Rh2DG037900

SPX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012998
Physical Location & Seq
Forward (+)
2619579 .. 2622284
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG037900.1

Sequence Viewer

Length: 852 bp
ATGAAGTTCGGCAAGAGCCTGAGCAGCCAGATCGACGAGACCCTGCCGGAATGGCGCGACAAGTTCCTCTCCTACAAGGAGCTGAAGAAGCGCCTCAAGCTCATCGAGCCCAAAGGCGGCGGAGAAGGCGGCGGCGACTCCTCGACCCGCCCCGCCAAGCGCCCCAGGCTCGACGGCGACGACATGTCGTCCGAGGAGATCAATTTCATTCAGCTCCTGGAAGACGAGCTGGAGAAGTTCAATTCCTTCTTCGTCGAAAAGGAAGAAGAGTATATTATTAGATTGAAGGAGATACAAGATAGTGTGGCTAAAGTGAAGCATTCGAATGAAGAGGTTATGAAGATACGCAAGGAGATAGTGGATTTTCATGGAGAGATGGTTTTGTTGGAGAATTACAGTGCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTTATTCAGAAGGTCCTGCGACAACCTTTCTTCACCACTGACTTGCTTTACAAGCTTGTGAAGGAGTGCGAGTGCACCCTTGACCAGCTGTTTGCAATGTGTGAACCGCCAGCTTCAAATGAAGCATCTGATGATGCAGATGATGGTCCCTCAACTTCCAAGAGTAACGGACTTAGCAGAGTAAACAAGGAACTTGCAGAGATAGAGTACATCGAGAGCTTATACATGAAAAGCACTATATCGGCATTGCGAGCTTTGAAAGAAATTAGAAGCGGAAGCTCAACTGTGAGCGCATTTTCACTGCCACCACTGCAATTAAGTGGATTAGAAGAAGATGCCTGGAAAAAGGTCCCTGTTCTGGAACAGCTTGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPX

Protein Analysis

283

Amino Acids

32.19

Weight (kDa)

5.35

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 35 1.3e-08 SPX domain
SPX PF03105 106 - 163 2.5e-11 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012998)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20150
fragaria_vesca FvH4_1g03200 FvH4_1g03200
malus_domestica MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica Prupe.7G243500_v2.0.a1
pyrus_communis pycom02g02600 pycom15g15440
rosa_chinensis RchiOBHm_Chr2g0088351
rosa_laevigata RLG00000015944
rosa_multiflora Rmu_sc0004235.1_g000027
rosa_roxburghii Rroxscaffold_2G00152740
rosa_rugosa Rorug01G0483000
rosa_samantha Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana Rw2G003010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 8 cut(s) 117, 120, 129, 132, 148, 153, 581, 747
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 2 cut(s) 440, 683
AfiI CCNNNNNNNGG 2 cut(s) 116, 832
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 4 cut(s) 241, 286, 591, 733
AhdI GACNNNNNGTC 2 cut(s) 184, 187
AjnI CCWGG 3 cut(s) 164, 216, 812
Alw21I GWGCWC 2 cut(s) 460, 551
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 547
AlwNI CAGNNNCTG 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 24
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AspLEI GCGC 5 cut(s) 57, 93, 162, 468, 767
AspS9I GGNCC 3 cut(s) 487, 620, 823
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 323
AvaII GGWCC 3 cut(s) 487, 620, 823
BaeGI GKGCMC 2 cut(s) 403, 551
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 460, 551
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 370, 611
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 3 cut(s) 166, 218, 814
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 2 cut(s) 94, 163
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 4 cut(s) 25, 118, 130, 133
BlsI GCNGC 4 cut(s) 26, 119, 131, 134
Bme1390I CCNGG 3 cut(s) 166, 218, 814
Bme18I GGWCC 3 cut(s) 487, 620, 823
BmeRI GACNNNNNGTC 2 cut(s) 184, 187
BmgT120I GGNCC 3 cut(s) 487, 620, 823
BmiI GGNNCC 2 cut(s) 622, 825
BmrFI CCNGG 3 cut(s) 166, 218, 814
BmsI GCATC 3 cut(s) 598, 608, 799
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 80, 416
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 164, 192
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 832
Bse1I ACTGG 2 cut(s) 423, 457
Bse3DI GCAATG 2 cut(s) 576, 719
BseBI CCWGG 3 cut(s) 166, 218, 814
BseDI CCNNGG 2 cut(s) 164, 192
BseLI CCNNNNNNNGG 2 cut(s) 116, 832
BseMI GCAATG 2 cut(s) 576, 719
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 423, 457
BseRI GAGGAG 2 cut(s) 130, 209
BseSI GKGCMC 2 cut(s) 403, 551
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 460, 551
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 606, 809
BslI CCNNNNNNNGG 2 cut(s) 116, 832
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 606, 809
BsmI GAATGC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 4 cut(s) 111, 403, 460, 551
Bsp143I GATC 2 cut(s) 30, 198
BspACI CCGC 8 cut(s) 117, 120, 129, 132, 148, 153, 581, 747
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 622, 825
BspT104I TTCGAA 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 576, 719
BsrI ACTGG 2 cut(s) 423, 457
BssECI CCNNGG 2 cut(s) 164, 192
BssMI GATC 2 cut(s) 30, 198
Bst2UI CCWGG 3 cut(s) 166, 218, 814
Bst4CI ACNGT 2 cut(s) 398, 760
Bst6I CTCTTC 2 cut(s) 261, 324
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 4 cut(s) 470, 585, 726, 843
BstDEI CTNAG 3 cut(s) 20, 647, 846
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 2 cut(s) 94, 163
BstHHI GCGC 5 cut(s) 57, 93, 162, 468, 767
BstKTI GATC 2 cut(s) 33, 201
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 30, 198
BstNI CCWGG 3 cut(s) 166, 218, 814
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 3 cut(s) 164, 216, 812
BstSLI GKGCMC 2 cut(s) 403, 551
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 228
BtsI GCAGTG 2 cut(s) 773, 782
BtsIMutI CAGTG 4 cut(s) 403, 510, 773, 782
Cac8I GCNNGC 4 cut(s) 470, 585, 726, 843
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 5 cut(s) 57, 93, 162, 468, 767
Cfr13I GGNCC 3 cut(s) 487, 620, 823
Csp6I GTAC 2 cut(s) 439, 682
CviAII CATG 3 cut(s) 184, 368, 700
CviQI GTAC 2 cut(s) 439, 682
DdeI CTNAG 3 cut(s) 20, 647, 846
DpnI GATC 2 cut(s) 32, 200
DpnII GATC 2 cut(s) 30, 198
DriI GACNNNNNGTC 2 cut(s) 184, 187
Eam1104I CTCTTC 2 cut(s) 261, 324
Eam1105I GACNNNNNGTC 2 cut(s) 184, 187
EarI CTCTTC 2 cut(s) 261, 324
EciI GGCGGA 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 487, 620, 823
Eco57I CTGAAG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 487, 823
EcoRII CCWGG 3 cut(s) 164, 216, 812
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 3 cut(s) 187, 371, 703
FaiI YATR 9 cut(s) 185, 273, 338, 369, 411, 464, 697, 701, 713
FaqI GGGAC 2 cut(s) 606, 809
FatI CATG 3 cut(s) 183, 367, 699
FauI CCCGC 2 cut(s) 155, 160
Fnu4HI GCNGC 4 cut(s) 25, 118, 130, 133
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 25, 118, 130, 133
GlaI GCGC 5 cut(s) 56, 92, 161, 467, 766
GluI GCNGC 4 cut(s) 25, 118, 130, 133
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 2 cut(s) 94, 163
HapII CCGG 1 cut(s) 47
HhaI GCGC 5 cut(s) 57, 93, 162, 468, 767
Hin1II CATG 3 cut(s) 187, 371, 703
Hin6I GCGC 5 cut(s) 55, 91, 160, 466, 765
HinP1I GCGC 5 cut(s) 55, 91, 160, 466, 765
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 3 cut(s) 549, 578, 658
Hpy188I TCNGA 3 cut(s) 193, 483, 604
Hpy188III TCNNGA 3 cut(s) 433, 688, 833
Hpy8I GTNNAC 3 cut(s) 549, 578, 658
Hpy99I CGWCG 4 cut(s) 38, 176, 182, 257
HpyAV CCTTC 5 cut(s) 119, 256, 280, 478, 529
HpyCH4III ACNGT 2 cut(s) 398, 760
HpyCH4V TGCA 5 cut(s) 549, 569, 611, 671, 787
HpyF3I CTNAG 3 cut(s) 20, 647, 846
Hsp92II CATG 3 cut(s) 187, 371, 703
HspAI GCGC 5 cut(s) 55, 91, 160, 466, 765
Kzo9I GATC 2 cut(s) 30, 198
LmnI GCTCC 2 cut(s) 79, 219
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 3 cut(s) 598, 608, 799
MaeIII GTNAC 1 cut(s) 638
MalI GATC 2 cut(s) 32, 200
MboI GATC 2 cut(s) 30, 198
MhlI GDGCHC 4 cut(s) 111, 403, 460, 551
MluCI AATT 5 cut(s) 202, 241, 391, 738, 788
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 77, 104, 151, 187, 325, 413, 634
MseI TTAA 1 cut(s) 791
MslI CAYNNNNRTG 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 166, 218, 814
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 3 cut(s) 166, 218, 814
MvnI CGCG 1 cut(s) 57
NdeII GATC 2 cut(s) 30, 198
NlaIII CATG 3 cut(s) 187, 371, 703
NlaIV GGNNCC 2 cut(s) 622, 825
NspI RCATGY 1 cut(s) 187
NspV TTCGAA 1 cut(s) 323
PciI ACATGT 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 4 cut(s) 26, 119, 131, 134
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 2 cut(s) 487, 823
PscI ACATGT 1 cut(s) 183
Psp5II RGGWCCY 2 cut(s) 487, 823
Psp6I CCWGG 3 cut(s) 164, 216, 812
PspGI CCWGG 3 cut(s) 164, 216, 812
PspN4I GGNNCC 2 cut(s) 622, 825
PspPI GGNCC 3 cut(s) 487, 620, 823
PspPPI RGGWCCY 2 cut(s) 487, 823
PstNI CAGNNNCTG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 440, 683
RsaNI GTAC 2 cut(s) 439, 682
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 791
SatI GCNGC 4 cut(s) 25, 118, 130, 133
Sau3AI GATC 2 cut(s) 30, 198
Sau96I GGNCC 3 cut(s) 487, 620, 823
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 3 cut(s) 166, 218, 814
SduI GDGCHC 4 cut(s) 111, 403, 460, 551
SfaNI GCATC 3 cut(s) 598, 608, 799
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 3 cut(s) 487, 620, 823
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 2 cut(s) 95, 431
SmoI CTYRAG 2 cut(s) 95, 431
Sse9I AATT 5 cut(s) 202, 241, 391, 738, 788
SsiI CCGC 8 cut(s) 117, 120, 129, 132, 148, 153, 581, 747
StyD4I CCNGG 3 cut(s) 164, 216, 812
TaaI ACNGT 2 cut(s) 398, 760
TaqI TCGA 7 cut(s) 33, 105, 143, 171, 255, 323, 687
TasI AATT 5 cut(s) 202, 241, 391, 738, 788
TatI WGTACW 1 cut(s) 681
TauI GCSGC 3 cut(s) 120, 132, 135
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 4 cut(s) 403, 517, 780, 789
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 7 cut(s) 17, 196, 342, 353, 356, 609, 716
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 4 cut(s) 403, 517, 780, 789
VneI GTGCAC 1 cut(s) 547
VpaK11BI GGWCC 3 cut(s) 487, 620, 823
XceI RCATGY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.