAATGGAAGAAGGCATTGCTGCTGTTATCAAGTTTAGTGGGAAGCCTACCGAAGATGTTGTTCGTGAAAAGGAGAATTTGCTGCGTGCTAGTCTTATCAGAGATGGTCTCAAACCTAAGGCCGGGTGTATGCTTGCTCGTTACAATGACCCTGGCCGAACTTGGAGCTTTATAATGAGAAATGAAGTGCTGATATGGCTGGAGGAATTCACATTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

392

Amino Acids

44.71

Weight (kDa)

9.01

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	77 - 186	1.9e-28	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	219 - 383	1.1e-37	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1127
AccI	GTMKAC	2 cut(s)	192, 219
AciI	CCGC	3 cut(s)	45, 67, 203
AclWI	GGATC	4 cut(s)	317, 330, 766, 920
AcoI	YGGCCR	1 cut(s)	1108
AcsI	RAATTY	3 cut(s)	863, 1030, 1160
AfaI	GTAC	4 cut(s)	248, 511, 713, 788
AfiI	CCNNNNNNNGG	3 cut(s)	539, 540, 1076
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	7 cut(s)	124, 146, 364, 379, 625, 772, 952
AhdI	GACNNNNNGTC	1 cut(s)	751
AjnI	CCWGG	2 cut(s)	249, 1105
AluBI	AGCT	7 cut(s)	16, 186, 631, 751, 764, 948, 1122
AluI	AGCT	7 cut(s)	16, 186, 631, 751, 764, 948, 1122
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	1067
AlwI	GGATC	4 cut(s)	317, 330, 766, 920
AoxI	GGCC	3 cut(s)	35, 1074, 1108
ApeKI	GCWGC	4 cut(s)	552, 628, 974, 1036
ApoI	RAATTY	3 cut(s)	863, 1030, 1160
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	1078
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	1071
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BamHI	GGATCC	1 cut(s)	322
BbsI	GAAGAC	3 cut(s)	379, 386, 884
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	564, 640, 961, 1023
BccI	CCATC	3 cut(s)	111, 887, 1052
BceAI	ACGGC	3 cut(s)	32, 80, 309
BciT130I	CCWGG	2 cut(s)	251, 1107
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	1078
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	6, 1044
BfmI	CTRYAG	2 cut(s)	550, 600
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	5 cut(s)	68, 553, 629, 975, 1037
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	5 cut(s)	69, 554, 630, 976, 1038
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	3 cut(s)	251, 1078, 1107
Bme18I	GGWCC	1 cut(s)	428
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	251, 1078, 1107
BmrI	ACTGGG	3 cut(s)	421, 549, 792
BmsI	GCATC	2 cut(s)	847, 860
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	3 cut(s)	421, 549, 792
BpiI	GAAGAC	3 cut(s)	379, 386, 884
BplI	GAGNNNNNCTC	2 cut(s)	1047, 1079
BpmI	CTGGAG	2 cut(s)	633, 1175
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	1078
BsaI	GGTCTC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	482, 1105
BsaWI	WCCGGW	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	3 cut(s)	539, 540, 1076
Bse1I	ACTGG	6 cut(s)	355, 403, 416, 511, 544, 787
Bse21I	CCTNAGG	1 cut(s)	1071
Bse3DI	GCAATG	2 cut(s)	366, 969
BseBI	CCWGG	2 cut(s)	251, 1107
BseDI	CCNNGG	2 cut(s)	482, 1105
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	539, 540, 1076
BseMI	GCAATG	2 cut(s)	366, 969
BseMII	CTCAG	3 cut(s)	62, 623, 837
BseNI	ACTGG	6 cut(s)	355, 403, 416, 511, 544, 787
BseXI	GCAGC	4 cut(s)	564, 640, 961, 1023
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	37, 1076, 1110
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	836, 1077
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	539, 540, 1076
BsmAI	GTCTC	1 cut(s)	1067
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	37, 1076, 1110
Bso31I	GGTCTC	1 cut(s)	1067
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	3 cut(s)	45, 67, 203
BspANI	GGCC	3 cut(s)	37, 1076, 1110
BspCNI	CTCAG	3 cut(s)	63, 624, 838
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	554
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	317, 330, 766, 920
BspTNI	GGTCTC	1 cut(s)	1067
BsrDI	GCAATG	2 cut(s)	366, 969
BsrI	ACTGG	6 cut(s)	355, 403, 416, 511, 544, 787
BssECI	CCNNGG	2 cut(s)	482, 1105
BssMI	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	251, 1107
Bst4CI	ACNGT	3 cut(s)	217, 385, 423
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	7, 203, 1041, 1089
BstDEI	CTNAG	6 cut(s)	71, 182, 187, 632, 846, 1071
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	6 cut(s)	277, 289, 325, 501, 761, 928
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	857, 1150
BstNI	CCWGG	2 cut(s)	251, 1107
BstSCI	CCNGG	3 cut(s)	249, 1076, 1105
BstSFI	CTRYAG	2 cut(s)	550, 600
BstV1I	GCAGC	4 cut(s)	564, 640, 961, 1023
BstV2I	GAAGAC	3 cut(s)	379, 386, 884
BstX2I	RGATCY	2 cut(s)	322, 925
BstYI	RGATCY	2 cut(s)	322, 925
Bsu36I	CCTNAGG	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	37, 1076, 1110
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	409, 504, 843
Cac8I	GCNNGC	4 cut(s)	7, 203, 1041, 1089
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	247, 510, 712, 787
CspCI	CAANNNNNGTGG	2 cut(s)	973, 1008
CviAII	CATG	4 cut(s)	99, 223, 338, 557
CviQI	GTAC	4 cut(s)	247, 510, 712, 787
DdeI	CTNAG	6 cut(s)	71, 182, 187, 632, 846, 1071
DpnI	GATC	6 cut(s)	276, 288, 324, 500, 760, 927
DpnII	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
DriI	GACNNNNNGTC	1 cut(s)	751
EaeI	YGGCCR	1 cut(s)	1108
Eam1105I	GACNNNNNGTC	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	482
Eco147I	AGGCCT	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	1067
Eco47I	GGWCC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	1071
EcoRI	GAATTC	1 cut(s)	1160
EcoRII	CCWGG	2 cut(s)	249, 1105
EcoT14I	CCWWGG	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	4 cut(s)	102, 226, 341, 560
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 876, 908
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	4 cut(s)	98, 222, 337, 556
FauI	CCCGC	2 cut(s)	52, 210
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	192, 219
Fnu4HI	GCNGC	5 cut(s)	68, 553, 629, 975, 1037
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	68, 553, 629, 975, 1037
FspBI	CTAG	2 cut(s)	6, 1044
GluI	GCNGC	5 cut(s)	68, 553, 629, 975, 1037
GsuI	CTGGAG	2 cut(s)	633, 1175
HaeIII	GGCC	3 cut(s)	37, 1076, 1110
HapII	CCGG	2 cut(s)	836, 1077
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	102, 226, 341, 560
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	3 cut(s)	341, 525, 572
HpaII	CCGG	2 cut(s)	836, 1077
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	8 cut(s)	62, 193, 220, 262, 453, 562, 843, 920
Hpy188I	TCNGA	4 cut(s)	22, 291, 856, 1055
Hpy188III	TCNNGA	5 cut(s)	376, 426, 650, 756, 1019
Hpy8I	GTNNAC	8 cut(s)	62, 193, 220, 262, 453, 562, 843, 920
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	382, 599, 728, 959
HpyCH4III	ACNGT	3 cut(s)	217, 385, 423
HpyCH4IV	ACGT	2 cut(s)	109, 307
HpyCH4V	TGCA	4 cut(s)	409, 552, 743, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	857, 1150
HpyF3I	CTNAG	6 cut(s)	71, 182, 187, 632, 846, 1071
HpySE526I	ACGT	2 cut(s)	109, 307
Hsp92II	CATG	4 cut(s)	102, 226, 341, 560
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
LmnI	GCTCC	1 cut(s)	1119
Lsp1109I	GCAGC	4 cut(s)	564, 640, 961, 1023
LweI	GCATC	2 cut(s)	847, 860
MaeI	CTAG	2 cut(s)	6, 1044
MaeII	ACGT	2 cut(s)	109, 307
MaeIII	GTNAC	2 cut(s)	778, 1094
MalI	GATC	6 cut(s)	276, 288, 324, 500, 760, 927
MboI	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
MboII	GAAGA	7 cut(s)	379, 391, 493, 595, 884, 974, 1019
MflI	RGATCY	2 cut(s)	322, 925
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	7 cut(s)	282, 494, 694, 863, 942, 1030, 1160
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	486, 627, 694, 841, 1150
MseI	TTAA	2 cut(s)	579, 911
MspA1I	CMGCKG	2 cut(s)	631, 764
MspI	CCGG	2 cut(s)	836, 1077
MspR9I	CCNGG	3 cut(s)	251, 1078, 1107
MvaI	CCWGG	2 cut(s)	251, 1107
MwoI	GCNNNNNNNGC	2 cut(s)	857, 1150
NciI	CCSGG	1 cut(s)	1078
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	102, 226, 341, 560
NlaIV	GGNNCC	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	341, 525, 572
PkrI	GCNGC	5 cut(s)	69, 554, 630, 976, 1038
PsiI	TTATAA	1 cut(s)	1127
Psp6I	CCWGG	2 cut(s)	249, 1105
PspGI	CCWGG	2 cut(s)	249, 1105
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	554
PsuI	RGATCY	2 cut(s)	322, 925
PvuII	CAGCTG	2 cut(s)	631, 764
RsaI	GTAC	4 cut(s)	248, 511, 713, 788
RsaNI	GTAC	4 cut(s)	247, 510, 712, 787
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	579, 911
SatI	GCNGC	5 cut(s)	68, 553, 629, 975, 1037
Sau3AI	GATC	6 cut(s)	274, 286, 322, 498, 758, 925
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	713
ScrFI	CCNGG	3 cut(s)	251, 1078, 1107
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	2 cut(s)	847, 860
SfcI	CTRYAG	2 cut(s)	550, 600
SinI	GGWCC	1 cut(s)	428
Sse9I	AATT	7 cut(s)	282, 494, 694, 863, 942, 1030, 1160
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	45, 67, 203
SspMI	CTAG	2 cut(s)	6, 1044
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	3 cut(s)	249, 1076, 1105
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	3 cut(s)	217, 385, 423
TaiI	ACGT	2 cut(s)	112, 310
TaqI	TCGA	2 cut(s)	219, 237
TasI	AATT	7 cut(s)	282, 494, 694, 863, 942, 1030, 1160
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	341, 525, 572
Tru1I	TTAA	2 cut(s)	579, 911
Tru9I	TTAA	2 cut(s)	579, 911
TscAI	CASTG	3 cut(s)	416, 511, 850
TseI	GCWGC	4 cut(s)	552, 628, 974, 1036
TspDTI	ATGAA	4 cut(s)	318, 450, 479, 1152
TspRI	CASTG	3 cut(s)	416, 511, 850
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	863, 1030, 1160
XmiI	GTMKAC	2 cut(s)	192, 219
XspI	CTAG	2 cut(s)	6, 1044
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.