Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008099

Physical Location & Seq

Genomic Coordinates Reverse (-)

3741014 .. 3744744

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTAGCACACAAGTTTTCAGGCCAATCCCTGCGGTGTGCGTCAGTTTGCGGCGACTGAGCACCACCAAACCGAATAAACTACCATGCCACCCACGTCCCAAAGCCTTGAAACACAAACACTTGGGGATTCAAACAGCGCAGAACTACTCAAAGTGGGCTGTTAGACTTAGCTTAGTAGACCAAAGCCCGCCAAAATCAACCGTCGACATGGAACGGTTAGTCGATTTTCTGTACCAGGATTTAGTGCACTTGTTTGATGATCAAGGAATTGATCGGACGGCATATGATGAACTTGTGAAGTTCAGGGATCCAATCACCAAGCATGACTCTATAACTGGCTACTTGTTGAACATTGCCTTCTTGAAGACAGTCTTCACTCCCAAGTTCCAGTTGCATTGGGTCAAGCAGTCAGGACCATATGAAATCACTACAAGGTGGACTATGGTTATGAAATTCATCCCTCTGCCTTGGAAACCAGAATTGATCTTCACTGGTACTTCTGTTATGGGAATCAACCCTGAAACCGGGAAGTTCTGCAGCCATGTGGACTTCTGGGATTCCATAAGGAAGAATGACTATTTTTCTGTAGAAGGTTTGTTAGATGTATTCAAGCAGCTGAGGATTTACAAAACTCCAGACTTGGAAACACCAAAATATGAGATACTAAAGAGAACAGCAAATTATGAGGTAAGAAAGTACTCCCCTTTTATAGTGGTAGAAGGAAGTGTAGACAAGCTGTCTGGATCAGCTGGTTTCAATGATGTTACTGGGTACATCTTCGGAAAGAACTCGAAAATGGAGAAGATACCAATGACAACTCCAGTGTTCACAGAGGCATCTGATGCTGAATTTTCCAAAGTATCCATCAAAGTATGTCTTCCACTAGACAAGGATTTAAGCAGGTGGAGAATTAATAGATGTTCGATATATATTGTACTTACATTGTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2358 SOUL

Protein Analysis

318

Amino Acids

36.62

Weight (kDa)

9.3

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2358	PF10184	73 - 182	1.1e-27	Uncharacterized conserved protein (DUF2358)
SOUL	PF04832	215 - 296	6.8e-18	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20140 AT5G20140
fragaria_vesca	FvH4_1g04030 FvH4_1g04030 FvH4_1g04030
malus_domestica	MD00G1026900.v1.1 MD15G1178700.v1.1
prunus_persica	Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1 Prupe.7G236600_v2.0.a1
pyrus_communis	pycom02g03170 pycom15g16060
rosa_chinensis	RchiOBHm_Chr2g0089501
rosa_laevigata	RLG00000016036
rosa_multiflora	Rmu_sc0006193.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151870
rosa_rugosa	Rorug02G0001200 Rorug02G0001200 Rorug02G0001300
rosa_samantha	Rh2BG045200 Rh2CG047000 Rh2DG046600
rosa_wichuraiana	Rw2G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	894
AccI	GTMKAC	3 cut(s)	180, 207, 732
AciI	CCGC	3 cut(s)	35, 52, 191
AclWI	GGATC	3 cut(s)	305, 318, 754
AcsI	RAATTY	2 cut(s)	455, 851
AfaI	GTAC	5 cut(s)	236, 499, 701, 776, 939
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	6 cut(s)	112, 134, 352, 367, 613, 760
AhdI	GACNNNNNGTC	1 cut(s)	739
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	4 cut(s)	174, 619, 739, 752
AluI	AGCT	4 cut(s)	174, 619, 739, 752
Alw21I	GWGCWC	2 cut(s)	65, 252
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	3 cut(s)	305, 318, 754
AoxI	GGCC	1 cut(s)	23
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	540, 616
ApoI	RAATTY	2 cut(s)	455, 851
AseI	ATTAAT	1 cut(s)	915
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	310
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	252
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BamHI	GGATCC	1 cut(s)	310
BbsI	GAAGAC	3 cut(s)	367, 374, 872
Bbv12I	GWGCWC	2 cut(s)	65, 252
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	552, 628
BccI	CCATC	1 cut(s)	875
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	529
BfaI	CTAG	2 cut(s)	6, 887
BfmI	CTRYAG	2 cut(s)	538, 588
BfuAI	ACCTGC	1 cut(s)	894
BfuI	GTATCC	1 cut(s)	874
BisI	GCNGC	3 cut(s)	53, 541, 617
BlsI	GCNGC	3 cut(s)	54, 542, 618
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	2 cut(s)	239, 529
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	739
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	239, 529
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	835, 848
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	3 cut(s)	367, 374, 872
BpmI	CTGGAG	2 cut(s)	621, 807
Bpu10I	CCTNAGC	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	5 cut(s)	343, 391, 499, 775, 824
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	50, 611
BseNI	ACTGG	5 cut(s)	343, 391, 499, 775, 824
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	552, 628
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	65, 252
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	65, 252
Bsp143I	GATC	5 cut(s)	262, 274, 310, 486, 746
BspACI	CCGC	3 cut(s)	35, 52, 191
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	51, 612
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	542
BspMI	ACCTGC	1 cut(s)	894
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	305, 318, 754
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	5 cut(s)	343, 391, 499, 775, 824
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	5 cut(s)	262, 274, 310, 486, 746
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	205, 219, 373
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	2 cut(s)	7, 191
BstDEI	CTNAG	4 cut(s)	59, 170, 175, 620
BstF5I	GGATG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	5 cut(s)	265, 277, 313, 489, 749
BstMBI	GATC	5 cut(s)	262, 274, 310, 486, 746
BstMWI	GCNNNNNNNGC	1 cut(s)	845
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	237, 527
BstSFI	CTRYAG	2 cut(s)	538, 588
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	552, 628
BstV2I	GAAGAC	3 cut(s)	367, 374, 872
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	492, 831
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	2 cut(s)	7, 191
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	5 cut(s)	235, 498, 700, 775, 938
CviAII	CATG	5 cut(s)	87, 211, 326, 545, 952
CviQI	GTAC	5 cut(s)	235, 498, 700, 775, 938
DdeI	CTNAG	4 cut(s)	59, 170, 175, 620
DpnI	GATC	5 cut(s)	264, 276, 312, 488, 748
DpnII	GATC	5 cut(s)	262, 274, 310, 486, 746
DriI	GACNNNNNGTC	1 cut(s)	739
Eam1105I	GACNNNNNGTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	5 cut(s)	90, 214, 329, 548, 955
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 864, 896
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	5 cut(s)	86, 210, 325, 544, 951
FauI	CCCGC	1 cut(s)	198
FauNDI	CATATG	2 cut(s)	286, 421
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	3 cut(s)	180, 207, 732
Fnu4HI	GCNGC	3 cut(s)	53, 541, 617
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	3 cut(s)	53, 541, 617
FspBI	CTAG	2 cut(s)	6, 887
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	53, 541, 617
GsuI	CTGGAG	2 cut(s)	621, 807
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	5 cut(s)	90, 214, 329, 548, 955
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	4 cut(s)	130, 329, 513, 560
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	7 cut(s)	181, 208, 250, 441, 550, 733, 831
Hpy188I	TCNGA	3 cut(s)	279, 785, 844
Hpy188III	TCNNGA	4 cut(s)	364, 414, 638, 744
Hpy8I	GTNNAC	7 cut(s)	181, 208, 250, 441, 550, 733, 831
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	370, 587, 716
HpyCH4III	ACNGT	3 cut(s)	205, 219, 373
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	250, 397, 540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	845
HpyF3I	CTNAG	4 cut(s)	59, 170, 175, 620
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	5 cut(s)	90, 214, 329, 548, 955
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	262, 274, 310, 486, 746
Lsp1109I	GCAGC	2 cut(s)	552, 628
LweI	GCATC	2 cut(s)	835, 848
MaeI	CTAG	2 cut(s)	6, 887
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	5 cut(s)	264, 276, 312, 488, 748
MboI	GATC	5 cut(s)	262, 274, 310, 486, 746
MboII	GAAGA	7 cut(s)	367, 379, 481, 583, 772, 817, 872
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	65, 252
MluCI	AATT	6 cut(s)	270, 455, 482, 682, 851, 912
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	4 cut(s)	474, 615, 682, 829
MseI	TTAA	2 cut(s)	899, 915
MspA1I	CMGCKG	2 cut(s)	619, 752
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	239, 529
MvaI	CCWGG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	845
NciI	CCSGG	1 cut(s)	529
NdeI	CATATG	2 cut(s)	286, 421
NdeII	GATC	5 cut(s)	262, 274, 310, 486, 746
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	90, 214, 329, 548, 955
NlaIV	GGNNCC	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	894
PfeI	GAWTC	3 cut(s)	130, 513, 560
PkrI	GCNGC	3 cut(s)	54, 542, 618
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	2 cut(s)	619, 752
RsaI	GTAC	5 cut(s)	236, 499, 701, 776, 939
RsaNI	GTAC	5 cut(s)	235, 498, 700, 775, 938
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	899, 915
SatI	GCNGC	3 cut(s)	53, 541, 617
Sau3AI	GATC	5 cut(s)	262, 274, 310, 486, 746
Sau96I	GGNCC	1 cut(s)	416
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	239, 529
SduI	GDGCHC	2 cut(s)	65, 252
SetI	ASST	9 cut(s)	100, 176, 440, 598, 621, 693, 741, 754, 908
SfaNI	GCATC	2 cut(s)	835, 848
SfcI	CTRYAG	2 cut(s)	538, 588
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	6 cut(s)	270, 455, 482, 682, 851, 912
SsiI	CCGC	3 cut(s)	35, 52, 191
SspMI	CTAG	2 cut(s)	6, 887
StyD4I	CCNGG	2 cut(s)	237, 527
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	3 cut(s)	205, 219, 373
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	4 cut(s)	207, 225, 794, 926
TasI	AATT	6 cut(s)	270, 455, 482, 682, 851, 912
TatI	WGTACW	2 cut(s)	699, 937
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	130, 513, 560
Tru1I	TTAA	2 cut(s)	899, 915
Tru9I	TTAA	2 cut(s)	899, 915
TscAI	CASTG	2 cut(s)	499, 831
TseI	GCWGC	2 cut(s)	540, 616
TspDTI	ATGAA	4 cut(s)	306, 438, 448, 467
TspRI	CASTG	2 cut(s)	499, 831
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	2 cut(s)	455, 851
XmiI	GTMKAC	3 cut(s)	180, 207, 732
XspI	CTAG	2 cut(s)	6, 887
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.