Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

3350985 .. 3353397

Gene Structure 2413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGGTTATATGAAGACATTGTAGCCACTAATTTCAGAAATGAACACCAACCAATCAACTTGTGGCTAAGATGTTTCATAGCCCAAAAAGCAAGTTGCAATGCATGGGCACGCACCAAACCAACACAGCCACACGCGCACCACAACCACCAAATGGCTAGCACACAACTTTCCGACCAAGTTTTCAGGCCAATCCCTGCAGTGTGCGTCAGTTTGCGGCGACTGAGCACCACCAAATCGAATAAACTACCATGCCACCCACGTCCCAAAGCCTTGAAACACAAACACTTGGGGCTTCAAACAGCGCAGAACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTAGACCAAAGCCCGCCAAAATCAACCGTCGACATGGAACGGTTAGTCGATTTTCTGTACCAGGATTTAGTGCACTTGTTTGATAATCAAGGAATTGATCGGACGGCGTATGATGAACGTGTGAAGTTCAGGGATCCAATCACCAAGCATGACTCTATAACTGGCTACTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCATTGGGTCAAACAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAATTCATCCCTCTGCCTTGGAAACCAGTATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCTGAAACCGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATAAGGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGAGATACTAAAGAGAACAGCAAATTATGAGGTAAGAAAGTACGCCCCTTTTATAGTGGTAGAAGGAAGTGTAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTCGGAAAGAACTCGAAAATGGAGAAGATACCAATGACAACTCCAGTGTTCACAGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTAGACAAGGATTTAAGCAGGTGGAGAATTAATAGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

364

Amino Acids

41.9

Weight (kDa)

9.43

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	128 - 237	9.8e-28	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	270 - 351	8.5e-18	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1059
Acc36I	ACCTGC	1 cut(s)	1059
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccI	GTMKAC	3 cut(s)	345, 372, 897
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	217, 356
AclWI	GGATC	3 cut(s)	470, 483, 919
AcsI	RAATTY	2 cut(s)	620, 1016
AfaI	GTAC	4 cut(s)	401, 664, 866, 941
AfiI	CCNNNNNNNGG	2 cut(s)	154, 692
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	6 cut(s)	277, 299, 517, 532, 778, 925
AhdI	GACNNNNNGTC	1 cut(s)	904
AjiI	CACGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	4 cut(s)	339, 784, 904, 917
AluI	AGCT	4 cut(s)	339, 784, 904, 917
Alw21I	GWGCWC	2 cut(s)	230, 417
Alw44I	GTGCAC	1 cut(s)	413
AlwI	GGATC	3 cut(s)	470, 483, 919
AoxI	GGCC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	705, 781
ApoI	RAATTY	2 cut(s)	620, 1016
AseI	ATTAAT	1 cut(s)	1080
AspLEI	GCGC	2 cut(s)	139, 307
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	1 cut(s)	694
AsuHPI	GGTGA	1 cut(s)	475
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	2 cut(s)	112, 417
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BamHI	GGATCC	1 cut(s)	475
BbsI	GAAGAC	4 cut(s)	21, 532, 539, 1037
Bbv12I	GWGCWC	2 cut(s)	230, 417
BbvCI	CCTCAGC	1 cut(s)	785
BbvI	GCAGC	2 cut(s)	717, 793
BccI	CCATC	1 cut(s)	1040
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	404
BciVI	GTATCC	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	694
BfaI	CTAG	2 cut(s)	159, 1052
BfmI	CTRYAG	3 cut(s)	198, 703, 753
BfuAI	ACCTGC	1 cut(s)	1059
BfuI	GTATCC	1 cut(s)	1039
BisI	GCNGC	3 cut(s)	218, 706, 782
BlsI	GCNGC	3 cut(s)	219, 707, 783
Bme1390I	CCNGG	2 cut(s)	404, 694
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	904
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	404, 694
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	1000, 1013
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	4 cut(s)	21, 532, 539, 1037
BpmI	CTGGAG	2 cut(s)	786, 972
Bpu10I	CCTNAGC	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	694
BsaJI	CCNNGG	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 692
Bse1I	ACTGG	6 cut(s)	508, 556, 644, 664, 940, 989
Bse3DI	GCAATG	2 cut(s)	106, 519
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	1 cut(s)	624
BseLI	CCNNNNNNNGG	2 cut(s)	154, 692
BseMI	GCAATG	2 cut(s)	106, 519
BseMII	CTCAG	2 cut(s)	215, 776
BseNI	ACTGG	6 cut(s)	508, 556, 644, 664, 940, 989
BseSI	GKGCMC	2 cut(s)	112, 417
BseXI	GCAGC	2 cut(s)	717, 793
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	230, 417
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	154, 692
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	3 cut(s)	112, 230, 417
Bsp143I	GATC	4 cut(s)	439, 475, 651, 911
BspACI	CCGC	2 cut(s)	217, 356
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	216, 777
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	2 cut(s)	202, 707
BspMI	ACCTGC	1 cut(s)	1059
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	470, 483, 919
BsrDI	GCAATG	2 cut(s)	106, 519
BsrI	ACTGG	6 cut(s)	508, 556, 644, 664, 940, 989
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	4 cut(s)	439, 475, 651, 911
BssT1I	CCWWGG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	4 cut(s)	370, 384, 538, 576
BstAPI	GCANNNNNTGC	1 cut(s)	1010
BstC8I	GCNNGC	3 cut(s)	112, 160, 356
BstDEI	CTNAG	5 cut(s)	68, 224, 335, 340, 785
BstF5I	GGATG	1 cut(s)	624
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	139, 307
BstKTI	GATC	4 cut(s)	442, 478, 654, 914
BstMBI	GATC	4 cut(s)	439, 475, 651, 911
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 136, 1010
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	402, 692
BstSFI	CTRYAG	3 cut(s)	198, 703, 753
BstSLI	GKGCMC	2 cut(s)	112, 417
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	717, 793
BstV2I	GAAGAC	4 cut(s)	21, 532, 539, 1037
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	1039
BsuRI	GGCC	1 cut(s)	190
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	207, 657, 996
BveI	ACCTGC	1 cut(s)	1059
Cac8I	GCNNGC	3 cut(s)	112, 160, 356
CfoI	GCGC	2 cut(s)	139, 307
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	400, 663, 865, 940
CviAII	CATG	5 cut(s)	105, 252, 376, 491, 710
CviQI	GTAC	4 cut(s)	400, 663, 865, 940
DdeI	CTNAG	5 cut(s)	68, 224, 335, 340, 785
DpnI	GATC	4 cut(s)	441, 477, 653, 913
DpnII	GATC	4 cut(s)	439, 475, 651, 911
DriI	GACNNNNNGTC	1 cut(s)	904
Eam1105I	GACNNNNNGTC	1 cut(s)	904
Eco130I	CCWWGG	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	5 cut(s)	108, 255, 379, 494, 713
FalI	AAGNNNNNCTT	4 cut(s)	524, 556, 1029, 1061
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	5 cut(s)	104, 251, 375, 490, 709
FauI	CCCGC	1 cut(s)	363
FauNDI	CATATG	1 cut(s)	586
FblI	GTMKAC	3 cut(s)	345, 372, 897
Fnu4HI	GCNGC	3 cut(s)	218, 706, 782
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	218, 706, 782
FspBI	CTAG	2 cut(s)	159, 1052
GlaI	GCGC	2 cut(s)	138, 306
GluI	GCNGC	3 cut(s)	218, 706, 782
GsuI	CTGGAG	2 cut(s)	786, 972
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	693
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	139, 307
Hin1II	CATG	5 cut(s)	108, 255, 379, 494, 713
Hin6I	GCGC	2 cut(s)	137, 305
HinP1I	GCGC	2 cut(s)	137, 305
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	494, 678, 725
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	7 cut(s)	346, 373, 415, 606, 715, 898, 996
Hpy188I	TCNGA	5 cut(s)	38, 175, 444, 950, 1009
Hpy188III	TCNNGA	4 cut(s)	529, 579, 803, 909
Hpy8I	GTNNAC	7 cut(s)	346, 373, 415, 606, 715, 898, 996
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	535, 752, 881
HpyCH4III	ACNGT	4 cut(s)	370, 384, 538, 576
HpyCH4IV	ACGT	2 cut(s)	262, 460
HpyCH4V	TGCA	6 cut(s)	99, 104, 200, 415, 562, 705
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 136, 1010
HpyF3I	CTNAG	5 cut(s)	68, 224, 335, 340, 785
HpySE526I	ACGT	2 cut(s)	262, 460
Hsp92II	CATG	5 cut(s)	108, 255, 379, 494, 713
HspAI	GCGC	2 cut(s)	137, 305
Kzo9I	GATC	4 cut(s)	439, 475, 651, 911
Lsp1109I	GCAGC	2 cut(s)	717, 793
LweI	GCATC	2 cut(s)	1000, 1013
MaeI	CTAG	2 cut(s)	159, 1052
MaeII	ACGT	2 cut(s)	262, 460
MaeIII	GTNAC	1 cut(s)	931
MalI	GATC	4 cut(s)	441, 477, 653, 913
MboI	GATC	4 cut(s)	439, 475, 651, 911
MboII	GAAGA	8 cut(s)	26, 532, 544, 646, 748, 937, 982, 1037
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	112, 230, 417
MluCI	AATT	6 cut(s)	31, 435, 620, 847, 1016, 1077
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	639, 780, 847, 994
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	2 cut(s)	1064, 1080
MspA1I	CMGCKG	2 cut(s)	784, 917
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	2 cut(s)	404, 694
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	3 cut(s)	89, 136, 1010
NciI	CCSGG	1 cut(s)	694
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	4 cut(s)	439, 475, 651, 911
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	5 cut(s)	108, 255, 379, 494, 713
NlaIV	GGNNCC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	1059
PfeI	GAWTC	2 cut(s)	678, 725
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	219, 707, 783
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	1080
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	581
PstI	CTGCAG	2 cut(s)	202, 707
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	2 cut(s)	784, 917
RsaI	GTAC	4 cut(s)	401, 664, 866, 941
RsaNI	GTAC	4 cut(s)	400, 663, 865, 940
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	1064, 1080
SatI	GCNGC	3 cut(s)	218, 706, 782
Sau3AI	GATC	4 cut(s)	439, 475, 651, 911
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	404, 694
SduI	GDGCHC	3 cut(s)	112, 230, 417
SfaNI	GCATC	2 cut(s)	1000, 1013
SfcI	CTRYAG	3 cut(s)	198, 703, 753
SinI	GGWCC	1 cut(s)	581
Sse9I	AATT	6 cut(s)	31, 435, 620, 847, 1016, 1077
SsiI	CCGC	2 cut(s)	217, 356
SspMI	CTAG	2 cut(s)	159, 1052
StyD4I	CCNGG	2 cut(s)	402, 692
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	4 cut(s)	370, 384, 538, 576
TaiI	ACGT	2 cut(s)	265, 463
TaqI	TCGA	4 cut(s)	239, 372, 390, 959
TasI	AATT	6 cut(s)	31, 435, 620, 847, 1016, 1077
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	678, 725
Tru1I	TTAA	2 cut(s)	1064, 1080
Tru9I	TTAA	2 cut(s)	1064, 1080
TscAI	CASTG	3 cut(s)	207, 664, 996
TseI	GCWGC	2 cut(s)	705, 781
TspDTI	ATGAA	7 cut(s)	27, 57, 67, 471, 603, 613, 632
TspRI	CASTG	3 cut(s)	207, 664, 996
Van91I	CCANNNNNTGG	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	581
VspI	ATTAAT	1 cut(s)	1080
XapI	RAATTY	2 cut(s)	620, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60
XmiI	GTMKAC	3 cut(s)	345, 372, 897
XspI	CTAG	2 cut(s)	159, 1052
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.