Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

2059362 .. 2060338

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATCAGCACAAAACTTTCAGACCAAATCTTCTGGCCATTAATCCCCGCCGCGTGTGTCAGTTTCCGGCGGCCGATAACCACTAAGTCCAAACTACTGCCCTACTCACGCCCTAAATCTTTGAAACTCAGACACTTAGCCCAAAACTCCAAATGGGCTGTTAGGCTAAGCTTAGTGGACCAAAGCCCGCCAAAATCGACGTTTGACGTGGAACGGTTAGTAGAGTTTTTGTACGAGGATCTAGTTCATCTTTTTGATGATCAGGGAATTGATCGGACGGCGTGTGATGAGCGTGTGAAGTTCAGGTACCCAATCACCAAGCATGAGACTGTAACTGGGTACTTGTTGAACATAGCCTTCTTGAAGATTGTCTTCATGCCTAAGTTTCAGTTGCACTGGGTCAAACAGACAGGACCATATGAAATCACTAGAAGGTGGACTATGGTTATGAAGTTCATCCCTCTACCCTGGAAACCAGAACTGATCTTTAGAGGAACCTCTGTCATGGGCATCAACCCCGAGACCGGGAAGTTCTGCAGCCATGTGGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

185

Amino Acids

21.59

Weight (kDa)

9.68

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	48, 51, 70, 188
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	35, 71
AfaI	GTAC	3 cut(s)	233, 308, 341
AfiI	CCNNNNNNNGG	2 cut(s)	524, 525
AgsI	TTSAA	3 cut(s)	124, 349, 364
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	320, 515
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	518
AoxI	GGCC	2 cut(s)	35, 71
ApeKI	GCWGC	1 cut(s)	537
AseI	ATTAAT	1 cut(s)	41
Asp718I	GGTACC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	178, 413
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	178, 413
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	549
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	2 cut(s)	3, 259
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	320, 515
BfaI	CTAG	2 cut(s)	242, 429
BfmI	CTRYAG	1 cut(s)	535
BisI	GCNGC	3 cut(s)	51, 71, 538
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	3 cut(s)	52, 72, 539
Bme1390I	CCNGG	2 cut(s)	469, 526
Bme18I	GGWCC	2 cut(s)	178, 413
BmeT110I	CYCGRG	1 cut(s)	518
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	178, 413
BmiI	GGNNCC	2 cut(s)	308, 496
BmrFI	CCNGG	2 cut(s)	469, 526
BmrI	ACTGGG	2 cut(s)	345, 406
BmsI	GCATC	1 cut(s)	519
BmuI	ACTGGG	2 cut(s)	345, 406
BpiI	GAAGAC	1 cut(s)	364
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	467
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 525
Bse1I	ACTGG	2 cut(s)	340, 401
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	524, 525
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	340, 401
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	549
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	37, 73
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	67, 525
BslI	CCNNNNNNNGG	2 cut(s)	524, 525
BsmAI	GTCTC	2 cut(s)	320, 515
BsnI	GGCC	2 cut(s)	37, 73
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	518
Bsp143I	GATC	5 cut(s)	3, 238, 259, 271, 483
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	4 cut(s)	48, 51, 70, 188
BspANI	GGCC	2 cut(s)	37, 73
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	308, 496
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	340, 401
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	5 cut(s)	3, 238, 259, 271, 483
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	216, 331
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	6 cut(s)	84, 128, 136, 167, 172, 381
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	5 cut(s)	6, 241, 262, 274, 486
BstMAI	GTCTC	2 cut(s)	320, 515
BstMBI	GATC	5 cut(s)	3, 238, 259, 271, 483
BstMCI	CGRYCG	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	467, 524
BstSFI	CTRYAG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	37, 73
BtrI	CACGTC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	178, 413
Csp6I	GTAC	3 cut(s)	232, 307, 340
CviAII	CATG	4 cut(s)	323, 376, 505, 542
CviJI	RGCY	9 cut(s)	37, 73, 140, 158, 166, 171, 186, 356, 540
CviKI_1	RGCY	9 cut(s)	37, 73, 140, 158, 166, 171, 186, 356, 540
CviQI	GTAC	3 cut(s)	232, 307, 340
DdeI	CTNAG	6 cut(s)	84, 128, 136, 167, 172, 381
DpnI	GATC	5 cut(s)	5, 240, 261, 273, 485
DpnII	GATC	5 cut(s)	3, 238, 259, 271, 483
EaeI	YGGCCR	2 cut(s)	35, 71
EagI	CGGCCG	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	178, 413
Eco52I	CGGCCG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	326, 379, 508, 545
FaiI	YATR	9 cut(s)	324, 353, 377, 418, 420, 443, 449, 506, 543
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	4 cut(s)	322, 375, 504, 541
FauI	CCCGC	2 cut(s)	55, 195
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	3, 259
Fnu4HI	GCNGC	3 cut(s)	51, 71, 538
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	51, 71, 538
FspBI	CTAG	2 cut(s)	242, 429
GluI	GCNGC	3 cut(s)	51, 71, 538
HaeIII	GGCC	2 cut(s)	37, 73
HapII	CCGG	2 cut(s)	67, 525
Hin1II	CATG	4 cut(s)	326, 379, 508, 545
HindIII	AAGCTT	1 cut(s)	169
HpaII	CCGG	2 cut(s)	67, 525
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	178, 438, 547
Hpy188I	TCNGA	4 cut(s)	22, 131, 276, 554
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	3 cut(s)	178, 438, 547
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	367, 426
HpyCH4III	ACNGT	2 cut(s)	216, 331
HpyCH4IV	ACGT	2 cut(s)	200, 207
HpyCH4V	TGCA	2 cut(s)	394, 537
HpyF3I	CTNAG	6 cut(s)	84, 128, 136, 167, 172, 381
HpySE526I	ACGT	2 cut(s)	200, 207
Hsp92II	CATG	4 cut(s)	326, 379, 508, 545
KpnI	GGTACC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	3, 259
Kzo9I	GATC	5 cut(s)	3, 238, 259, 271, 483
Lsp1109I	GCAGC	1 cut(s)	549
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	242, 429
MaeII	ACGT	2 cut(s)	200, 207
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	5, 240, 261, 273, 485
MboI	GATC	5 cut(s)	3, 238, 259, 271, 483
MboII	GAAGA	3 cut(s)	22, 364, 376
MflI	RGATCY	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	1 cut(s)	267
MluNI	TGGCCA	1 cut(s)	37
MnlI	CCTC	4 cut(s)	229, 471, 485, 508
Mox20I	TGGCCA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	37
MspI	CCGG	2 cut(s)	67, 525
MspR9I	CCNGG	2 cut(s)	469, 526
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	53
NciI	CCSGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	5 cut(s)	3, 238, 259, 271, 483
NlaIII	CATG	4 cut(s)	326, 379, 508, 545
NlaIV	GGNNCC	2 cut(s)	308, 496
PkrI	GCNGC	3 cut(s)	52, 72, 539
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	308, 496
PspPI	GGNCC	2 cut(s)	178, 413
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	233, 308, 341
RsaNI	GTAC	3 cut(s)	232, 307, 340
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	3 cut(s)	51, 71, 538
Sau3AI	GATC	5 cut(s)	3, 238, 259, 271, 483
Sau96I	GGNCC	2 cut(s)	178, 413
ScrFI	CCNGG	2 cut(s)	469, 526
SetI	ASST	6 cut(s)	173, 203, 210, 308, 437, 500
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	535
SinI	GGWCC	2 cut(s)	178, 413
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	4 cut(s)	48, 51, 70, 188
SspMI	CTAG	2 cut(s)	242, 429
StyD4I	CCNGG	2 cut(s)	467, 524
TaaI	ACNGT	2 cut(s)	216, 331
TaiI	ACGT	2 cut(s)	203, 210
TaqI	TCGA	1 cut(s)	197
TasI	AATT	1 cut(s)	267
TauI	GCSGC	2 cut(s)	53, 73
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	1 cut(s)	537
TspDTI	ATGAA	5 cut(s)	236, 364, 435, 445, 464
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	178, 413
VspI	ATTAAT	1 cut(s)	41
XspI	CTAG	2 cut(s)	242, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.