Rw2G003010

SPX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012998
Physical Location & Seq
Forward (+)
2844583 .. 2847012
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G003010.1

Sequence Viewer

Length: 669 bp
ATGTCGTCCGAGGAGATCAATTTCATTCAGCTCCTGGAAGACGAGCTGGAGAAGTTCAATTCCTTCTTCGTCGAAAAGGAGGAAGAGTATATTATTAGATTGAAGGAGATACAAGATAGTGTGGCGAAAGTGAAGCATTCGAATGAAGAGGTTATGAAGATACGCAAGGAGATAGTGGATTTTCATGGAGAGATGGTTTTGTTGGAGAATTACAGTGCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTTATTCAGAAGGTCCTGCGACAACCTTTCTTCACCACTGACTTGCTTTACAAGCTTGTGAAGGAGTGCGAGTGCACCCTTGACCAGCTGTTTGCAATGTGTGAACCGCCAGCTTCAAATGAAGCATCTGATGATGCAGATGATGGTCTCTCAACTTCCAAGAGTAACGGACTTAGCAGAGTAAACAAGGAACTTGCAGAGATAGAGTACATCGAGAGCTTATACATGAAAAGCACTATATCGGCATTGCGAGCTTTGAAAGAAATTAGAAGCGGAAGCTCAACTGTGAGCGCATTTTCACTGCCACCACTGCAATTAAGTGGATTAGAAGAAGATGCCTGGAAAAAGGTCCCTGTTCTGGAACAGCTTGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPX

Protein Analysis

222

Amino Acids

25.37

Weight (kDa)

4.99

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 46 - 102 2e-11 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012998)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20150
fragaria_vesca FvH4_1g03200 FvH4_1g03200
malus_domestica MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica Prupe.7G243500_v2.0.a1
pyrus_communis pycom02g02600 pycom15g15440
rosa_chinensis RchiOBHm_Chr2g0088351
rosa_laevigata RLG00000015944
rosa_multiflora Rmu_sc0004235.1_g000027
rosa_roxburghii Rroxscaffold_2G00152740
rosa_rugosa Rorug01G0483000
rosa_samantha Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana Rw2G003010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 398, 564
AfaI GTAC 2 cut(s) 257, 500
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 4 cut(s) 58, 103, 408, 550
AjnI CCWGG 2 cut(s) 33, 629
AluBI AGCT 9 cut(s) 31, 46, 346, 379, 404, 510, 545, 570, 658
AluI AGCT 9 cut(s) 31, 46, 346, 379, 404, 510, 545, 570, 658
Alw21I GWGCWC 2 cut(s) 277, 368
Alw26I GTCTC 1 cut(s) 443
Alw44I GTGCAC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 34
ApaLI GTGCAC 1 cut(s) 364
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 2 cut(s) 285, 584
AspS9I GGNCC 2 cut(s) 304, 640
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 304, 640
BaeGI GKGCMC 2 cut(s) 220, 368
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 277, 368
BccI CCATC 2 cut(s) 187, 428
BciT130I CCWGG 2 cut(s) 35, 631
BcoDI GTCTC 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 35, 631
Bme18I GGWCC 2 cut(s) 304, 640
BmgT120I GGNCC 2 cut(s) 304, 640
BmiI GGNNCC 1 cut(s) 642
BmrFI CCNGG 2 cut(s) 35, 631
BmsI GCATC 3 cut(s) 415, 425, 616
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 180, 210, 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 2 cut(s) 240, 274
Bse3DI GCAATG 2 cut(s) 393, 536
BseBI CCWGG 2 cut(s) 35, 631
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 2 cut(s) 393, 536
BseNI ACTGG 2 cut(s) 240, 274
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 220, 368
BsiHKAI GWGCWC 2 cut(s) 277, 368
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 626
BsmI GAATGC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 3 cut(s) 220, 277, 368
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 2 cut(s) 398, 564
BspLI GGNNCC 1 cut(s) 642
BspT104I TTCGAA 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 393, 536
BsrI ACTGG 2 cut(s) 240, 274
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 35, 631
Bst4CI ACNGT 2 cut(s) 215, 577
Bst6I CTCTTC 2 cut(s) 78, 141
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 4 cut(s) 287, 402, 543, 660
BstDEI CTNAG 2 cut(s) 464, 663
BstHHI GCGC 2 cut(s) 285, 584
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 343, 542, 601
BstNI CCWGG 2 cut(s) 35, 631
BstSCI CCNGG 2 cut(s) 33, 629
BstSLI GKGCMC 2 cut(s) 220, 368
BstV2I GAAGAC 1 cut(s) 45
BtsI GCAGTG 2 cut(s) 590, 599
BtsIMutI CAGTG 4 cut(s) 220, 327, 590, 599
Cac8I GCNNGC 4 cut(s) 287, 402, 543, 660
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 2 cut(s) 285, 584
Cfr13I GGNCC 2 cut(s) 304, 640
Csp6I GTAC 2 cut(s) 256, 499
CviAII CATG 2 cut(s) 185, 517
CviJI RGCY 9 cut(s) 31, 46, 346, 379, 404, 510, 545, 570, 658
CviKI_1 RGCY 9 cut(s) 31, 46, 346, 379, 404, 510, 545, 570, 658
CviQI GTAC 2 cut(s) 256, 499
DdeI CTNAG 2 cut(s) 464, 663
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 78, 141
EarI CTCTTC 2 cut(s) 78, 141
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 304, 640
EcoO109I RGGNCCY 2 cut(s) 304, 640
EcoRII CCWGG 2 cut(s) 33, 629
FaeI CATG 2 cut(s) 188, 520
FaiI YATR 8 cut(s) 90, 155, 186, 228, 281, 514, 518, 530
FaqI GGGAC 1 cut(s) 626
FatI CATG 2 cut(s) 184, 516
GlaI GCGC 2 cut(s) 284, 583
GsuI CTGGAG 1 cut(s) 68
HhaI GCGC 2 cut(s) 285, 584
Hin1II CATG 2 cut(s) 188, 520
Hin6I GCGC 2 cut(s) 283, 582
HinP1I GCGC 2 cut(s) 283, 582
HindIII AAGCTT 1 cut(s) 344
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 366, 395, 475
Hpy188I TCNGA 3 cut(s) 10, 300, 421
Hpy188III TCNNGA 3 cut(s) 250, 505, 650
Hpy8I GTNNAC 3 cut(s) 366, 395, 475
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 73, 97, 295, 346
HpyCH4III ACNGT 2 cut(s) 215, 577
HpyCH4V TGCA 5 cut(s) 366, 386, 428, 488, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 343, 542, 601
HpyF3I CTNAG 2 cut(s) 464, 663
Hsp92II CATG 2 cut(s) 188, 520
HspAI GCGC 2 cut(s) 283, 582
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 36
LweI GCATC 3 cut(s) 415, 425, 616
MaeIII GTNAC 1 cut(s) 455
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 8 cut(s) 50, 58, 95, 158, 169, 313, 632, 635
MhlI GDGCHC 3 cut(s) 220, 277, 368
MluCI AATT 5 cut(s) 19, 58, 208, 555, 605
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 4 cut(s) 4, 73, 142, 230
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 35, 631
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 2 cut(s) 35, 631
MwoI GCNNNNNNNGC 3 cut(s) 343, 542, 601
NdeII GATC 1 cut(s) 15
NlaIII CATG 2 cut(s) 188, 520
NlaIV GGNNCC 1 cut(s) 642
NspV TTCGAA 1 cut(s) 140
PctI GAATGC 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 33
PpuMI RGGWCCY 2 cut(s) 304, 640
Psp5II RGGWCCY 2 cut(s) 304, 640
Psp6I CCWGG 2 cut(s) 33, 629
PspGI CCWGG 2 cut(s) 33, 629
PspN4I GGNNCC 1 cut(s) 642
PspPI GGNCC 2 cut(s) 304, 640
PspPPI RGGWCCY 2 cut(s) 304, 640
PstNI CAGNNNCTG 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 2 cut(s) 257, 500
RsaNI GTAC 2 cut(s) 256, 499
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 608
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 304, 640
ScrFI CCNGG 2 cut(s) 35, 631
SduI GDGCHC 3 cut(s) 220, 277, 368
SfaNI GCATC 3 cut(s) 415, 425, 616
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 2 cut(s) 304, 640
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 5 cut(s) 19, 58, 208, 555, 605
SsiI CCGC 2 cut(s) 398, 564
StyD4I CCNGG 2 cut(s) 33, 629
TaaI ACNGT 2 cut(s) 215, 577
TaqI TCGA 3 cut(s) 72, 140, 504
TasI AATT 5 cut(s) 19, 58, 208, 555, 605
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 4 cut(s) 220, 334, 597, 606
TspDTI ATGAA 6 cut(s) 13, 159, 170, 173, 426, 533
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 4 cut(s) 220, 334, 597, 606
VneI GTGCAC 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 304, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.