Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012998

Physical Location & Seq

Genomic Coordinates Forward (+)

10756155 .. 10758587

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAGTTCGGTAAGAGCCTGAGCAACCAGATCGACGAGACCCTGCCGGAATGGCGGGACAAGTTCTTGTCCTACAAGGAGCTCAAGAAGCGGTTGAAGCTCATCGAACCCAAAGCCGGCGACCGCCCCGCCAAGCGCCCCAGAATTGACGCCTCCGCCGCCGATTTTAACGACGGCGGCAATAAGGAGGGCATTTCCGCGGCGGAGATCAATTTCATTCAATTGTTGGAGGACGAGCTCGAGAAATTTAACTCCTTCTTCGTCGAGAAGGAGGAAGAGTACATTATTAGATTGAAGGAGATACAAGACAGAGTAGCGAAAGCAAAGCCTTACAGCGACGAGATTATTAAGATCCGCAAGGAGATTGTGGACTTCCATGGAGAGATGGTTTTGTTGGAGAATTACAGCGCCCTCAACTATACAGGATTGGTAAAGATACTGAAGAAGTACGATAAACGAACAGGTGCTCTTATGCGCTTGCCCTTTATCCAGAAGGTCTTGCAACAGCCTTTCTTCACCACCGACTTGCTCTACAAGCTCGTGAAGGAGTGTGAGGGAACGCTTGACCAGCTCTTTTCCATGAACGTTGATCGATCCGTATCAACTGAAGGATCTTATGGGGATGACGGGCGCAATCCTTCAACTTCTGCCCCTACCAAGAGTGATGGTATTAGCAGAGTATCCAGAGAACTTTCAGAGATAGAGTATATGGAGAGCTTGTACATGAAAAGTACAATATCGGCATTGCGCTCGTTGAAGGAAATTAGGAGCGGAAGCTCAACGGTTAGCGTCTTCTCGTTGCCGCCGCTGCAAACAAGCGGATTGGAAGACGCATGGAAAAAAGCCCCTGTTCTGGAACAAGTTGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

291

Amino Acids

33.03

Weight (kDa)

6.7

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 40	5.7e-09	SPX domain
SPX	PF03105	111 - 166	4.3e-11	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20150
fragaria_vesca	FvH4_1g03200 FvH4_1g03200
malus_domestica	MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica	Prupe.7G243500_v2.0.a1
pyrus_communis	pycom02g02600 pycom15g15440
rosa_chinensis	RchiOBHm_Chr2g0088351
rosa_laevigata	RLG00000015944
rosa_multiflora	Rmu_sc0004235.1_g000027
rosa_roxburghii	Rroxscaffold_2G00152740
rosa_rugosa	Rorug01G0483000
rosa_samantha	Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana	Rw2G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	771
AccII	CGCG	1 cut(s)	200
AclI	AACGTT	1 cut(s)	585
AclWI	GGATC	3 cut(s)	346, 588, 619
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	2 cut(s)	461, 627
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	4 cut(s)	281, 449, 722, 733
AfiI	CCNNNNNNNGG	2 cut(s)	116, 853
AgsI	TTSAA	5 cut(s)	97, 221, 295, 642, 757
AluBI	AGCT	7 cut(s)	82, 100, 238, 538, 571, 717, 777
AluI	AGCT	7 cut(s)	82, 100, 238, 538, 571, 717, 777
Alw21I	GWGCWC	3 cut(s)	84, 240, 469
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	346, 588, 619
Ama87I	CYCGRG	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	808
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	5 cut(s)	138, 410, 477, 633, 750
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	84, 240
BauI	CACGAG	1 cut(s)	539
BbsI	GAAGAC	2 cut(s)	784, 834
Bbv12I	GWGCWC	3 cut(s)	84, 240, 469
BbvI	GCAGC	1 cut(s)	795
BccI	CCATC	2 cut(s)	379, 659
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 732, 766
BciVI	GTATCC	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	32
BfoI	RGCGCY	2 cut(s)	139, 411
BfuI	GTATCC	1 cut(s)	691
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	6 cut(s)	159, 178, 201, 803, 806, 809
BlsI	GCNGC	6 cut(s)	160, 179, 202, 804, 807, 810
BmeT110I	CYCGRG	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	784, 834
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	198, 376
BsaXI	ACNNNNNCTCC	6 cut(s)	263, 293, 372, 402, 704, 734
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 853
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	598
BseCI	ATCGAT	1 cut(s)	592
BseDI	CCNNGG	2 cut(s)	198, 376
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	598
BseLI	CCNNNNNNNGG	2 cut(s)	116, 853
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	592
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	84, 240, 469
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	47, 117
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	116, 853
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	3 cut(s)	84, 240, 469
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
Bsp19I	CCATGG	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	200
BspPI	GGATC	3 cut(s)	346, 588, 619
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	720
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	198, 376
BssMI	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	2 cut(s)	118, 479
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	2 cut(s)	198, 376
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	2 cut(s)	139, 411
BstHHI	GCGC	5 cut(s)	138, 410, 477, 633, 750
BstKTI	GATC	6 cut(s)	33, 210, 354, 592, 596, 614
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	7 cut(s)	52, 88, 97, 158, 535, 568, 808
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	795
BstV2I	GAAGAC	2 cut(s)	784, 834
BstX2I	RGATCY	2 cut(s)	351, 611
BstYI	RGATCY	2 cut(s)	351, 611
Bsu15I	ATCGAT	1 cut(s)	592
BsuI	GTATCC	1 cut(s)	691
BsuTUI	ATCGAT	1 cut(s)	592
BtgI	CCRYGG	2 cut(s)	198, 376
BtsCI	GGATG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	118, 479
CfoI	GCGC	5 cut(s)	138, 410, 477, 633, 750
Cfr10I	RCCGGY	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	592
CseI	GACGC	3 cut(s)	158, 778, 839
Csp6I	GTAC	4 cut(s)	280, 448, 721, 732
CviAII	CATG	4 cut(s)	377, 580, 724, 834
CviQI	GTAC	4 cut(s)	280, 448, 721, 732
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	6 cut(s)	32, 209, 353, 591, 595, 613
DpnII	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	145, 218
Ecl136II	GAGCTC	2 cut(s)	82, 238
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	2 cut(s)	84, 240
Eco31I	GGTCTC	1 cut(s)	32
Eco53kI	GAGCTC	2 cut(s)	82, 238
Eco57I	CTGAAG	2 cut(s)	461, 627
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	2 cut(s)	82, 238
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	84, 240
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	4 cut(s)	380, 583, 727, 837
FaiI	YATR	9 cut(s)	378, 420, 473, 581, 618, 708, 710, 725, 835
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	376, 579, 723, 833
FauI	CCCGC	2 cut(s)	48, 136
Fnu4HI	GCNGC	6 cut(s)	159, 178, 201, 803, 806, 809
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	2 cut(s)	84, 240
Fsp4HI	GCNGC	6 cut(s)	159, 178, 201, 803, 806, 809
GlaI	GCGC	5 cut(s)	137, 409, 476, 632, 749
GluI	GCNGC	6 cut(s)	159, 178, 201, 803, 806, 809
HaeII	RGCGCY	2 cut(s)	139, 411
HapII	CCGG	2 cut(s)	47, 117
HgaI	GACGC	3 cut(s)	158, 778, 839
HhaI	GCGC	5 cut(s)	138, 410, 477, 633, 750
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	380, 583, 727, 837
Hin6I	GCGC	5 cut(s)	136, 408, 475, 631, 748
HinP1I	GCGC	5 cut(s)	136, 408, 475, 631, 748
HpaII	CCGG	2 cut(s)	47, 117
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	697
Hpy188III	TCNNGA	7 cut(s)	85, 241, 265, 490, 541, 684, 854
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	4 cut(s)	38, 176, 266, 341
HpyAV	CCTTC	8 cut(s)	262, 265, 289, 487, 538, 602, 648, 751
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	2 cut(s)	502, 811
HpyF10VI	GCNNNNNNNGC	7 cut(s)	52, 88, 97, 158, 535, 568, 808
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	380, 583, 727, 837
HspAI	GCGC	5 cut(s)	136, 408, 475, 631, 748
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
LmnI	GCTCC	2 cut(s)	79, 768
Lsp1109I	GCAGC	1 cut(s)	795
MaeII	ACGT	1 cut(s)	585
MalI	GATC	6 cut(s)	32, 209, 353, 591, 595, 613
MbiI	CCGCTC	1 cut(s)	771
MboI	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
MboII	GAAGA	6 cut(s)	250, 287, 454, 505, 784, 839
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	2 cut(s)	351, 611
MhlI	GDGCHC	3 cut(s)	84, 240, 469
MluCI	AATT	6 cut(s)	144, 211, 221, 245, 400, 762
MmeI	TCCRAC	2 cut(s)	207, 375
MnlI	CCTC	6 cut(s)	163, 181, 223, 265, 422, 547
MroNI	GCCGGC	1 cut(s)	116
MseI	TTAA	3 cut(s)	168, 249, 348
MspA1I	CMGCKG	2 cut(s)	200, 808
MspI	CCGG	2 cut(s)	47, 117
MunI	CAATTG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	52, 88, 97, 158, 535, 568, 808
NaeI	GCCGGC	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
NgoMIV	GCCGGC	1 cut(s)	116
NlaIII	CATG	4 cut(s)	380, 583, 727, 837
PaeR7I	CTCGAG	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	118
PkrI	GCNGC	6 cut(s)	160, 179, 202, 804, 807, 810
Psp124BI	GAGCTC	2 cut(s)	84, 240
Psp1406I	AACGTT	1 cut(s)	585
PsuI	RGATCY	2 cut(s)	351, 611
RsaI	GTAC	4 cut(s)	281, 449, 722, 733
RsaNI	GTAC	4 cut(s)	280, 448, 721, 732
SacI	GAGCTC	2 cut(s)	84, 240
SacII	CCGCGG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	168, 249, 348
SatI	GCNGC	6 cut(s)	159, 178, 201, 803, 806, 809
Sau3AI	GATC	6 cut(s)	30, 207, 351, 589, 593, 611
SduI	GDGCHC	3 cut(s)	84, 240, 469
Sfr274I	CTCGAG	1 cut(s)	239
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	83, 239
SmoI	CTYRAG	2 cut(s)	83, 239
Sse9I	AATT	6 cut(s)	144, 211, 221, 245, 400, 762
SstI	GAGCTC	2 cut(s)	84, 240
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	5 cut(s)	33, 105, 240, 264, 592
TasI	AATT	6 cut(s)	144, 211, 221, 245, 400, 762
TatI	WGTACW	3 cut(s)	279, 720, 731
TauI	GCSGC	5 cut(s)	161, 180, 203, 805, 808
Tru1I	TTAA	3 cut(s)	168, 249, 348
Tru9I	TTAA	3 cut(s)	168, 249, 348
TseI	GCWGC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	17, 205, 596, 740
TspGWI	ACGGA	1 cut(s)	586
XapI	RAATTY	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.