RchiOBHm_Chr2g0088351

SPX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012998
Physical Location & Seq
Forward (+)
2942169 .. 2944419
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46369

Sequence Viewer

Length: 840 bp
ATGAAGTTCGGCAAGAGCCTGAGTAGCCAGATCGACGAGACCCTGCCGGAATGGCGCGACAAGTTCCTCTCCTATAAGGAGCTGAAGAAGCGCCTCAAGCTCATCGAGCCCAAAGGCGGCGGCGACTCCTCGACCCGCCCCGCCAAGCGCCCCAGGCTCGACGGCGACGACATGTCGTCCGAGGAGATCAATTTCATTCAGCTGCTGGAAGACGAGCTGGAGAAGTTCAATTCCTTCTTCGTCGAAAAGGAGGAAGAGTATATTATTAGATTGAAGGAGATACAAGATAGTGTGGCGAAAGTGAAGCATTCGAATGAAGAGGTTATGAAGATACGCAAGGAGATAGTGGATTTTCATGGAGAGATGGTTTTGTTGGAGAATTACAGCGCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTTATTCAGAAGGTCCTGCAACAACCTTTCTTCACCACTGACTTGCTTTACAAGCTTGTGAAGGAGTGCGAGTGCACCCTTGACCAGCTGTTTGCAATGTGTGAACCGCCAGCTTCAAATGAAGCATCTGATGATGCAGATGATGGTCCCTCAACTTCCAAGAGTAACGGACTTAGCAGAGTAAACAAGGAACTTGCAGAGATAGAGTACATCGAGAGCTTATACATGAAAAGCACTATATCGGCATTGCGAGCTTTGAAAGAAATTAGAAGCGGAAGCTCAACTGTGAGCGCATTTTCACTGCCACCACTGCAATTAAGTGGATTAGAAGAAGATGCCTGGAAAAAGGTCCCTGTTCTGGAACAGCTTGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPX

Protein Analysis

279

Amino Acids

31.86

Weight (kDa)

5.34

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 36 9.5e-09 SPX domain
SPX PF03105 103 - 159 2.9e-11 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012998)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20150
fragaria_vesca FvH4_1g03200 FvH4_1g03200
malus_domestica MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica Prupe.7G243500_v2.0.a1
pyrus_communis pycom02g02600 pycom15g15440
rosa_chinensis RchiOBHm_Chr2g0088351
rosa_laevigata RLG00000015944
rosa_multiflora Rmu_sc0004235.1_g000027
rosa_roxburghii Rroxscaffold_2G00152740
rosa_rugosa Rorug01G0483000
rosa_samantha Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana Rw2G003010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 6 cut(s) 117, 120, 136, 141, 569, 735
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 2 cut(s) 428, 671
AfiI CCNNNNNNNGG 2 cut(s) 116, 820
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 4 cut(s) 229, 274, 579, 721
AhdI GACNNNNNGTC 2 cut(s) 172, 175
AjnI CCWGG 2 cut(s) 152, 800
Alw21I GWGCWC 2 cut(s) 448, 539
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 535
AlwNI CAGNNNCTG 1 cut(s) 205
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AspLEI GCGC 6 cut(s) 57, 93, 150, 389, 456, 755
AspS9I GGNCC 3 cut(s) 475, 608, 811
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 311
AvaII GGWCC 3 cut(s) 475, 608, 811
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 448, 539
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 358, 599
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 154, 802
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 3 cut(s) 94, 151, 390
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 3 cut(s) 118, 121, 203
BlsI GCNGC 3 cut(s) 119, 122, 204
Bme1390I CCNGG 2 cut(s) 154, 802
Bme18I GGWCC 3 cut(s) 475, 608, 811
BmeRI GACNNNNNGTC 2 cut(s) 172, 175
BmgT120I GGNCC 3 cut(s) 475, 608, 811
BmiI GGNNCC 2 cut(s) 610, 813
BmrFI CCNGG 2 cut(s) 154, 802
BmsI GCATC 3 cut(s) 586, 596, 787
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 80, 404
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 152, 180
BsaXI ACNNNNNCTCC 6 cut(s) 242, 272, 351, 381, 518, 548
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 820
Bse1I ACTGG 2 cut(s) 411, 445
Bse3DI GCAATG 2 cut(s) 564, 707
BseBI CCWGG 2 cut(s) 154, 802
BseDI CCNNGG 2 cut(s) 152, 180
BseLI CCNNNNNNNGG 2 cut(s) 116, 820
BseMI GCAATG 2 cut(s) 564, 707
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 411, 445
BseRI GAGGAG 2 cut(s) 118, 197
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 448, 539
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 594, 797
BslI CCNNNNNNNGG 2 cut(s) 116, 820
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 594, 797
BsmI GAATGC 1 cut(s) 307
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 111, 448, 539
Bsp143I GATC 2 cut(s) 30, 186
BspACI CCGC 6 cut(s) 117, 120, 136, 141, 569, 735
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 610, 813
BspT104I TTCGAA 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 564, 707
BsrI ACTGG 2 cut(s) 411, 445
BssECI CCNNGG 2 cut(s) 152, 180
BssMI GATC 2 cut(s) 30, 186
Bst2UI CCWGG 2 cut(s) 154, 802
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 2 cut(s) 249, 312
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 458, 573, 714, 831
BstDEI CTNAG 3 cut(s) 20, 635, 834
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 3 cut(s) 94, 151, 390
BstHHI GCGC 6 cut(s) 57, 93, 150, 389, 456, 755
BstKTI GATC 2 cut(s) 33, 189
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 30, 186
BstMWI GCNNNNNNNGC 9 cut(s) 24, 52, 88, 97, 106, 154, 514, 713, 772
BstNI CCWGG 2 cut(s) 154, 802
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 2 cut(s) 152, 800
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 216
BtsI GCAGTG 2 cut(s) 761, 770
BtsIMutI CAGTG 3 cut(s) 498, 761, 770
Cac8I GCNNGC 4 cut(s) 458, 573, 714, 831
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 6 cut(s) 57, 93, 150, 389, 456, 755
Cfr13I GGNCC 3 cut(s) 475, 608, 811
Csp6I GTAC 2 cut(s) 427, 670
CviAII CATG 3 cut(s) 172, 356, 688
CviQI GTAC 2 cut(s) 427, 670
DdeI CTNAG 3 cut(s) 20, 635, 834
DpnI GATC 2 cut(s) 32, 188
DpnII GATC 2 cut(s) 30, 186
DriI GACNNNNNGTC 2 cut(s) 172, 175
Eam1104I CTCTTC 2 cut(s) 249, 312
Eam1105I GACNNNNNGTC 2 cut(s) 172, 175
EarI CTCTTC 2 cut(s) 249, 312
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 475, 608, 811
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 475, 811
EcoRII CCWGG 2 cut(s) 152, 800
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 3 cut(s) 175, 359, 691
FaqI GGGAC 2 cut(s) 594, 797
FatI CATG 3 cut(s) 171, 355, 687
FauI CCCGC 2 cut(s) 143, 148
Fnu4HI GCNGC 3 cut(s) 118, 121, 203
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 118, 121, 203
GlaI GCGC 6 cut(s) 56, 92, 149, 388, 455, 754
GluI GCNGC 3 cut(s) 118, 121, 203
GsuI CTGGAG 1 cut(s) 239
HaeII RGCGCY 3 cut(s) 94, 151, 390
HapII CCGG 1 cut(s) 47
HhaI GCGC 6 cut(s) 57, 93, 150, 389, 456, 755
Hin1II CATG 3 cut(s) 175, 359, 691
Hin6I GCGC 6 cut(s) 55, 91, 148, 387, 454, 753
HinP1I GCGC 6 cut(s) 55, 91, 148, 387, 454, 753
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 1 cut(s) 125
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 3 cut(s) 537, 566, 646
Hpy188I TCNGA 3 cut(s) 181, 471, 592
Hpy188III TCNNGA 3 cut(s) 421, 676, 821
Hpy8I GTNNAC 3 cut(s) 537, 566, 646
Hpy99I CGWCG 4 cut(s) 38, 164, 170, 245
HpyAV CCTTC 4 cut(s) 244, 268, 466, 517
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 6 cut(s) 481, 537, 557, 599, 659, 775
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 52, 88, 97, 106, 154, 514, 713, 772
HpyF3I CTNAG 3 cut(s) 20, 635, 834
Hsp92II CATG 3 cut(s) 175, 359, 691
HspAI GCGC 6 cut(s) 55, 91, 148, 387, 454, 753
Kzo9I GATC 2 cut(s) 30, 186
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 3 cut(s) 586, 596, 787
MaeIII GTNAC 1 cut(s) 626
MalI GATC 2 cut(s) 32, 188
MboI GATC 2 cut(s) 30, 186
MboII GAAGA 9 cut(s) 97, 221, 229, 266, 329, 340, 484, 803, 806
MhlI GDGCHC 3 cut(s) 111, 448, 539
MluCI AATT 5 cut(s) 190, 229, 379, 726, 776
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 8 cut(s) 77, 104, 139, 175, 244, 313, 401, 622
MseI TTAA 1 cut(s) 779
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 202, 550
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 154, 802
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 154, 802
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 9 cut(s) 24, 52, 88, 97, 106, 154, 514, 713, 772
NdeII GATC 2 cut(s) 30, 186
NlaIII CATG 3 cut(s) 175, 359, 691
NlaIV GGNNCC 2 cut(s) 610, 813
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 311
PciI ACATGT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 119, 122, 204
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 2 cut(s) 475, 811
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 2 cut(s) 475, 811
Psp6I CCWGG 2 cut(s) 152, 800
PspGI CCWGG 2 cut(s) 152, 800
PspN4I GGNNCC 2 cut(s) 610, 813
PspPI GGNCC 3 cut(s) 475, 608, 811
PspPPI RGGWCCY 2 cut(s) 475, 811
PstNI CAGNNNCTG 1 cut(s) 205
PvuII CAGCTG 2 cut(s) 202, 550
RsaI GTAC 2 cut(s) 428, 671
RsaNI GTAC 2 cut(s) 427, 670
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 779
SatI GCNGC 3 cut(s) 118, 121, 203
Sau3AI GATC 2 cut(s) 30, 186
Sau96I GGNCC 3 cut(s) 475, 608, 811
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 154, 802
SduI GDGCHC 3 cut(s) 111, 448, 539
SfaNI GCATC 3 cut(s) 586, 596, 787
SfuI TTCGAA 1 cut(s) 311
SinI GGWCC 3 cut(s) 475, 608, 811
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 95, 419
SmoI CTYRAG 2 cut(s) 95, 419
Sse9I AATT 5 cut(s) 190, 229, 379, 726, 776
SsiI CCGC 6 cut(s) 117, 120, 136, 141, 569, 735
StyD4I CCNGG 2 cut(s) 152, 800
TaaI ACNGT 1 cut(s) 748
TaqI TCGA 7 cut(s) 33, 105, 131, 159, 243, 311, 675
TasI AATT 5 cut(s) 190, 229, 379, 726, 776
TatI WGTACW 1 cut(s) 669
TauI GCSGC 2 cut(s) 120, 123
Tru1I TTAA 1 cut(s) 779
Tru9I TTAA 1 cut(s) 779
TscAI CASTG 3 cut(s) 505, 768, 777
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 7 cut(s) 17, 184, 330, 341, 344, 597, 704
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 3 cut(s) 505, 768, 777
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 3 cut(s) 475, 608, 811
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.