Rh2BG037300

SPX domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012998
Physical Location & Seq
Forward (+)
2602176 .. 2605029
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG037300.1

Sequence Viewer

Length: 843 bp
ATGAAGTTCGGCAAGAGCCTGAGTAGCCAGATCGACGAGACCCTGCCGGAATGGCGCGACAAGTTCCTCTCCTACAAGGAGCTGAAGAAGCGCCTCAAGCTCATCGAGCCCAAAGGCGGCGGCGGCGACTCCTCGACCCGCCCCGCCAAGCGCCCCAGGCTCGACGGCGACGACATGTCGTCCGAGGAGATCAATTTCATTCAGCTCCTGGAAGACGAGCTCGAGAAGTTCAATTCCTTCTTCGTCGAAAAGGAAGAAGAGTATATTATTAGATTGAAGGAGATACAAGATAGTGTGGCGAAAGTGAAGCATTCGACTGAAGAGGTTATGAAGATACGCAAGGAGATAGTGGATTTTCATGGAGAGATGGTTTTGTTGGAGAATTACAGTTCCCTCAACTATACAGGACTGGTAAAGATACTCAAGAAGTACGATAAAAGAACTGGTGCTCTTATGCGCTTGCCCTTTATTCAGAAGGTCCTGCGACAACCTTTCTTCACCACTGACTTGCTTTACAAGCTTGTGAAGGAGTGCGAGTGCACCCTTGACCAGCTGTTTGCAATGTGTGAACCGCCAGCTTCAAATGAAGCATCTGATGATGCAGATGATGGTCCCTCAACTTCCAAGAGTAATGGACTTAGCAGAGTAAACAAGGAACTTGCAGAGATAGAGTACATCGAGAGCTTATACATGAAAAGCACTATATCGGCATTGCGAGCTTTGAAAGAAATTAGAAGCGGAAGCTCAACTGTGAGCGCATTTTCACTGCCACCACTGCAATTAAGTGGATTAGAAGAAGATGCCTGGAAAAAGGTCCCTGTTCTGGAACAGCTTGCTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPX

Protein Analysis

280

Amino Acids

31.95

Weight (kDa)

5.45

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPX PF03105 1 - 36 9.4e-09 SPX domain
SPX PF03105 104 - 160 7.1e-12 SPX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012998)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20150
fragaria_vesca FvH4_1g03200 FvH4_1g03200
malus_domestica MD02G1031100.v1.1 MD15G1172700.v1.1
prunus_persica Prupe.7G243500_v2.0.a1
pyrus_communis pycom02g02600 pycom15g15440
rosa_chinensis RchiOBHm_Chr2g0088351
rosa_laevigata RLG00000015944
rosa_multiflora Rmu_sc0004235.1_g000027
rosa_roxburghii Rroxscaffold_2G00152740
rosa_rugosa Rorug01G0483000
rosa_samantha Rh2AG038000 Rh2BG037300 Rh2CG038400 Rh2DG037900
rosa_wichuraiana Rw2G003010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 7 cut(s) 117, 120, 123, 139, 144, 572, 738
AcuI CTGAAG 2 cut(s) 104, 339
AfaI GTAC 2 cut(s) 431, 674
AfiI CCNNNNNNNGG 2 cut(s) 116, 823
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 232, 277, 582, 724
AhdI GACNNNNNGTC 2 cut(s) 175, 178
AjnI CCWGG 3 cut(s) 155, 207, 803
Alw21I GWGCWC 3 cut(s) 222, 451, 542
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 538
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 221
ApaLI GTGCAC 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AspLEI GCGC 5 cut(s) 57, 93, 153, 459, 758
AspS9I GGNCC 3 cut(s) 478, 611, 814
AsuHPI GGTGA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 3 cut(s) 478, 611, 814
BaeGI GKGCMC 1 cut(s) 542
BanII GRGCYC 2 cut(s) 111, 222
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 3 cut(s) 222, 451, 542
BccI CCATC 2 cut(s) 361, 602
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 3 cut(s) 157, 209, 805
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 2 cut(s) 94, 154
BglI GCCNNNNNGGC 1 cut(s) 52
BisI GCNGC 3 cut(s) 118, 121, 124
BlsI GCNGC 3 cut(s) 119, 122, 125
Bme1390I CCNGG 3 cut(s) 157, 209, 805
Bme18I GGWCC 3 cut(s) 478, 611, 814
BmeRI GACNNNNNGTC 2 cut(s) 175, 178
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 478, 611, 814
BmiI GGNNCC 2 cut(s) 613, 816
BmrFI CCNGG 3 cut(s) 157, 209, 805
BmsI GCATC 3 cut(s) 589, 599, 790
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 80, 407
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 155, 183
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 823
Bse1I ACTGG 2 cut(s) 414, 448
Bse3DI GCAATG 2 cut(s) 567, 710
BseBI CCWGG 3 cut(s) 157, 209, 805
BseDI CCNNGG 2 cut(s) 155, 183
BseLI CCNNNNNNNGG 2 cut(s) 116, 823
BseMI GCAATG 2 cut(s) 567, 710
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 414, 448
BseRI GAGGAG 2 cut(s) 121, 200
BseSI GKGCMC 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 57
BsiHKAI GWGCWC 3 cut(s) 222, 451, 542
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 597, 800
BslI CCNNNNNNNGG 2 cut(s) 116, 823
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 597, 800
BsmI GAATGC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 4 cut(s) 111, 222, 451, 542
Bsp143I GATC 2 cut(s) 30, 189
BspACI CCGC 7 cut(s) 117, 120, 123, 139, 144, 572, 738
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 613, 816
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 567, 710
BsrI ACTGG 2 cut(s) 414, 448
BssECI CCNNGG 2 cut(s) 155, 183
BssMI GATC 2 cut(s) 30, 189
Bst2UI CCWGG 3 cut(s) 157, 209, 805
Bst4CI ACNGT 2 cut(s) 389, 751
Bst6I CTCTTC 2 cut(s) 252, 315
BstC8I GCNNGC 4 cut(s) 461, 576, 717, 834
BstDEI CTNAG 3 cut(s) 20, 638, 837
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 2 cut(s) 94, 154
BstHHI GCGC 5 cut(s) 57, 93, 153, 459, 758
BstKTI GATC 2 cut(s) 33, 192
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 30, 189
BstNI CCWGG 3 cut(s) 157, 209, 805
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 155, 207, 803
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 219
BtsI GCAGTG 2 cut(s) 764, 773
BtsIMutI CAGTG 3 cut(s) 501, 764, 773
Cac8I GCNNGC 4 cut(s) 461, 576, 717, 834
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 5 cut(s) 57, 93, 153, 459, 758
Cfr13I GGNCC 3 cut(s) 478, 611, 814
Csp6I GTAC 2 cut(s) 430, 673
CviAII CATG 3 cut(s) 175, 359, 691
CviQI GTAC 2 cut(s) 430, 673
DdeI CTNAG 3 cut(s) 20, 638, 837
DpnI GATC 2 cut(s) 32, 191
DpnII GATC 2 cut(s) 30, 189
DriI GACNNNNNGTC 2 cut(s) 175, 178
Eam1104I CTCTTC 2 cut(s) 252, 315
Eam1105I GACNNNNNGTC 2 cut(s) 175, 178
EarI CTCTTC 2 cut(s) 252, 315
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 2 cut(s) 111, 222
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 478, 611, 814
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 104, 339
Eco88I CYCGRG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 2 cut(s) 478, 814
EcoRII CCWGG 3 cut(s) 155, 207, 803
EcoT38I GRGCYC 2 cut(s) 111, 222
FaeI CATG 3 cut(s) 178, 362, 694
FaiI YATR 9 cut(s) 176, 264, 329, 360, 402, 455, 688, 692, 704
FaqI GGGAC 2 cut(s) 597, 800
FatI CATG 3 cut(s) 174, 358, 690
FauI CCCGC 2 cut(s) 146, 151
Fnu4HI GCNGC 3 cut(s) 118, 121, 124
FriOI GRGCYC 2 cut(s) 111, 222
Fsp4HI GCNGC 3 cut(s) 118, 121, 124
GlaI GCGC 5 cut(s) 56, 92, 152, 458, 757
GluI GCNGC 3 cut(s) 118, 121, 124
HaeII RGCGCY 2 cut(s) 94, 154
HapII CCGG 1 cut(s) 47
HhaI GCGC 5 cut(s) 57, 93, 153, 459, 758
Hin1II CATG 3 cut(s) 178, 362, 694
Hin6I GCGC 5 cut(s) 55, 91, 151, 457, 756
HinP1I GCGC 5 cut(s) 55, 91, 151, 457, 756
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 3 cut(s) 540, 569, 649
Hpy188I TCNGA 3 cut(s) 184, 474, 595
Hpy188III TCNNGA 4 cut(s) 223, 424, 679, 824
Hpy8I GTNNAC 3 cut(s) 540, 569, 649
Hpy99I CGWCG 4 cut(s) 38, 167, 173, 248
HpyAV CCTTC 4 cut(s) 247, 271, 469, 520
HpyCH4III ACNGT 2 cut(s) 389, 751
HpyCH4V TGCA 5 cut(s) 540, 560, 602, 662, 778
HpyF3I CTNAG 3 cut(s) 20, 638, 837
Hsp92II CATG 3 cut(s) 178, 362, 694
HspAI GCGC 5 cut(s) 55, 91, 151, 457, 756
Kzo9I GATC 2 cut(s) 30, 189
LmnI GCTCC 2 cut(s) 79, 210
LweI GCATC 3 cut(s) 589, 599, 790
MalI GATC 2 cut(s) 32, 191
MboI GATC 2 cut(s) 30, 189
MhlI GDGCHC 4 cut(s) 111, 222, 451, 542
MluCI AATT 5 cut(s) 193, 232, 382, 729, 779
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 7 cut(s) 77, 104, 142, 178, 316, 404, 625
MseI TTAA 1 cut(s) 782
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 157, 209, 805
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 3 cut(s) 157, 209, 805
MvnI CGCG 1 cut(s) 57
NdeII GATC 2 cut(s) 30, 189
NlaIII CATG 3 cut(s) 178, 362, 694
NlaIV GGNNCC 2 cut(s) 613, 816
NspI RCATGY 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 221
PciI ACATGT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 310
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 3 cut(s) 119, 122, 125
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 2 cut(s) 478, 814
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 222
Psp5II RGGWCCY 2 cut(s) 478, 814
Psp6I CCWGG 3 cut(s) 155, 207, 803
PspGI CCWGG 3 cut(s) 155, 207, 803
PspN4I GGNNCC 2 cut(s) 613, 816
PspPI GGNCC 3 cut(s) 478, 611, 814
PspPPI RGGWCCY 2 cut(s) 478, 814
PstNI CAGNNNCTG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 553
RsaI GTAC 2 cut(s) 431, 674
RsaNI GTAC 2 cut(s) 430, 673
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 3 cut(s) 118, 121, 124
Sau3AI GATC 2 cut(s) 30, 189
Sau96I GGNCC 3 cut(s) 478, 611, 814
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 157, 209, 805
SduI GDGCHC 4 cut(s) 111, 222, 451, 542
SfaNI GCATC 3 cut(s) 589, 599, 790
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 3 cut(s) 478, 611, 814
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 3 cut(s) 95, 221, 422
SmoI CTYRAG 3 cut(s) 95, 221, 422
Sse9I AATT 5 cut(s) 193, 232, 382, 729, 779
SsiI CCGC 7 cut(s) 117, 120, 123, 139, 144, 572, 738
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 3 cut(s) 155, 207, 803
TaaI ACNGT 2 cut(s) 389, 751
TaqI TCGA 8 cut(s) 33, 105, 134, 162, 222, 246, 314, 678
TasI AATT 5 cut(s) 193, 232, 382, 729, 779
TatI WGTACW 1 cut(s) 672
TauI GCSGC 3 cut(s) 120, 123, 126
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 3 cut(s) 508, 771, 780
TspDTI ATGAA 6 cut(s) 17, 187, 344, 347, 600, 707
TspRI CASTG 3 cut(s) 508, 771, 780
VneI GTGCAC 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 478, 611, 814
XceI RCATGY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.