Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012998

Physical Location & Seq

Genomic Coordinates Forward (+)

6802282 .. 6803655

Gene Structure 1374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGTTTGGTAAGAGTCTCAGCAATCAGATCGAGCAAACTCTTCCTGAATGGCAAGACAAGTTCTTGTCTTACAAAGAACTCAAAAAACGACTCAAACTCATCGGTTCCAAAACCGCCGATCGTCCCGTTAAACGACTCCGTTTAGATGAGTTTTCCGTCGGAATATCGAAAGAAGAGATCAATTTCATCCAATTGTTAGAAGACGAGTTGGAGAAATTCAACAATTTCTTCGTTGAGAAGGAAGAAGAATATATCATCAGACTAAAGGAATTTAGAGATAGAATTGCGAAAGCTAAGGATTCAATGGAGAAGATGATAAAAATCAGGAAGGAGATTGTTGATTTCCATGGAGAAATGGTTCTTCTTGAGAATTACAGTGCTCTTAATTACACTGGATTGGTTAAGATACTGAAGAAGTATGACAAAAGAACTGGTGATCTCATGCGTTTACCTTTCATCCAGAAAGTTCTTCAGCAACCTTTTTACACTACTGACTTATTGTTCAAGCTTGTCAAGGAATCTGAGGCAATGCTTGATCAGATCTTCCCTGCTAACGAAACTGAGTCTGAGATTATCCAAGCAGAGTTATCAGAGCATAAGTTCATGGAGAGTCTTCATATGAAGAGCACAATCGCTGCCTTGCGGGTTTTGAAGGAGATCAGGAGTGGAAGTTCTACTGTTAGTGTGTTTTCATTGCCGCCTCTACAGTTAAATGGCTTAGATGAGACATGGAAGAAGATTCCATTGTTGGAGCAAGAAGCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

256

Amino Acids

30.07

Weight (kDa)

7.76

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 37	3.3e-09	SPX domain
SPX	PF03105	105 - 157	2.2e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20150
fragaria_vesca	FvH4_1g03200 FvH4_1g03200
malus_domestica	MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica	Prupe.7G243500_v2.0.a1
pyrus_communis	pycom02g02600 pycom15g15440
rosa_chinensis	RchiOBHm_Chr2g0088351
rosa_laevigata	RLG00000015944
rosa_multiflora	Rmu_sc0004235.1_g000027
rosa_roxburghii	Rroxscaffold_2G00152740
rosa_rugosa	Rorug01G0483000
rosa_samantha	Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana	Rw2G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	117, 646, 701
AcsI	RAATTY	2 cut(s)	218, 272
AcuI	CTGAAG	2 cut(s)	434, 458
AgsI	TTSAA	4 cut(s)	223, 306, 508, 655
AloI	GAACNNNNNNTCC	4 cut(s)	345, 377, 658, 690
AluBI	AGCT	2 cut(s)	296, 511
AluI	AGCT	2 cut(s)	296, 511
Alw21I	GWGCWC	2 cut(s)	385, 632
Alw26I	GTCTC	2 cut(s)	23, 722
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	218, 272
Asp700I	GAANNNNTTC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	210, 608
Bbv12I	GWGCWC	2 cut(s)	385, 632
BbvI	GCAGC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	23, 722
BfmI	CTRYAG	1 cut(s)	707
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	2 cut(s)	639, 701
BlsI	GCNGC	2 cut(s)	640, 702
BmiI	GGNNCC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	210, 608
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 658, 688
Bse1I	ACTGG	2 cut(s)	400, 439
Bse3DI	GCAATG	2 cut(s)	537, 695
Bse8I	GATNNNNATC	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	189, 459
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	537, 695
BseMII	CTCAG	4 cut(s)	34, 516, 555, 561
BseNI	ACTGG	2 cut(s)	400, 439
BseXI	GCAGC	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	385, 632
BslFI	GGGAC	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	23, 722
BsmFI	GGGAC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	385, 632
Bsp143I	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	3 cut(s)	117, 646, 701
BspCNI	CTCAG	4 cut(s)	33, 517, 556, 562
BspLI	GGNNCC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	620
BsrDI	GCAATG	2 cut(s)	537, 695
BsrI	ACTGG	2 cut(s)	400, 439
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
BssT1I	CCWWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	380, 682, 711
Bst6I	CTCTTC	3 cut(s)	48, 171, 620
BstDEI	CTNAG	6 cut(s)	20, 297, 525, 564, 570, 721
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	189, 459
BstKTI	GATC	7 cut(s)	33, 124, 183, 442, 541, 546, 663
BstMAI	GTCTC	2 cut(s)	23, 722
BstMBI	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
BstMCI	CGRYCG	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	2 cut(s)	210, 608
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	189, 459
BtsIMutI	CAGTG	2 cut(s)	385, 393
CviAII	CATG	4 cut(s)	350, 445, 607, 732
CviJI	RGCY	4 cut(s)	296, 511, 720, 764
CviKI_1	RGCY	4 cut(s)	296, 511, 720, 764
DdeI	CTNAG	6 cut(s)	20, 297, 525, 564, 570, 721
DpnI	GATC	7 cut(s)	32, 123, 182, 441, 540, 545, 662
DpnII	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
Eam1104I	CTCTTC	3 cut(s)	48, 171, 620
EarI	CTCTTC	3 cut(s)	48, 171, 620
Eco130I	CCWWGG	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	434, 458
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	353, 448, 610, 735
FaiI	YATR	9 cut(s)	255, 351, 423, 446, 600, 608, 621, 623, 733
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	4 cut(s)	349, 444, 606, 731
FauI	CCCGC	1 cut(s)	639
FauNDI	CATATG	1 cut(s)	621
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	639, 701
FokI	GGATG	2 cut(s)	176, 446
Fsp4HI	GCNGC	2 cut(s)	639, 701
GluI	GCNGC	2 cut(s)	639, 701
Hin1II	CATG	4 cut(s)	353, 448, 610, 735
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	8 cut(s)	16, 93, 138, 302, 521, 566, 613, 742
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	7 cut(s)	30, 164, 263, 526, 543, 571, 595
Hpy188III	TCNNGA	5 cut(s)	47, 328, 368, 463, 664
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	235, 325, 649
HpyCH4III	ACNGT	3 cut(s)	380, 682, 711
HpyF3I	CTNAG	6 cut(s)	20, 297, 525, 564, 570, 721
Hsp92II	CATG	4 cut(s)	353, 448, 610, 735
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	1 cut(s)	754
LpnPI	CCDG	7 cut(s)	60, 313, 381, 420, 476, 564, 649
Lsp1109I	GCAGC	1 cut(s)	625
MalI	GATC	7 cut(s)	32, 123, 182, 441, 540, 545, 662
MboI	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	2 cut(s)	385, 632
MluCI	AATT	8 cut(s)	184, 194, 218, 226, 272, 285, 373, 388
MlyI	GAGTC	5 cut(s)	25, 87, 132, 575, 622
MmeI	TCCRAC	3 cut(s)	142, 192, 732
MnlI	CCTC	2 cut(s)	520, 714
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	4 cut(s)	132, 387, 405, 713
MunI	CAATTG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
NlaIII	CATG	4 cut(s)	353, 448, 610, 735
NlaIV	GGNNCC	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	302, 521, 742
PkrI	GCNGC	2 cut(s)	640, 702
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	5 cut(s)	24, 87, 132, 574, 621
PpsI	GAGTC	5 cut(s)	24, 87, 132, 574, 621
PspN4I	GGNNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	543
PvuI	CGATCG	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	4 cut(s)	132, 387, 405, 713
SatI	GCNGC	2 cut(s)	639, 701
Sau3AI	GATC	7 cut(s)	30, 121, 180, 439, 538, 543, 660
SchI	GAGTC	5 cut(s)	25, 87, 132, 575, 622
SduI	GDGCHC	2 cut(s)	385, 632
SetI	ASST	4 cut(s)	298, 457, 484, 513
SfcI	CTRYAG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	8 cut(s)	184, 194, 218, 226, 272, 285, 373, 388
SsiI	CCGC	3 cut(s)	117, 646, 701
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	380, 682, 711
TaqI	TCGA	2 cut(s)	33, 170
TasI	AATT	8 cut(s)	184, 194, 218, 226, 272, 285, 373, 388
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	3 cut(s)	302, 521, 742
Tru1I	TTAA	4 cut(s)	132, 387, 405, 713
Tru9I	TTAA	4 cut(s)	132, 387, 405, 713
TscAI	CASTG	2 cut(s)	385, 400
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	7 cut(s)	17, 178, 448, 595, 608, 638, 684
TspGWI	ACGGA	2 cut(s)	131, 148
TspRI	CASTG	2 cut(s)	385, 400
XapI	RAATTY	2 cut(s)	218, 272
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.