Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012998

Physical Location & Seq

Genomic Coordinates Reverse (-)

20840965 .. 20843503

Gene Structure 2539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G243500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAGTTCGGTAAGAGCCTGAGCAGCCAGATCGAGGAAACCTTGCCGGAATGGCGGGACAAGTTCTTGTCCTACAAGGAGCTCAAGAAGTGCCTGAAGCTCATCGAGCCCAAAGGCGGTGACAGGCCCACGAAGCGTCCAAGGATTGATGCCTCCGCTGATTGTGCGGACGCTCACGGAGATAAGGAGGGCATGTCCACGGCGGAGATCAATTTCATTCAGTTGTTGGAGGACGAGCTCGAGAAATTTAACTCCTTCTTTGTCGAAAAGGAGGAAGAATATATTATTACCTTGAAGGAGATACAAGACAGGGTGGCAAAAGCAAAGCATTCCAATGAAGAGATTACTAAGATTCGCAAGGAGATAGTGGACTTCCATGGAGAGATGGTTTTGCTGGAGAATTATAGTGCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTCATTCAGAAGGTCTTGCAACAGCCTTTCTTCACCACCGACTTGCTCTACAAGCTCGTGAAGGAGTGTGAGATTACGCTTGACCAGCTCTTTGCCATTGCTGAACAGCCCATTCCAAATGAAGGATCTGATGGGGATGAAGGGTGTGATCCTTCAACTTCTGCCACTACCACTACCGAGAATGATGGCATTCCCAGAGTAAACAAGGGACTAGCAGAGATCGAGTACATTGAAAGCTTGTACATGAAAAGTACTATATCGGCGTTGCGGGCTTTGAAGGAAATTAGGAGTGGAAGCTCTACTGTTAGTGTCTTTTCGTTGCCGCCACTGCAAATAAGTGAATTAGAGGATGAATGGAAAAAAGTCCCTGTTCTGGAACAAGTTGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

292

Amino Acids

33.08

Weight (kDa)

5.12

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20150
fragaria_vesca	FvH4_1g03200 FvH4_1g03200
malus_domestica	MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica	Prupe.7G243500_v2.0.a1
pyrus_communis	pycom02g02600 pycom15g15440
rosa_chinensis	RchiOBHm_Chr2g0088351
rosa_laevigata	RLG00000015944
rosa_multiflora	Rmu_sc0004235.1_g000027
rosa_roxburghii	Rroxscaffold_2G00152740
rosa_rugosa	Rorug01G0483000
rosa_samantha	Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana	Rw2G003010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	55, 117, 156, 167, 203, 751, 806
AclWI	GGATC	2 cut(s)	616, 626
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	4 cut(s)	449, 710, 725, 736
AfiI	CCNNNNNNNGG	4 cut(s)	34, 116, 605, 856
AgsI	TTSAA	4 cut(s)	295, 639, 716, 760
AluBI	AGCT	7 cut(s)	82, 100, 238, 538, 571, 720, 780
AluI	AGCT	7 cut(s)	82, 100, 238, 538, 571, 720, 780
Alw21I	GWGCWC	3 cut(s)	84, 240, 469
AlwI	GGATC	2 cut(s)	616, 626
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	131, 508
AvaI	CYCGRG	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	3 cut(s)	84, 111, 240
BauI	CACGAG	1 cut(s)	539
Bbv12I	GWGCWC	3 cut(s)	84, 240, 469
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	3 cut(s)	379, 608, 662
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BfaI	CTAG	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	25, 806
BlsI	GCNGC	2 cut(s)	26, 807
BmcAI	AGTACT	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	2 cut(s)	68, 425
BsaJI	CCNNGG	3 cut(s)	140, 198, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 116, 605, 856
Bse1I	ACTGG	2 cut(s)	432, 466
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	140, 198, 376
BseGI	GGATG	2 cut(s)	625, 838
BseLI	CCNNNNNNNGG	4 cut(s)	34, 116, 605, 856
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	2 cut(s)	432, 466
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	3 cut(s)	84, 240, 469
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	3 cut(s)	71, 705, 833
BslI	CCNNNNNNNGG	4 cut(s)	34, 116, 605, 856
BsmFI	GGGAC	3 cut(s)	71, 705, 833
BsmI	GAATGC	2 cut(s)	328, 672
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	5 cut(s)	84, 111, 240, 412, 469
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	5 cut(s)	30, 207, 608, 631, 702
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	7 cut(s)	55, 117, 156, 167, 203, 751, 806
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	616, 626
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	432, 466
BssECI	CCNNGG	3 cut(s)	140, 198, 376
BssMI	GATC	5 cut(s)	30, 207, 608, 631, 702
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	2 cut(s)	140, 376
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	787
Bst6I	CTCTTC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	479, 753
BstDEI	CTNAG	2 cut(s)	20, 348
BstDSI	CCRYGG	2 cut(s)	198, 376
BstF5I	GGATG	2 cut(s)	625, 838
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	5 cut(s)	33, 210, 611, 634, 705
BstMBI	GATC	5 cut(s)	30, 207, 608, 631, 702
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 52, 106, 133, 164, 535, 568, 752, 811
BstNSI	RCATGY	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	198, 376
BtsCI	GGATG	2 cut(s)	625, 838
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	2 cut(s)	479, 753
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	2 cut(s)	125, 179
Csp6I	GTAC	4 cut(s)	448, 709, 724, 735
CviAII	CATG	3 cut(s)	193, 377, 727
CviQI	GTAC	4 cut(s)	448, 709, 724, 735
DdeI	CTNAG	2 cut(s)	20, 348
DpnI	GATC	5 cut(s)	32, 209, 610, 633, 704
DpnII	GATC	5 cut(s)	30, 207, 608, 631, 702
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	2 cut(s)	82, 238
Eco130I	CCWWGG	2 cut(s)	140, 376
Eco24I	GRGCYC	3 cut(s)	84, 111, 240
Eco53kI	GAGCTC	2 cut(s)	82, 238
Eco57I	CTGAAG	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	2 cut(s)	82, 238
EcoT14I	CCWWGG	2 cut(s)	140, 376
EcoT38I	GRGCYC	3 cut(s)	84, 111, 240
ErhI	CCWWGG	2 cut(s)	140, 376
FaeI	CATG	3 cut(s)	196, 380, 730
FaiI	YATR	8 cut(s)	194, 282, 378, 405, 420, 473, 728, 740
FaqI	GGGAC	3 cut(s)	71, 705, 833
FatI	CATG	3 cut(s)	192, 376, 726
FauI	CCCGC	2 cut(s)	48, 744
Fnu4HI	GCNGC	2 cut(s)	25, 806
FokI	GGATG	2 cut(s)	632, 845
FriOI	GRGCYC	3 cut(s)	84, 111, 240
Fsp4HI	GCNGC	2 cut(s)	25, 806
FspBI	CTAG	1 cut(s)	695
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	2 cut(s)	25, 806
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	2 cut(s)	125, 179
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	196, 380, 730
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	131, 508
Hpy166II	GTNNAC	3 cut(s)	198, 370, 685
Hpy188I	TCNGA	2 cut(s)	492, 613
Hpy188III	TCNNGA	5 cut(s)	85, 241, 442, 541, 857
Hpy8I	GTNNAC	3 cut(s)	198, 370, 685
HpyAV	CCTTC	9 cut(s)	265, 289, 487, 493, 538, 599, 617, 645, 754
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4V	TGCA	2 cut(s)	502, 814
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 52, 106, 133, 164, 535, 568, 752, 811
HpyF3I	CTNAG	2 cut(s)	20, 348
Hsp92II	CATG	3 cut(s)	196, 380, 730
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	30, 207, 608, 631, 702
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	695
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	5 cut(s)	32, 209, 610, 633, 704
MboI	GATC	5 cut(s)	30, 207, 608, 631, 702
MboII	GAAGA	3 cut(s)	287, 350, 505
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	5 cut(s)	84, 111, 240, 412, 469
MluCI	AATT	5 cut(s)	211, 245, 400, 765, 824
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	28, 163, 181, 223, 265, 422, 823
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	47
Mva1269I	GAATGC	2 cut(s)	328, 672
MwoI	GCNNNNNNNGC	9 cut(s)	24, 52, 106, 133, 164, 535, 568, 752, 811
NcoI	CCATGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	30, 207, 608, 631, 702
NlaIII	CATG	3 cut(s)	196, 380, 730
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	239
PctI	GAATGC	2 cut(s)	328, 672
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	26, 807
Psp124BI	GAGCTC	2 cut(s)	84, 240
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	4 cut(s)	449, 710, 725, 736
RsaNI	GTAC	4 cut(s)	448, 709, 724, 735
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	2 cut(s)	84, 240
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	25, 806
Sau3AI	GATC	5 cut(s)	30, 207, 608, 631, 702
Sau96I	GGNCC	1 cut(s)	126
ScaI	AGTACT	1 cut(s)	736
SduI	GDGCHC	5 cut(s)	84, 111, 240, 412, 469
SfaNI	GCATC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	3 cut(s)	83, 239, 440
SmoI	CTYRAG	3 cut(s)	83, 239, 440
Sse9I	AATT	5 cut(s)	211, 245, 400, 765, 824
SsiI	CCGC	7 cut(s)	55, 117, 156, 167, 203, 751, 806
SspMI	CTAG	1 cut(s)	695
SstI	GAGCTC	2 cut(s)	84, 240
StyI	CCWWGG	2 cut(s)	140, 376
TaaI	ACNGT	1 cut(s)	787
TaqI	TCGA	5 cut(s)	33, 105, 240, 264, 705
TasI	AATT	5 cut(s)	211, 245, 400, 765, 824
TatI	WGTACW	3 cut(s)	708, 723, 734
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	8 cut(s)	17, 205, 351, 475, 618, 636, 743, 849
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	816
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	239
XspI	CTAG	1 cut(s)	695
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.