Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

3213477 .. 3217224

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG045200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTAGCACACAACTTTCCGACCAAGTTTTCAGGCCAATCCCTGCCGTGTGCGTCAGTTTGCGGCGACTGAGCACCACCAAACCGAATAAACTACCATGCCACCCACGTCCCAAAGCCTTGAAACACAGACACTTGGGGATTCAAACAGCGCAGAACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTAGACCAAAGCCCGCCAAAATCAACCTTCGACATGGAACGGTTAGTCGATTTTCTGTACCAGGATTTAGTGCACTTGTTTGATGATCAAGGAATTGATCGGACGGCGTATGATGAACGTGTGAAGTTCAGGGATCCAATCACCAAGCATGACTCTATAACTGGCTACTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCATTGGGTCAAACAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAATTCATCCCTCTGCCTTGGAAACCAGAATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCTGAAACCGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATAAGGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGAGATACTAAAGAGAACAGCAAATTATGAGGTAAGAAAGTACTCCCCTTTTATAGTGGTAGAAGGAAGTGTAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTCGGAAAGAACTCGAAAATGGAGAAGATACCAATGACAACTCCAGTGTTCACAGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTAGACAAGGATTTAAGCAGGTGGAGAATTAATAGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

312

Amino Acids

36.06

Weight (kDa)

9.32

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	77 - 186	1.8e-28	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	219 - 300	6.9e-18	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	906
Acc36I	ACCTGC	1 cut(s)	906
AccI	GTMKAC	2 cut(s)	192, 744
AciI	CCGC	2 cut(s)	64, 203
AclWI	GGATC	3 cut(s)	317, 330, 766
AcsI	RAATTY	2 cut(s)	467, 863
AfaI	GTAC	4 cut(s)	248, 511, 713, 788
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	6 cut(s)	124, 146, 364, 379, 625, 772
AhdI	GACNNNNNGTC	1 cut(s)	751
AjiI	CACGTC	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	186, 631, 751, 764
AluI	AGCT	4 cut(s)	186, 631, 751, 764
Alw21I	GWGCWC	2 cut(s)	77, 264
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	3 cut(s)	317, 330, 766
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	552, 628
ApoI	RAATTY	2 cut(s)	467, 863
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BamHI	GGATCC	1 cut(s)	322
BbsI	GAAGAC	3 cut(s)	379, 386, 884
Bbv12I	GWGCWC	2 cut(s)	77, 264
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	564, 640
BccI	CCATC	1 cut(s)	887
BceAI	ACGGC	2 cut(s)	32, 309
BciT130I	CCWGG	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	541
BfaI	CTAG	2 cut(s)	6, 899
BfmI	CTRYAG	2 cut(s)	550, 600
BfuAI	ACCTGC	1 cut(s)	906
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	3 cut(s)	65, 553, 629
BlsI	GCNGC	3 cut(s)	66, 554, 630
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	2 cut(s)	251, 541
Bme18I	GGWCC	1 cut(s)	428
BmeRI	GACNNNNNGTC	1 cut(s)	751
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	251, 541
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	847, 860
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	3 cut(s)	379, 386, 884
BpmI	CTGGAG	2 cut(s)	633, 819
Bpu10I	CCTNAGC	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	5 cut(s)	355, 403, 511, 787, 836
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	62, 623
BseNI	ACTGG	5 cut(s)	355, 403, 511, 787, 836
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	564, 640
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	77, 264
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	77, 264
Bsp143I	GATC	5 cut(s)	274, 286, 322, 498, 758
BspACI	CCGC	2 cut(s)	64, 203
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	2 cut(s)	63, 624
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	554
BspMI	ACCTGC	1 cut(s)	906
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	317, 330, 766
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	5 cut(s)	355, 403, 511, 787, 836
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	5 cut(s)	274, 286, 322, 498, 758
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	231, 385, 423
BstAPI	GCANNNNNTGC	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	7, 203
BstDEI	CTNAG	4 cut(s)	71, 182, 187, 632
BstF5I	GGATG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	277, 289, 325, 501, 761
BstMBI	GATC	5 cut(s)	274, 286, 322, 498, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	249, 539
BstSFI	CTRYAG	2 cut(s)	550, 600
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	564, 640
BstV2I	GAAGAC	3 cut(s)	379, 386, 884
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	504, 843
BveI	ACCTGC	1 cut(s)	906
Cac8I	GCNNGC	2 cut(s)	7, 203
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	247, 510, 712, 787
CviAII	CATG	4 cut(s)	99, 223, 338, 557
CviQI	GTAC	4 cut(s)	247, 510, 712, 787
DdeI	CTNAG	4 cut(s)	71, 182, 187, 632
DpnI	GATC	5 cut(s)	276, 288, 324, 500, 760
DpnII	GATC	5 cut(s)	274, 286, 322, 498, 758
DriI	GACNNNNNGTC	1 cut(s)	751
Eam1105I	GACNNNNNGTC	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	4 cut(s)	102, 226, 341, 560
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 876, 908
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	4 cut(s)	98, 222, 337, 556
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	192, 744
Fnu4HI	GCNGC	3 cut(s)	65, 553, 629
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	65, 553, 629
FspBI	CTAG	2 cut(s)	6, 899
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	65, 553, 629
GsuI	CTGGAG	2 cut(s)	633, 819
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	540
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	4 cut(s)	102, 226, 341, 560
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	142, 341, 525, 572
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	6 cut(s)	193, 262, 453, 562, 745, 843
Hpy188I	TCNGA	4 cut(s)	22, 291, 797, 856
Hpy188III	TCNNGA	4 cut(s)	376, 426, 650, 756
Hpy8I	GTNNAC	6 cut(s)	193, 262, 453, 562, 745, 843
HpyAV	CCTTC	4 cut(s)	226, 382, 599, 728
HpyCH4III	ACNGT	3 cut(s)	231, 385, 423
HpyCH4IV	ACGT	2 cut(s)	109, 307
HpyCH4V	TGCA	3 cut(s)	262, 409, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	4 cut(s)	71, 182, 187, 632
HpySE526I	ACGT	2 cut(s)	109, 307
Hsp92II	CATG	4 cut(s)	102, 226, 341, 560
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	274, 286, 322, 498, 758
Lsp1109I	GCAGC	2 cut(s)	564, 640
LweI	GCATC	2 cut(s)	847, 860
MaeI	CTAG	2 cut(s)	6, 899
MaeII	ACGT	2 cut(s)	109, 307
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	5 cut(s)	276, 288, 324, 500, 760
MboI	GATC	5 cut(s)	274, 286, 322, 498, 758
MboII	GAAGA	7 cut(s)	379, 391, 493, 595, 784, 829, 884
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	77, 264
MluCI	AATT	6 cut(s)	282, 467, 494, 694, 863, 924
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	486, 627, 694, 841
MseI	TTAA	2 cut(s)	911, 927
MspA1I	CMGCKG	2 cut(s)	631, 764
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	251, 541
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	857
NciI	CCSGG	1 cut(s)	541
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	5 cut(s)	274, 286, 322, 498, 758
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	102, 226, 341, 560
NlaIV	GGNNCC	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	142, 525, 572
PkrI	GCNGC	3 cut(s)	66, 554, 630
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	2 cut(s)	631, 764
RsaI	GTAC	4 cut(s)	248, 511, 713, 788
RsaNI	GTAC	4 cut(s)	247, 510, 712, 787
SaqAI	TTAA	2 cut(s)	911, 927
SatI	GCNGC	3 cut(s)	65, 553, 629
Sau3AI	GATC	5 cut(s)	274, 286, 322, 498, 758
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	251, 541
SduI	GDGCHC	2 cut(s)	77, 264
SfaNI	GCATC	2 cut(s)	847, 860
SfcI	CTRYAG	2 cut(s)	550, 600
SinI	GGWCC	1 cut(s)	428
Sse9I	AATT	6 cut(s)	282, 467, 494, 694, 863, 924
SsiI	CCGC	2 cut(s)	64, 203
SspMI	CTAG	2 cut(s)	6, 899
StyD4I	CCNGG	2 cut(s)	249, 539
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	3 cut(s)	231, 385, 423
TaiI	ACGT	2 cut(s)	112, 310
TaqI	TCGA	3 cut(s)	219, 237, 806
TasI	AATT	6 cut(s)	282, 467, 494, 694, 863, 924
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	3 cut(s)	142, 525, 572
Tru1I	TTAA	2 cut(s)	911, 927
Tru9I	TTAA	2 cut(s)	911, 927
TscAI	CASTG	2 cut(s)	511, 843
TseI	GCWGC	2 cut(s)	552, 628
TspDTI	ATGAA	4 cut(s)	318, 450, 460, 479
TspRI	CASTG	2 cut(s)	511, 843
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	467, 863
XmiI	GTMKAC	2 cut(s)	192, 744
XspI	CTAG	2 cut(s)	6, 899
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.